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Microbiology 
An 
introduction 
Presented by 
D. Mona 
Othman 
Albureikan 
Lecture (5,6)
Prokaryotic and Eukaryotic Cells 
• Prokaryotes and eukaryotes are chemically similar. 
• They both contain nucleic acids, proteins, lipids, and 
carbohydrates. 
• They use the same kinds of chemical reactions to metabolize 
food, build proteins, and store energy.
Prokaryotic and Eukaryotic Cells 
• Prokaryote comes from the Greek words for 
prenucleus. 
• Eukaryote comes from the Greek words for 
true nucleus.
Comparing Prokaryotic and Eukaryotic Cells: An Overview 
Prokaryote 
• One circular chromosome, not in 
a membrane 
• No histones 
• No organelles 
• Bacteria: peptidoglycan cell 
walls 
• Archaea: pseudomurein cell 
walls 
• Binary fission 
Eukaryote 
• Paired chromosomes, 
in nuclear membrane 
• Histones 
• Organelles 
• Polysaccharide cell walls 
• Mitotic spindle
Comparing Prokaryotic and Eukaryotic Cells: An Overview 
Prokaryote Eukaryote 
1. Their DNA is found in the cell 's 
nucleus, which is separated from the 
cytoplasm by a nuclear membrane, 
and the DNA is found in multiple 
chromosomes. 
1. Their DNA is not enclosed within a 
membrane and is usually a singular 
circularly arranged chromosome. 
(Some bacteria, such as Vibrio ch., 
have two chromosomes, and some 
bacteria have a linearly arranged 
chromosome.)
Comparing Prokaryotic and Eukaryotic Cells: An Overview 
Prokaryote Eukaryote 
2. Their DNA is not associated with 
histones (special chromosomal 
proteins found in eukaryotes); other 
proteins are associated with the DNA. 
2. Their DNA is consistently associated 
with chromosomal proteins called 
histones and with nonhistones.
Comparing Prokaryotic and Eukaryotic Cells: An Overview 
Prokaryote Eukaryote 
3. They lack membrane 
enclosed organelles. 
3. They have a number of 
membrane-enclosed organelles, 
including mitochondria, 
endoplasmic retic ulum, Golgi 
complex, lysosomes, and sometimes 
chloroplasts.
Comparing Prokaryotic and Eukaryotic Cells: An Overview 
Prokaryote Eukaryote 
4. Their cell walls almost 
always contain the complex 
polysaccharide peptidoglycan. 
4. Their cell walls, when present, 
are chemically simple.
Comparing Prokaryotic and Eukaryotic Cells: An Overview 
Prokaryote Eukaryote 
5. They usually divide by binary 
fission. During this process, the 
DNA is copied, and the cell splits 
into two cells. Binary fission 
involves fewer structures and 
processes than eukaryotic cell 
division . 
5. Cell division usually involves 
mitosis, in which chromosomes 
replicate and an identical set is 
distributed into each of two 
nuclei. This process is guided by 
the mitotic spindle, a football - 
shaped assembly of microtubules.
The Size, Shape, and Arrangement 
of Bacterial Cells 
- Most bacteria range from 0.2 to 1.0 μm in diameter 
From 2 to 8 μm in length. 
- Most bacteria are monomorphic; they maintain a single shape. 
- Some bacteria are genetically pleomorphic., such as Rhizobium sp. 
and Corynebacterium sp. which means they can have many shapes.
Coccus (spherical) 
Bacillus (rod-shaped) 
Spiral 
Spirillum 
Vibrio 
Spirochete 
Basic Shapes
Coccus (spherical); Arrangements 
- Cocci are usually round but can be oval. 
- When cocci divide to reproduce, the cells can remain attached to one another. 
- Cocci that remain in pairs after dividing are called diplococci. 
- Those that divide and remain attached in chain like patterns are called 
streptococci. 
Plane of division 
Diplococci 
Streptococci
Coccus (spherical); Arrangements 
- Those that divide in two planes and remain in groups of four are 
known as tetrads. 
