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DRONES IN HYDROLOGY:
International Winter School on Hydrology, Perugia, 28 Jan. - 1 Feb. 2019.
Prof. Salvatore Manfreda
Associate Professor of Water Management and Ecohydrology - http://www2.unibas.it/manfreda
Chair of the COST Action Harmonious - http://www.costharmonious.eu
2
A network of scientists is currently cooperating within the
framework of a COST (European Cooperation in Science and
Technology) Action named “Harmonious”.
The intention of “Harmonious” is to promote monitoring
strategies, establish harmonized monitoring practices, and
transfer most recent advances on UAS methodologies to others
within a global network.
COST Action HARMONIOUS
3
HARMONIOUS Partners
COST Countries
36 Partners
HARMONIOUS Network
4
Contrast
Enhancement
Geometric Correction
and image calibration
WG3
Soil Moisture Content
Leader Zhongbo Su
Vice leader David
Helman
Stream flow
River morphology
WG2
Vegetation Status
Leader Antonino Maltese
Vice leader Felix Frances
Harmonization
of different
procedures and
algorithms in
different
environments
WG1: UAS data
processing
Leader Pauline Miller
Vice leader Victor Pajuelo
Madrigal
WG5: Harmonization of
methods and results
Leader Eyal Ben Dor
Vice leader Flavia Tauro
WG4
Leader Matthew Perks
Vice leader Marko Kohv
Action Chair Salvatore Manfreda
Vice Chair Brigitta Toth
Science Communications Manager:
Guiomar Ruiz Perez
STSM coordinator: Isabel De Lima
Training School Coordinator:
Giuseppe Ciraolo
HARMONIOUS Action
5
WG5: Harmonization
of different
procedures and
algorithms in
different
environments
WG4: River and
Streamflow
monitoring
WG3: Soil Moisture
Monitoring
WG2: Vegetation
Monitoring
WG1: Data
Collection,
Processing and
Limitations
b) Identification of the
shared problems
a) Peculiarities and
specificity of each topic
c) Identification of
possible common
strategies for the four
WGs
d) Definition of the
correct protocol fro UAS
Environmental
Monitoring
6
The Home Page -
https://www.costharmonious.eu
7
Twitter
https://twitter.com/COST_HARMONIOUS
8
Facebook Harmonious-European-COST-
Action
352 followers on facebook
https://www.facebook.com/Harmonious-European-COST-
Action-485412205186817/
9
Examples of Common image artifacts
(Whitehead and Hugenholtz, 2014)
a) saturated image;
b) vignetting;
c) chromatic aberration;
d) mosaic blurring in overlap area;
e) incorrect colour balancing;
f) hotspots on mosaic due to
bidirectional reflectance effects;
g) relief displacement (tree lean)
effects in final image mosaic;
h) Image distortion due to DSM
errors;
i) mosaic gaps caused by
incorrect orthorectification or
missing images.
WG1:
UAS data processing
10
Comparison between a CubeSat and UAS NDVI map
Multi-spectral false colour (near infrared, red, green) imagery collected over the RoBo Alsahba date
palm farm near Al Kharj, Saudi Arabia. Imagery (from L-R) shows the resolution differences between: (A)
UAV mounted Parrot Sequoia sensor at 50 m height (0.05 m); (B) a WorldView-3 image (1.24 m); and
(C) Planet CubeSat data (approx. 3 m), collected on the 13th, 29° and 27th March 2018, respectively.
WG2
Vegetation Status
11
UAS thermal survey over an Aglianico vineyard in the
Basilicata region (southern Italy)
WG2
Vegetation Status
(Manfreda et al., R.S. 2018a)
12
How to detect water stress from an UAV?
From Xurxo Gago
13
Aerial thermography for water stress detection
(Berni et al., 2009)
14
Aerial thermography for water stress detection
(González-Dugoetal.,
2012)
15
How to detect the drought from an UAV?
