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CASSAVA YIELD PREDICTION
USING VEGETATION INDICES
FROM SENTINEL DATA
SATELLITE
Riska Ayu Purnamasari(1), Tofael Ahamed(2) and Ryozo Noguchi(2)
(1)Graduate School of Life and Environmental Science, University of
Tsukuba
(2)Faculty of Life and Environmental Science, University of Tsukuba
Cassava Yield Prediction
■ Early crop yield forecasting is of vital importance
and may help policy makers and farmer in planning
and management.
■ Analysis of vegetation and detection of changes in
vegetation patterns are important monitoring
method to observe health and productivity can be
reflect from condition of crop canopy, soil, and yield.
■ Data on cultivated surfaces and yields are an
essential prerequisite for a good agricultural
production forecast
■ Predicting crop yield using remote sensing data
products often depends on an empirical approach
that relates VIs alone or in combination with remote-
sensing–derived meteorological variables to the
reported crop yields.
Yield Prediction Parameter
Biophysical
Parameter
■ Chlorophyll Content: Leaf
chlorophyll content is an
important variable for agricultural
remote sensing because of its
close relationship to leaf nitrogen
content
■ Leaf Area Index (LAI): Leaf Area
Index (LAI) is the total one-sided
(or one half of the total all-sided)
green leaf area per unit ground-
surface area.
■ Normalized Difference
Vegetation Index : Combination
of red and NIR
Vegetation Index
■ Soil-Adjusted Vegetation Index:
The SAVI is structured similar to
the NDVI but with the addition of a
“soil brightness correction factor
Methodology
Field
Experiment
Satellite
Database
(Sentinel-2)
Atmospheric
Correction
Calculate VIs
NDVI
SAVI
Ground Truth
Crop Yield
Phonological
monitoring
Correlation
Analysis
Relationship
between Vis
and Crop
growth
Chl
LAI
Indonesia
Banten
Province
Figure 2. Banten Province as Study Site Selection
Study Area
LOCAL FOOD GROWING SEASONS IN BANTEN
PROVINCE, INDONESIA
(Farmer Survey, 2016)
Sentinel-2
■ Carries a Multi-Spectral Imager (MSI) with a swath of 290 km
■ Provides a set of 13 spectral bands spanning from the visible and near
infrared to the shortwave infrared
■ Featuring four bands at 10 m, six bands at 20 m and three bands at 60 m
spatial resolution
■ S2 satellites will deliver data taken over all land surfaces and coastal zones
every five days under cloud-free conditions, and typically every 15–30 days
considering the presence of clouds
SURVEY REPORT
Riska Ayu Purnamasari
22 July- 6 August 2017
Survey for Cassava Field Availability
(22-23 July 2017)
Lebak,
Banten
Serang,
Banten
Sampling Strategy for In-situ Cassava
Yield
• One fields considered as sample fields for this study that harvest around August
2017
• In each of the four study fields, stratified random sampling-based 18 points (10 for
model generation and 8 for validation) determined for in-situ cassava yield data
collection
• Intensive fieldwork from July 4th until 8th , 2017 carried out 2 to 3 days prior to the
harvest time of each field to assure the steadiness of crop status.