Tetrad
Coccus (spherical); Arrangements 
- Those that divide in three planes and remain attached in cubelike groups of 
eight are called sarcinae. 
Sarcinae
Coccus (spherical); Arrangements 
- Those that divide in multiple planes and form grapelike broad sheets are 
called staphylococci . 
- These group characteristics are helpful in identifying cocci. 
Staphylococci
Bacillus (rod-shaped) ; Arrangements 
- Bacilli divide only across their short axis, so there are fewer groupings of bacilli 
than of cocci. 
- Most bacilli appear as single rods . 
- Scientific name: Bacillus or shape: bacillus 
Single bacillus
Bacillus (rod-shaped) ; Arrangements 
-Diplobacilli appear in pairs after division 
Diplobacilli
Bacillus (rod-shaped) ; Arrangements 
- Streptobacilli occur in chains . 
Streptobacilli
Bacillus (rod-shaped) ; Arrangements 
- Others are oval and look so much like cocci that they are called 
coccobacilli . 
Coccobacillus
Spiral bacteria ; Arrangements 
- Spiral bacteria have one or more twists; they are never straight. 
- Bacteria that look like curved rods are called vibrios. 
Vibrio
Spiral bacteria ; Arrangements 
-Spirillum, have a helical shape, like a corkscrew, and fairly rigid 
bodies . 
- The spirilla are used propeller-like external appendages called 
flagella to move. 
Spirillum
Spiral bacteria ; Arrangements 
- Spirals they are helical and flexible are called spirochetes. 
- Spirochetes move by means of axial filaments 
Spirochete
In addition to the three basic shapes 
- There are star-shaped cells (genus Stella). 
- Rectangular, flat cells (halophilic archaea) of the genus Haloarcula . 
Star-shaped bacteria Rectangular bacteria
In addition to the three basic shapes 
-There are prokaryotes that look very much like triangles Haloarcula 
japonica 
- Or squares Holoquadratum walsbyi .
Structures External to the Cell Wall 
The external structures in the prokaryotic cell wall are; 
- Glycocalyx. 
- Flagella. 
- Axial filaments. 
- Fimbriae. 
- Pili.
1- Glycocalyx 
- Many prokaryotes secrete it on their surface. 
- Glycocalyx (meaning sugar coat) that surround cells. 
- It is a sticky, gelatinous polymer that is external to the cell wall. 
- It composed of polysaccharide, polypeptide, or both. 
- It is made inside the cell and secreted to the cell surface. 
- If the substance is organized and attached to the cell wall , the glycocalyx 
is described as a capsule. 
-If the substance is unorganized and only loosely attached to the cell wall, 
the glycocalyx is described as a slime layer. 
- A glycocalyx that helps cells in a biofilm attach to their target environment 
and to each other is called an extracellular polymeric substance (EPS). The 
EPS protects the cells It can provide nutrients.
1- Glycocalyx 
- The presence of a capsule can be determined by using negative 
staining. 
- In certain species, capsules are important for bacterial virulence . 
- Capsules often protect pathogenic bacteria from phagocytosis by 
the cells of the host. 
- Streptococcus pneumoniae caused pneumonia only when the cells 
are protected by a polysaccharide capsule. 
- Unencapsulated S. plleumoniae cells cannot cause pneumonia 
- The polysaccharide capsule of Klebsiella also prevents 
phagocytosis and allows the bacterium to adhere to and colonize the 
respiratory tract.
THE EUKARYOTIC CELL 1- The Cell Wall and Glycocalyx 
1. The cell walls of many algae and some fungi contain cellulose. 
2. The main material of fungal cell walls is chitin. 
3. Yeast cell walls consist of glucan and mannan. 
4. Animal cells are surrounded by a glycocalyx (carbohydrates), which 
strengthens the cell and provides a means of attaehment to other cells. 
5- Some of these carbohydrates are covalently bonded to proteins 
(glycoproteins) and lipids (glycolipids) in the plasma membrane that 
anchor the glycocalyx to the cell.