Thermal indexes… an attempt to normalize the environment (Idso et al., 1980; Jones, 1999)
§ CWSI = T canopy – Twet / Tdry – Twet
§ IG = T dry – Tcanopy / Tcanopy – Twet
§ I3= T canopy – Twet / Tdry – Tcanopy
§ And the leaf energy balance:
!" =
−%&'!() * +, − +- + /
0 +, − +- %&' − !()123
− !-4
+, − +-=
567 589: 5; <)=>?'@A567B
'@A < 589: 5; :"567
16
Soil Moisture Monitoring
http://bestdroneforthejob.com/
WG3
17
Relationship existing between surface and
root-zone soil moisture
Manfreda et al. (AWR - 2007)
Developing a relationship between the
relative soil moisture at the surface to
that in deeper layers of soil would be very
useful for remote sensing applications.
This implies that prediction of soil
moisture in the deep layer given
the superficial soil moisture, has an
uncertainty that increases with a
reduced near surface estimate.
18
Soil Moisture Analytical Relationship (SMAR)
The schematization proposed assumes the soil composed of two layers, the first one at
the surface of a few centimeters and the second one below with a depth that may be
assumed coincident with the rooting depth of vegetation (of the order of 60–150 cm).
This may allow the derivation of a function of the soil moisture in one layer as a
function of the other one.
Manfreda et al. (HESS - 2014)
s1(t)
s2(t)
First layer
Second layer
Zr2
Zr1
!! !! = !! + (!! !!!! − !!)!!!! !!!!!!!
+ 1 − !! !!! !! !! − !!!!
19
Sensitivity of SMAR’s parameters
The derived root zone soil moisture (SRZ) is plotted changing the soil water loss coefficient (A),
the depth of the second soil layer (B), and the soil textures (C).
Manfreda et al. (HESS - 2014)
20
SMAR-EnKF
optimization
and prediction
Root mean square errors
ranging from 0.014 -
0.049 [cm3 cm-3].
Semi-arid Highlands
Temperate Forests
Temperate Forests
North American Deserts
Great PlainsTropical Wet Forests
Forested Mountains Northern Forests
(Baldwin et al., J. Hydr., 2017)
21
Field Site of Monteforte (SA)
22
Optic/thermal sensors Radar sensors ( ) Me
e
U
U
M M
M
1
1
)(
max
-
-
==F
)" = $ % − %' ((% − %'
di
Non contact equipments
Advantages
1) High spatial and temporal resolution
2) Relatively low costs
3) Applicable inaccessible sections
23
Stream flow monitoring with UAS Particle Tracking
Velocimetry (PTV)
Image processing
WG4:
Stream Monitoring
Lagrangian method
(Tauro et al., 2016)
24
Particle Tracking
Particle detection Velocity vectors
25
Monitoring River Systems
(Dal Sasso et al., E.M.A. 2018)
26
Optimal parameter settings for PTV techniques
Box plot of the relative
error for the different
densities investigated in
the configurations: a ideal
condition, b real condition
(Dal Sasso et al., E.M.A. 2018)
Particle displacement: Dx=1.5Dxp – Number of frames: 20
Ideal configuration
Real configuration
0 1 2 3 4 5 6
x 10
-4
0
200
400
600
800
1000
1200
1400
Seeding density (ppp)
N.frames
fitted curve (y= 0.0002635x-1.514
)
fitted curve (y= 0.0001318x-1.514
)
fitted curve (y= 0.0000659x-1.514
)
Numerical experiments (Dx=1.5Dxp)
Numerical experiments (Dx=3Dxp)
Numerical experiments (Dx=6Dxp)
27
Image Velocimetry Techniques: Intro
28
2-D flow velocity field derived
using an optical camera
mounted on a quadcopter
hovering over a portion of the
Bradano river system in
southern Italy. One of the
images used for the analysis is
shown as a background, where
surface features used by flow
tracking algorithms are
highlighted in the insets (a, b).