• In-situ collection of cassava yield (actual yield) achieved by harvesting cassava over
a 10 m2 area at each sampling point (considered with Sentinel-2 datasets pixel)
Field Survey and Data Collection
With surveyors and farmer
Measuring for 10 m area
Field Survey and Data Collection
Measuring Actual Yield Cassava Harvesting
Satellite Image Processing
SNAP Software (The Sentinel Application
Resample All Bands in Image to 10 m2
pixel
Open in RGB Image
Window
Open in RGB Image
Window
Open the GPS point in Pin
Manager
Zoom to the field survey
location
Subset Image to Crop Field
Location
Calculate the
NDVI
Calculate the
NDVI
NDVI Map and Pixel
Value
Calculate the
LAI
LAI Map and Pixel
Value
Pin No Tree Lat Long
Yield/
Tree
16-Dec 17-Mar Mei-17 17-Jun Juli-17
Yield
(kg/m2)
NDVI LAI NDVI LAI NDVI LAI NDVI LAI NDVI LAI
2 5.15 -6.5898 106.0913 13.5 0.2587 0.9435 0.3558 1.069 0.3223 1.7343 0.7031 2.4818 0.6343 2.1953 54
4 5.2 -6.5897 106.0914 8.6 0.2267 0.9418 0.3617 1.0732 0.3412 1.7334 0.7025 2.4854 0.6287 2.1884 34.4
5 7.2 -6.5903 106.0917 12.5 0.2411 1.0191 0.394 1.4577 0.2993 1.4575 0.6428 2.4159 0.6033 2.3392 50
7 4.7 -6.5897 106.0916 21.2 0.2146 0.9499 0.3969 1.1904 0.3536 1.7201 0.705 2.5663 0.6522 2.3808 84.8
8 10.4 -6.59 106.0915 14 0.2494 0.941 0.3667 1.1594 0.3338 1.6123 0.6678 2.4455 0.6248 2.3069 56
9 7.12 -6.5896 106.0917 12.5 0.1992 1.0102 0.3913 1.2047 0.3354 1.4971 0.628 2.129 0.6474 2.0789 50
10 3.19 -6.5897 106.0913 11.3 0.2467 0.9432 0.3489 1.0667 0.3303 1.7329 0.692 2.4755 0.6343 2.19142 45.2
13 10.11 -6.5901 106.0914 12 0.2594 1.0335 0.3566 1.2106 0.3078 1.6519 0.6729 2.3788 0.6256 2.3433 48
14 6.2 -6.5896 106.0914 13 0.2238 0.9884 0.3629 1.0456 0.3477 1.6934 0.7045 2.4809 0.6384 2.1828 52
15 10.17 -6.59 106.0914 11.5 0.2601 0.9455 0.3615 1.0447 0.3262 1.7607 0.6713 2.5059 0.6356 2.3296 46
Data Collection
Time series of sentinel-2 datasets reflectance use NDVI (a) and LAI (b) during the growing
season of Cassava
0
0.1
0.2
0.3
0.4
0.5
0.6
0.7
0.8
26 96 176 191 248
NDVI
Day After Planting (DAP)
0
0.5
1
1.5
2
2.5
3
26 96 176 191 248
LAI
Days After Planting (DAP)
Cassava Growing Season
Index
Days After Planting (DAP)
26 96 176 191 248
NDVI -0.35 0.57 0.47 0.28 0.47
LAI -0.18 0.15 0.09 0.33 0.44
Correlation coefficients calculated between hyperspectral indices and within-field yield data for all
images acquired during the growing season.
Correlation between actual and predicted
yield
y = 0.3268x + 35.64
R² = 0.57
0
10
20
30
40
50
60
70
0 20 40 60 80 100
PREDICTED
YIELD
ACTUAL YIELD
NDVI Based Equation
y = 0.1927x + 42.73
R² = 0.43
0
10
20
30
40
50
60
70
0 20 40 60 80 100
PREDICTED
YIELD
ACTUAL YIELD
LAI Based Equation
y = 0.441x + 29.599
R² = 0.67
0
10
20
30
40
50
60
70
80
0 20 40 60 80 100
PREDICTED
YIELD
ACTUAL YIELD
NDVI&LAI Based Equation
The best fit equations used for the prediction of cassava yield
Single Regression R2 Multiple Regression R2
NDVI y = 385.88NDVI - 89.694 0.57
y = 342.41NDVI +41.47LAI - 167.08 0.65
LAI y = 52.914LAI - 66.31 0.44
Validation Prediction Model
Next Plan
■ Calculate SAVI
■ Calculate Chlorophyll content
■ Build Growth Model with DSSAT
Thank You

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1 Survey Report_Riska_230717.pptx

  • 1. CASSAVA YIELD PREDICTION USING VEGETATION INDICES FROM SENTINEL DATA SATELLITE Riska Ayu Purnamasari(1), Tofael Ahamed(2) and Ryozo Noguchi(2) (1)Graduate School of Life and Environmental Science, University of Tsukuba (2)Faculty of Life and Environmental Science, University of Tsukuba
  • 2.