2- Flagella 
- Some prokaryotic cells 
have flagella (singular: 
flagellum ). 
-Flagella are relatively 
long filamentous 
appendages consisting of a 
filament that contains of 
the globular (roughly 
spherical) protein flagellin 
arranged in several chains 
that intertwine and form a 
helix around a attached to 
a hook ( consisting of a 
different protein) and basal 
body , which anchors the 
flagellum to the cell wall 
and plasma membrane.
2- Flagella
2- Flagella 
- Prokaryotic flagella rotate to push 
the cell. 
- When a bacterium moves in one 
direction for a length of time, the 
movement is called a "run" or "swim.“ 
- Random changes in direction called 
"tumbles. 
- "Tumbles" are caused by a reversal 
of flagellar rotation 
- One advantage of motility is that it 
enables a bacterium to move toward a 
favorable environment or away from a 
particular stimulus (taxis). 
- Such stimuli include chemicals 
(chemotaxis) and light (phototaxis). 
-Bacterial cells can alter the speed and 
direction of rotation of flagella and thus 
are capable of various patterns of 
motility. 
-Motility the ability of an organism to 
move by itself. 
Run 
Tumble 
Tumble 
Run 
Tumble 
A bacterium running and tumbling. Notice 
that the direction of flagellar rotation 
(blue arrows) determines which of these 
movements occurs. Gray arrows indicate 
direction of movement of the microbe.
2- Flagella 
- Bacteria that lack flagella are referred to as atrichous . 
- Flagella may be peritrichous (distributed over the entire cell) 
- Polar (at one or both poles or ends of the cell). 
- If polar, flagella may be monotrichous (a single flagellum at one pole) 
- lophotrichous (a tuft of flagella coming from one pole). 
- Amphitrichous (flagella at both poles of the cell). 
Peritrichous Monotrichous and polar 
Lophotrichous and polar Amphitrichous and polar
2- Flagella 
- Flagellar protein is an antigen. 
- The flagellar protein called H antigen is useful for distinguishing a 
variations species of gram negative bacteria . 
- For example, there are at least 50 different H antigens for E. coli. 
Those variations species identified as E. coli 0157:H7 are associated 
with food borne epidemics.
THE EUKARYOTIC CELL 2- Flagella and Cilia 
1. Flagella are few and long in relation to cell size; cilia are numerous 
and short. 
2. Flagella and cilia are used for motility, and cilia also move 
substances along the surface of the cells. 
3. Both flagella and cilia consist of an arrangement of nine pairs and 
two single microtubules. 
A micrograph of Euglena, containing 
alga, with its flagellum. 
Cilia 
A micrograph of Tetrahymena, 
with cilia.
3- Axial Filaments 
- They are structures similar to that 
of flagella (endoflagellum). 
- Spiral cells that move by an 
endoflagellum are called spirochetes. 
- One of the best-known spirochetes 
is Treponema pallidum 
- Axial filaments are anchored at one 
end of the spirochete. 
- The rotation of the filaments 
produces a movement of the outer 
sheath that propels the spirochetes in 
a spiral motion. 
- This type of movement is similar to 
the way a corkscrew moves through a 
cork. 
- This corkscrew motion probably 
enables a bacterium such as T. 
pallidum to move effectively through 
body fluids. 
Cell wall 
Axial filament 
Outer sheath 
A photomicrograph of the spirochete 
Leptospira, showing an axial filament
3- Axial Filaments 
A axial filaments wrapping around part of a 
spirochete for a cross section of axial filaments)
4- Fimbriae and Pili 
- Many gram-negative bacteria contain hairlike appendages that are 
shorter, straighter, and thinner than flagella . 
- They are used for attachment and transfer of DNA rather than for 
motility. 
- These structures, which consist of a protein called pilin arranged 
helically around a central core, are divided into two types, fimbriae 
and pili, having very different functions.
4- Fimbriae and Pili 
- Fimbriae (singular: fimbria)help cells adhere to surfaces. 