Image Velocimetry
29
Surface Flow Velocity
Pixels
500 600 700 800 900 1000 1100
Pixels
400
500
600
700
800
900
[m/s]
0
0.5
1
1.5
2
2.5
3
Charcoal
y = 1.0849x + 0.0869
R² = 0.9
0
0.5
1
1.5
2
2.5
0 1 2 3
UAVderivedsurface
velocity(m/s)
Surface Velocity measure with
traditional techniques (m/s)
30
Field Experience
with UAS
Validation with
current meters
31
Stream Flow Monitoring – Data Collection for
Benchmarking Optical Techniques
CASE STUDIES
32
Original Video File Name: [River]_[Country][ddmmyearhhmmUTC].mov
Camera Model:
Platform used (gaugecam, drone, mobile, etc.):
Camera setting (autofocus, field of view, ISO, stabilization, …):
Video resolution (4000x2000, …)
Video frequency (Hz):
Presence of tracers and type:
Optional Info
Lumen:
Wind speed and orientation:
Case Study
River Name:
River Basin Drainage Area (km2
):
Cross-Section Coordinates (Lat, Long WGS84):
Flow regime (low, medium, high):
Ground-true availability (yes or not):
File Format (mov, avi, mp4, etc.):
Reference paper:
Processed Data
File Name of Processed Frames: [River]_[Country][ddmmyearhhmmUTC].zip
Number of frames:
Frame rate (Hz):
Pixel dimension:
Pre-processing actions (contrast correction, channel used, orthorectification,
stabilization, etc.):
Stream Flow Monitoring – Data Collection
33
FRCs are generally obtained using
curve fitting methods with river stage
(H) and discharge (Q) observations.
The most common equation is:
The Use of Discharge DATA: FRCs
topographic surveys
Velocity Measurements
34
The Key Idea
Local minima
Parameter space
Scheme 1
Scheme 3
Scheme 2
Scheme 4
Fitness Function
Impact of physical information
on the parameter space
domain
Manfreda et al. (HP - 2018)
Time
Q (m3/s)
SURFACE RUNOFF
SNOW MELT
BASE FLOW
Decomposing the parameter
calibration according to the
existing processes leads to
more reliable model
calibrations.
Physical
constrains
Model Performances
Including physical
info
Stream Flow Components
35
The V W MethodQ(m3/s)
H (m)
Decoupling
Streamflow
measurements
Classic Method V W Method
H (m)
topographic
surveys
V(m/s)
Manfreda (JH - 2018)
36
§ FRCs derived with different permutation of the same
dataset;
§ Comparison is made on the calibration dataset and on
the data excluded from the calibration.
Comparison of the two methodologies
Manfreda (JH - 2018)
37
§ UAS-based remote sensing provides new advanced procedures to
monitor key variables, including vegetation status, soil moisture
content, and stream flow.
§ The detailed description of such variables will increase our
capacity to describe water resource availability and assist
agricultural and ecosystem management.
§ The wide range of applications testifies to the great potential of
these techniques, but, at the same time, the variety of
methodologies adopted is evidence that there is still need for
harmonization efforts.
Conclusion
38
39
40
§ Manfreda and McCabe (2019). Emerging earth observing platforms offer new insights into hydrological processes, Hydrolink.
§ Perks, Hortobágyi, Le Coz, Maddock, Pearce, Tauro, Dal Sasso, Grimaldi, Manfreda (2019) Towards harmonization of image
velocimetry techniques for determining open-channel flow, Earth system science data (in preparation).
§ Manfreda, Dvorak, Mullerova, Herban, Vuono, Arranz Justel, Perks (2019) Assessing the Accuracy of Digital Surface Models Derived
from Optical Imagery Acquired with Unmanned Aerial Systems, Drones.
§ Manfreda, On the derivation of flow rating-curves in data-scarce environments, Journal of Hydrology, 2018.
§ Dal Sasso, Pizarro, Samela, Mita, and Manfreda (2018) Exploring the optimal experimental setup for surface flow velocity
measurements using PTV, Environmental Monitoring and Assessment.
§ Manfreda, McCabe, Miller, Lucas, Pajuelo Madrigal, Mallinis, Ben-Dor, Helman, Estes, Ciraolo, Müllerová, Tauro, De Lima, De Lima,
Frances, Caylor, Kohv, Maltese (2018), On the Use of Unmanned Aerial Systems for Environmental Monitoring, Remote Sensing.
§ Baldwin, Manfreda, Keller, and Smithwick, Predicting root zone soil moisture with soil properties and satellite near-surface moisture data at
locations across the United States, Journal of Hydrology, 2017.
§ Manfreda, Brocca, T. Moramarco, F. Melone, and J. Sheffield, A physically based approach for the estimation of root-zone soil
moisture from surface measurements, Hydrology and Earth System Sciences, 18, 1199-1212, 2014.
