Petroleum is undoubtedly the most complex natural mixture known, and its myriad chemical components offer an extraordinary challenge for even the most advanced analytical platforms. Since the introduction of Petroleomic methodologies over a decade ago, a more complete, molecular-level understanding of petroleum has begun to emerge. The use of high resolving power mass spectrometers has led the charge, but new technologies are required for isomer elucidation. Thus, ion mobility with mass spectrometry provides a much-needed structural component to the already complex world of petroleum compositional analysis: the potential for isomer resolution. In this work, we introduce new software (PetroOrg-Software ©) and methodologies that reveal crude oil composition, at the isomeric level, in an automated and chemically intelligent way.