- They can number anywhere from a few to several hundred per cell 
- They are involved in forming biofilms 
- Fimbriae can also help bacteria adhere to epithelial surfaces in the 
body.
4- Fimbriae and Pili 
- The fimbriae of E. coli 0157 enable this bacterium to adhere to the 
lining of the small intestine, where it causes a severe watery diarrhea. 
- Pili (s ingular: pilus) are involved in twitching and gliding motility. 
- also, involved in DNA transfer ,such pili are called conjugation (sex) 
pili. 
- Pili are usually longer than fimbriae and number only one or two per 
cell.
References 
• Microbiology: An Introduction Plus 
MasteringMicrobiology with eText - Access Card 
Package (11th Edition) Hardcover – January 2, 2012 
by Gerard J. Tortora, Berdell R. Funke, Christine L. 
Case. 
• Some pictures from different sits.

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Presentation 3

  • 1. Microbiology An introduction Presented by D. Mona Othman Albureikan Lecture (5,6)
  • 2. Prokaryotic and Eukaryotic Cells • Prokaryotes and eukaryotes are chemically similar. • They both contain nucleic acids, proteins, lipids, and carbohydrates. • They use the same kinds of chemical reactions to metabolize food, build proteins, and store energy.
  • 3. Prokaryotic and Eukaryotic Cells • Prokaryote comes from the Greek words for prenucleus. • Eukaryote comes from the Greek words for true nucleus.
  • 4. Comparing Prokaryotic and Eukaryotic Cells: An Overview Prokaryote • One circular chromosome, not in a membrane • No histones • No organelles • Bacteria: peptidoglycan cell walls • Archaea: pseudomurein cell walls • Binary fission Eukaryote • Paired chromosomes, in nuclear membrane • Histones • Organelles • Polysaccharide cell walls • Mitotic spindle
  • 5.
  • 6. Comparing Prokaryotic and Eukaryotic Cells: An Overview Prokaryote Eukaryote 1. Their DNA is found in the cell 's nucleus, which is separated from the cytoplasm by a nuclear membrane, and the DNA is found in multiple chromosomes. 1. Their DNA is not enclosed within a membrane and is usually a singular circularly arranged chromosome. (Some bacteria, such as Vibrio ch., have two chromosomes, and some bacteria have a linearly arranged chromosome.)
  • 7. Comparing Prokaryotic and Eukaryotic Cells: An Overview Prokaryote Eukaryote 2. Their DNA is not associated with histones (special chromosomal proteins found in eukaryotes); other proteins are associated with the DNA. 2. Their DNA is consistently associated with chromosomal proteins called histones and with nonhistones.
  • 8. Comparing Prokaryotic and Eukaryotic Cells: An Overview Prokaryote Eukaryote 3. They lack membrane enclosed organelles. 3. They have a number of membrane-enclosed organelles, including mitochondria, endoplasmic retic ulum, Golgi complex, lysosomes, and sometimes chloroplasts.
  • 9. Comparing Prokaryotic and Eukaryotic Cells: An Overview Prokaryote Eukaryote 4. Their cell walls almost always contain the complex polysaccharide peptidoglycan. 4. Their cell walls, when present, are chemically simple.
  • 10. Comparing Prokaryotic and Eukaryotic Cells: An Overview Prokaryote Eukaryote 5. They usually divide by binary fission. During this process, the DNA is copied, and the cell splits into two cells. Binary fission involves fewer structures and processes than eukaryotic cell division . 5. Cell division usually involves mitosis, in which chromosomes replicate and an identical set is distributed into each of two nuclei. This process is guided by the mitotic spindle, a football - shaped assembly of microtubules.
  • 11. The Size, Shape, and Arrangement of Bacterial Cells - Most bacteria range from 0.2 to 1.0 μm in diameter From 2 to 8 μm in length. - Most bacteria are monomorphic; they maintain a single shape. - Some bacteria are genetically pleomorphic., such as Rhizobium sp. and Corynebacterium sp. which means they can have many shapes.