§ Manfreda, Lacava, Onorati, Pergola, Di Leo, Margiotta, and Tramutoli, On the use of AMSU-based products for the description of soil
water content at basin scale, Hydrology and Earth System Sciences, 15, 2839-2852, 2011.
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DRONES IN HYDROLOGY

  • 1. DRONES IN HYDROLOGY: International Winter School on Hydrology, Perugia, 28 Jan. - 1 Feb. 2019. Prof. Salvatore Manfreda Associate Professor of Water Management and Ecohydrology - http://www2.unibas.it/manfreda Chair of the COST Action Harmonious - http://www.costharmonious.eu
  • 2. 2 A network of scientists is currently cooperating within the framework of a COST (European Cooperation in Science and Technology) Action named “Harmonious”. The intention of “Harmonious” is to promote monitoring strategies, establish harmonized monitoring practices, and transfer most recent advances on UAS methodologies to others within a global network. COST Action HARMONIOUS
  • 3. 3 HARMONIOUS Partners COST Countries 36 Partners HARMONIOUS Network
  • 4. 4 Contrast Enhancement Geometric Correction and image calibration WG3 Soil Moisture Content Leader Zhongbo Su Vice leader David Helman Stream flow River morphology WG2 Vegetation Status Leader Antonino Maltese Vice leader Felix Frances Harmonization of different procedures and algorithms in different environments WG1: UAS data processing Leader Pauline Miller Vice leader Victor Pajuelo Madrigal WG5: Harmonization of methods and results Leader Eyal Ben Dor Vice leader Flavia Tauro WG4 Leader Matthew Perks Vice leader Marko Kohv Action Chair Salvatore Manfreda Vice Chair Brigitta Toth Science Communications Manager: Guiomar Ruiz Perez STSM coordinator: Isabel De Lima Training School Coordinator: Giuseppe Ciraolo HARMONIOUS Action
  • 5. 5 WG5: Harmonization of different procedures and algorithms in different environments WG4: River and Streamflow monitoring WG3: Soil Moisture Monitoring WG2: Vegetation Monitoring WG1: Data Collection, Processing and Limitations b) Identification of the shared problems a) Peculiarities and specificity of each topic c) Identification of possible common strategies for the four WGs d) Definition of the correct protocol fro UAS Environmental Monitoring
  • 6. 6 The Home Page - https://www.costharmonious.eu
  • 8. 8 Facebook Harmonious-European-COST- Action 352 followers on facebook https://www.facebook.com/Harmonious-European-COST- Action-485412205186817/
  • 9. 9 Examples of Common image artifacts (Whitehead and Hugenholtz, 2014) a) saturated image; b) vignetting; c) chromatic aberration; d) mosaic blurring in overlap area; e) incorrect colour balancing; f) hotspots on mosaic due to bidirectional reflectance effects; g) relief displacement (tree lean) effects in final image mosaic; h) Image distortion due to DSM errors; i) mosaic gaps caused by incorrect orthorectification or missing images. WG1: UAS data processing
  • 10. 10 Comparison between a CubeSat and UAS NDVI map Multi-spectral false colour (near infrared, red, green) imagery collected over the RoBo Alsahba date palm farm near Al Kharj, Saudi Arabia. Imagery (from L-R) shows the resolution differences between: (A) UAV mounted Parrot Sequoia sensor at 50 m height (0.05 m); (B) a WorldView-3 image (1.24 m); and (C) Planet CubeSat data (approx. 3 m), collected on the 13th, 29° and 27th March 2018, respectively. WG2 Vegetation Status
  • 11. 11 UAS thermal survey over an Aglianico vineyard in the Basilicata region (southern Italy) WG2 Vegetation Status (Manfreda et al., R.S. 2018a)
  • 12. 12 How to detect water stress from an UAV? From Xurxo Gago
  • 13. 13 Aerial thermography for water stress detection (Berni et al., 2009)
  • 14. 14 Aerial thermography for water stress detection (González-Dugoetal., 2012)
  • 15. 15 How to detect the drought from an UAV? Thermal indexes… an attempt to normalize the environment (Idso et al., 1980; Jones, 1999) § CWSI = T canopy – Twet / Tdry – Twet § IG = T dry – Tcanopy / Tcanopy – Twet § I3= T canopy – Twet / Tdry – Tcanopy § And the leaf energy balance: !" = −%&'!() * +, − +- + / 0 +, − +- %&' − !()123 − !-4 +, − +-= 567 589: 5; <)=>?'@A567B '@A < 589: 5; :"567
  • 17. 17 Relationship existing between surface and root-zone soil moisture Manfreda et al. (AWR - 2007) Developing a relationship between the relative soil moisture at the surface to that in deeper layers of soil would be very useful for remote sensing applications. This implies that prediction of soil moisture in the deep layer given the superficial soil moisture, has an uncertainty that increases with a reduced near surface estimate.