  • 3. Cassava Yield Prediction ■ Early crop yield forecasting is of vital importance and may help policy makers and farmer in planning and management. ■ Analysis of vegetation and detection of changes in vegetation patterns are important monitoring method to observe health and productivity can be reflect from condition of crop canopy, soil, and yield. ■ Data on cultivated surfaces and yields are an essential prerequisite for a good agricultural production forecast ■ Predicting crop yield using remote sensing data products often depends on an empirical approach that relates VIs alone or in combination with remote- sensing–derived meteorological variables to the reported crop yields.
  • 4. Yield Prediction Parameter Biophysical Parameter ■ Chlorophyll Content: Leaf chlorophyll content is an important variable for agricultural remote sensing because of its close relationship to leaf nitrogen content ■ Leaf Area Index (LAI): Leaf Area Index (LAI) is the total one-sided (or one half of the total all-sided) green leaf area per unit ground- surface area. ■ Normalized Difference Vegetation Index : Combination of red and NIR Vegetation Index ■ Soil-Adjusted Vegetation Index: The SAVI is structured similar to the NDVI but with the addition of a “soil brightness correction factor
  • 5. Methodology Field Experiment Satellite Database (Sentinel-2) Atmospheric Correction Calculate VIs NDVI SAVI Ground Truth Crop Yield Phonological monitoring Correlation Analysis Relationship between Vis and Crop growth Chl LAI
  • 6. Indonesia Banten Province Figure 2. Banten Province as Study Site Selection Study Area
  • 7. LOCAL FOOD GROWING SEASONS IN BANTEN PROVINCE, INDONESIA (Farmer Survey, 2016)
  • 8. Sentinel-2 ■ Carries a Multi-Spectral Imager (MSI) with a swath of 290 km ■ Provides a set of 13 spectral bands spanning from the visible and near infrared to the shortwave infrared ■ Featuring four bands at 10 m, six bands at 20 m and three bands at 60 m spatial resolution ■ S2 satellites will deliver data taken over all land surfaces and coastal zones every five days under cloud-free conditions, and typically every 15–30 days considering the presence of clouds
  • 9. SURVEY REPORT Riska Ayu Purnamasari 22 July- 6 August 2017
  • 10. Survey for Cassava Field Availability (22-23 July 2017) Lebak, Banten Serang, Banten
  • 11. Sampling Strategy for In-situ Cassava Yield • One fields considered as sample fields for this study that harvest around August 2017 • In each of the four study fields, stratified random sampling-based 18 points (10 for model generation and 8 for validation) determined for in-situ cassava yield data collection • Intensive fieldwork from July 4th until 8th , 2017 carried out 2 to 3 days prior to the harvest time of each field to assure the steadiness of crop status. • In-situ collection of cassava yield (actual yield) achieved by harvesting cassava over a 10 m2 area at each sampling point (considered with Sentinel-2 datasets pixel)
