Local Alignment

1. Lab#6: Sequence Alignment (Local)
Asian University For Women
BINF 2000: Introduction to Bioinformatics
(Lab - Fall 2022)
Syed Mohammad Lokman
Instructor
Asian University for Women

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BINF 2000: Introduction to Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)

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BINF 2000: Introduction to Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)

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BINF 2000: Introduction to Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)

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BINF 2000: Introduction to Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)

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BINF 2000: Introduction to Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)

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BINF 2000: Introduction to Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)
Diagonal Horizontal Vertical
Match or
Mismatch
Gap

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BINF 2000: Introduction to Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)
Match or
Mismatch
Gap
Gap

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BINF 2000: Introduction to Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)
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BINF 2000: Introduction to Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)
Lab#5 mini-assessment:
Global Sequence Alignment
S1 = A T C A G A G T C
S2 = T T C A G T C
Match= 2; MisMatch= 0; Gap Penalty= - 2

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BINF 2000: Introduction to Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)
Lab#5 mini-assessment:
Global Sequence Alignment

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BINF 2000: Introduction to Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)
Lab#5 mini-assessment:
Global Sequence Alignment

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BINF 2000: Introduction to Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)
Lab#5 mini-assessment:
Global Sequence Alignment
ATCAGAGTC
| | | | | | : 8
TTCAG - - TC
ATCAGAGTC
| | | | | | : 8
TTC - - AGTC
ATCAGAGTC : 8
| | | | | |
TTCA - - GTC

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BINF 2000: Introduction to Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)

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BINF 2000: Introduction to Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)

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BINF 2000: Introduction to Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)

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BINF 2000: Introduction to Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)

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BINF 2000: Introduction to Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)

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BINF 2000: Introduction to Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)

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BINF 2000: Introduction to Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)

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BINF 2000: Introduction to Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)

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BINF 2000: Introduction to Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)

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BINF 2000: Introduction to Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)

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BINF 2000: Introduction to Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)

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BINF 2000: Introduction to Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)
Lab#6 Exercise:
Local Sequence Alignment

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BINF 2000: Introduction to Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)
Lab#6 Exercise:
Local Sequence Alignment

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BINF 2000: Introduction to Bioinformatics (Lab) Syed Mohammad Lokman (syed.lokman@auw.edu.bd)
Lab#6 Exercise:
Local Sequence Alignment