  • 18. 18 Soil Moisture Analytical Relationship (SMAR) The schematization proposed assumes the soil composed of two layers, the first one at the surface of a few centimeters and the second one below with a depth that may be assumed coincident with the rooting depth of vegetation (of the order of 60–150 cm). This may allow the derivation of a function of the soil moisture in one layer as a function of the other one. Manfreda et al. (HESS - 2014) s1(t) s2(t) First layer Second layer Zr2 Zr1 !! !! = !! + (!! !!!! − !!)!!!! !!!!!!! + 1 − !! !!! !! !! − !!!!
  • 19. 19 Sensitivity of SMAR’s parameters The derived root zone soil moisture (SRZ) is plotted changing the soil water loss coefficient (A), the depth of the second soil layer (B), and the soil textures (C). Manfreda et al. (HESS - 2014)
  • 20. 20 SMAR-EnKF optimization and prediction Root mean square errors ranging from 0.014 - 0.049 [cm3 cm-3]. Semi-arid Highlands Temperate Forests Temperate Forests North American Deserts Great PlainsTropical Wet Forests Forested Mountains Northern Forests (Baldwin et al., J. Hydr., 2017)
  • 21. 21 Field Site of Monteforte (SA)
  • 22. 22 Optic/thermal sensors Radar sensors ( ) Me e U U M M M 1 1 )( max - - ==F )" = $ % − %' ((% − %' di Non contact equipments Advantages 1) High spatial and temporal resolution 2) Relatively low costs 3) Applicable inaccessible sections
  • 23. 23 Stream flow monitoring with UAS Particle Tracking Velocimetry (PTV) Image processing WG4: Stream Monitoring Lagrangian method (Tauro et al., 2016)
  • 25. 25 Monitoring River Systems (Dal Sasso et al., E.M.A. 2018)
  • 26. 26 Optimal parameter settings for PTV techniques Box plot of the relative error for the different densities investigated in the configurations: a ideal condition, b real condition (Dal Sasso et al., E.M.A. 2018) Particle displacement: Dx=1.5Dxp – Number of frames: 20 Ideal configuration Real configuration 0 1 2 3 4 5 6 x 10 -4 0 200 400 600 800 1000 1200 1400 Seeding density (ppp) N.frames fitted curve (y= 0.0002635x-1.514 ) fitted curve (y= 0.0001318x-1.514 ) fitted curve (y= 0.0000659x-1.514 ) Numerical experiments (Dx=1.5Dxp) Numerical experiments (Dx=3Dxp) Numerical experiments (Dx=6Dxp)
  • 28. 28 2-D flow velocity field derived using an optical camera mounted on a quadcopter hovering over a portion of the Bradano river system in southern Italy. One of the images used for the analysis is shown as a background, where surface features used by flow tracking algorithms are highlighted in the insets (a, b). Image Velocimetry
  • 29. 29 Surface Flow Velocity Pixels 500 600 700 800 900 1000 1100 Pixels 400 500 600 700 800 900 [m/s] 0 0.5 1 1.5 2 2.5 3 Charcoal y = 1.0849x + 0.0869 R² = 0.9 0 0.5 1 1.5 2 2.5 0 1 2 3 UAVderivedsurface velocity(m/s) Surface Velocity measure with traditional techniques (m/s)
  • 31. 31 Stream Flow Monitoring – Data Collection for Benchmarking Optical Techniques CASE STUDIES
  • 32. 32 Original Video File Name: [River]_[Country][ddmmyearhhmmUTC].mov Camera Model: Platform used (gaugecam, drone, mobile, etc.): Camera setting (autofocus, field of view, ISO, stabilization, …): Video resolution (4000x2000, …) Video frequency (Hz): Presence of tracers and type: Optional Info Lumen: Wind speed and orientation: Case Study River Name: River Basin Drainage Area (km2 ): Cross-Section Coordinates (Lat, Long WGS84): Flow regime (low, medium, high): Ground-true availability (yes or not): File Format (mov, avi, mp4, etc.): Reference paper: Processed Data File Name of Processed Frames: [River]_[Country][ddmmyearhhmmUTC].zip Number of frames: Frame rate (Hz): Pixel dimension: Pre-processing actions (contrast correction, channel used, orthorectification, stabilization, etc.): Stream Flow Monitoring – Data Collection