  • 12. Field Survey and Data Collection With surveyors and farmer Measuring for 10 m area
  • 13. Field Survey and Data Collection Measuring Actual Yield Cassava Harvesting
  • 14. Satellite Image Processing SNAP Software (The Sentinel Application
  • 15. Resample All Bands in Image to 10 m2 pixel
  • 16. Open in RGB Image Window
  • 17. Open in RGB Image Window
  • 18. Open the GPS point in Pin Manager
  • 19. Zoom to the field survey location
  • 20. Subset Image to Crop Field Location
  • 23. NDVI Map and Pixel Value
  • 25. LAI Map and Pixel Value
  • 26. Pin No Tree Lat Long Yield/ Tree 16-Dec 17-Mar Mei-17 17-Jun Juli-17 Yield (kg/m2) NDVI LAI NDVI LAI NDVI LAI NDVI LAI NDVI LAI 2 5.15 -6.5898 106.0913 13.5 0.2587 0.9435 0.3558 1.069 0.3223 1.7343 0.7031 2.4818 0.6343 2.1953 54 4 5.2 -6.5897 106.0914 8.6 0.2267 0.9418 0.3617 1.0732 0.3412 1.7334 0.7025 2.4854 0.6287 2.1884 34.4 5 7.2 -6.5903 106.0917 12.5 0.2411 1.0191 0.394 1.4577 0.2993 1.4575 0.6428 2.4159 0.6033 2.3392 50 7 4.7 -6.5897 106.0916 21.2 0.2146 0.9499 0.3969 1.1904 0.3536 1.7201 0.705 2.5663 0.6522 2.3808 84.8 8 10.4 -6.59 106.0915 14 0.2494 0.941 0.3667 1.1594 0.3338 1.6123 0.6678 2.4455 0.6248 2.3069 56 9 7.12 -6.5896 106.0917 12.5 0.1992 1.0102 0.3913 1.2047 0.3354 1.4971 0.628 2.129 0.6474 2.0789 50 10 3.19 -6.5897 106.0913 11.3 0.2467 0.9432 0.3489 1.0667 0.3303 1.7329 0.692 2.4755 0.6343 2.19142 45.2 13 10.11 -6.5901 106.0914 12 0.2594 1.0335 0.3566 1.2106 0.3078 1.6519 0.6729 2.3788 0.6256 2.3433 48 14 6.2 -6.5896 106.0914 13 0.2238 0.9884 0.3629 1.0456 0.3477 1.6934 0.7045 2.4809 0.6384 2.1828 52 15 10.17 -6.59 106.0914 11.5 0.2601 0.9455 0.3615 1.0447 0.3262 1.7607 0.6713 2.5059 0.6356 2.3296 46 Data Collection
  • 27. Time series of sentinel-2 datasets reflectance use NDVI (a) and LAI (b) during the growing season of Cassava 0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 26 96 176 191 248 NDVI Day After Planting (DAP) 0 0.5 1 1.5 2 2.5 3 26 96 176 191 248 LAI Days After Planting (DAP) Cassava Growing Season
  • 28. Index Days After Planting (DAP) 26 96 176 191 248 NDVI -0.35 0.57 0.47 0.28 0.47 LAI -0.18 0.15 0.09 0.33 0.44 Correlation coefficients calculated between hyperspectral indices and within-field yield data for all images acquired during the growing season.
  • 29. Correlation between actual and predicted yield y = 0.3268x + 35.64 R² = 0.57 0 10 20 30 40 50 60 70 0 20 40 60 80 100 PREDICTED YIELD ACTUAL YIELD NDVI Based Equation y = 0.1927x + 42.73 R² = 0.43 0 10 20 30 40 50 60 70 0 20 40 60 80 100 PREDICTED YIELD ACTUAL YIELD LAI Based Equation y = 0.441x + 29.599 R² = 0.67 0 10 20 30 40 50 60 70 80 0 20 40 60 80 100 PREDICTED YIELD ACTUAL YIELD NDVI&LAI Based Equation The best fit equations used for the prediction of cassava yield Single Regression R2 Multiple Regression R2 NDVI y = 385.88NDVI - 89.694 0.57 y = 342.41NDVI +41.47LAI - 167.08 0.65 LAI y = 52.914LAI - 66.31 0.44 Validation Prediction Model
  • 30. Next Plan ■ Calculate SAVI ■ Calculate Chlorophyll content ■ Build Growth Model with DSSAT