  • 33. 33 FRCs are generally obtained using curve fitting methods with river stage (H) and discharge (Q) observations. The most common equation is: The Use of Discharge DATA: FRCs topographic surveys Velocity Measurements
  • 34. 34 The Key Idea Local minima Parameter space Scheme 1 Scheme 3 Scheme 2 Scheme 4 Fitness Function Impact of physical information on the parameter space domain Manfreda et al. (HP - 2018) Time Q (m3/s) SURFACE RUNOFF SNOW MELT BASE FLOW Decomposing the parameter calibration according to the existing processes leads to more reliable model calibrations. Physical constrains Model Performances Including physical info Stream Flow Components
  • 35. 35 The V W MethodQ(m3/s) H (m) Decoupling Streamflow measurements Classic Method V W Method H (m) topographic surveys V(m/s) Manfreda (JH - 2018)
  • 36. 36 § FRCs derived with different permutation of the same dataset; § Comparison is made on the calibration dataset and on the data excluded from the calibration. Comparison of the two methodologies Manfreda (JH - 2018)
  • 37. 37 § UAS-based remote sensing provides new advanced procedures to monitor key variables, including vegetation status, soil moisture content, and stream flow. § The detailed description of such variables will increase our capacity to describe water resource availability and assist agricultural and ecosystem management. § The wide range of applications testifies to the great potential of these techniques, but, at the same time, the variety of methodologies adopted is evidence that there is still need for harmonization efforts. Conclusion
  • 38. 38
  • 39. 39
  • 40. 40 § Manfreda and McCabe (2019). Emerging earth observing platforms offer new insights into hydrological processes, Hydrolink. § Perks, Hortobágyi, Le Coz, Maddock, Pearce, Tauro, Dal Sasso, Grimaldi, Manfreda (2019) Towards harmonization of image velocimetry techniques for determining open-channel flow, Earth system science data (in preparation). § Manfreda, Dvorak, Mullerova, Herban, Vuono, Arranz Justel, Perks (2019) Assessing the Accuracy of Digital Surface Models Derived from Optical Imagery Acquired with Unmanned Aerial Systems, Drones. § Manfreda, On the derivation of flow rating-curves in data-scarce environments, Journal of Hydrology, 2018. § Dal Sasso, Pizarro, Samela, Mita, and Manfreda (2018) Exploring the optimal experimental setup for surface flow velocity measurements using PTV, Environmental Monitoring and Assessment. § Manfreda, McCabe, Miller, Lucas, Pajuelo Madrigal, Mallinis, Ben-Dor, Helman, Estes, Ciraolo, Müllerová, Tauro, De Lima, De Lima, Frances, Caylor, Kohv, Maltese (2018), On the Use of Unmanned Aerial Systems for Environmental Monitoring, Remote Sensing. § Baldwin, Manfreda, Keller, and Smithwick, Predicting root zone soil moisture with soil properties and satellite near-surface moisture data at locations across the United States, Journal of Hydrology, 2017. § Manfreda, Brocca, T. Moramarco, F. Melone, and J. Sheffield, A physically based approach for the estimation of root-zone soil moisture from surface measurements, Hydrology and Earth System Sciences, 18, 1199-1212, 2014. § Manfreda, Lacava, Onorati, Pergola, Di Leo, Margiotta, and Tramutoli, On the use of AMSU-based products for the description of soil water content at basin scale, Hydrology and Earth System Sciences, 15, 2839-2852, 2011. Related Publications