  • 12. Coccus (spherical) Bacillus (rod-shaped) Spiral Spirillum Vibrio Spirochete Basic Shapes
  • 13. Coccus (spherical); Arrangements - Cocci are usually round but can be oval. - When cocci divide to reproduce, the cells can remain attached to one another. - Cocci that remain in pairs after dividing are called diplococci. - Those that divide and remain attached in chain like patterns are called streptococci. Plane of division Diplococci Streptococci
  • 14. Coccus (spherical); Arrangements - Those that divide in two planes and remain in groups of four are known as tetrads. Tetrad
  • 15. Coccus (spherical); Arrangements - Those that divide in three planes and remain attached in cubelike groups of eight are called sarcinae. Sarcinae
  • 16. Coccus (spherical); Arrangements - Those that divide in multiple planes and form grapelike broad sheets are called staphylococci . - These group characteristics are helpful in identifying cocci. Staphylococci
  • 17. Bacillus (rod-shaped) ; Arrangements - Bacilli divide only across their short axis, so there are fewer groupings of bacilli than of cocci. - Most bacilli appear as single rods . - Scientific name: Bacillus or shape: bacillus Single bacillus
  • 18. Bacillus (rod-shaped) ; Arrangements -Diplobacilli appear in pairs after division Diplobacilli
  • 19. Bacillus (rod-shaped) ; Arrangements - Streptobacilli occur in chains . Streptobacilli
  • 20. Bacillus (rod-shaped) ; Arrangements - Others are oval and look so much like cocci that they are called coccobacilli . Coccobacillus
  • 21. Spiral bacteria ; Arrangements - Spiral bacteria have one or more twists; they are never straight. - Bacteria that look like curved rods are called vibrios. Vibrio
  • 22. Spiral bacteria ; Arrangements -Spirillum, have a helical shape, like a corkscrew, and fairly rigid bodies . - The spirilla are used propeller-like external appendages called flagella to move. Spirillum
  • 23. Spiral bacteria ; Arrangements - Spirals they are helical and flexible are called spirochetes. - Spirochetes move by means of axial filaments Spirochete
  • 24. In addition to the three basic shapes - There are star-shaped cells (genus Stella). - Rectangular, flat cells (halophilic archaea) of the genus Haloarcula . Star-shaped bacteria Rectangular bacteria
  • 25. In addition to the three basic shapes -There are prokaryotes that look very much like triangles Haloarcula japonica - Or squares Holoquadratum walsbyi .
  • 26. Structures External to the Cell Wall The external structures in the prokaryotic cell wall are; - Glycocalyx. - Flagella. - Axial filaments. - Fimbriae. - Pili.
  • 27. 1- Glycocalyx - Many prokaryotes secrete it on their surface. - Glycocalyx (meaning sugar coat) that surround cells. - It is a sticky, gelatinous polymer that is external to the cell wall. - It composed of polysaccharide, polypeptide, or both. - It is made inside the cell and secreted to the cell surface. - If the substance is organized and attached to the cell wall , the glycocalyx is described as a capsule. -If the substance is unorganized and only loosely attached to the cell wall, the glycocalyx is described as a slime layer. - A glycocalyx that helps cells in a biofilm attach to their target environment and to each other is called an extracellular polymeric substance (EPS). The EPS protects the cells It can provide nutrients.
  • 28. 1- Glycocalyx - The presence of a capsule can be determined by using negative staining. - In certain species, capsules are important for bacterial virulence . - Capsules often protect pathogenic bacteria from phagocytosis by the cells of the host. - Streptococcus pneumoniae caused pneumonia only when the cells are protected by a polysaccharide capsule. - Unencapsulated S. plleumoniae cells cannot cause pneumonia - The polysaccharide capsule of Klebsiella also prevents phagocytosis and allows the bacterium to adhere to and colonize the respiratory tract.
  • 29. THE EUKARYOTIC CELL 1- The Cell Wall and Glycocalyx 1. The cell walls of many algae and some fungi contain cellulose. 2. The main material of fungal cell walls is chitin. 3. Yeast cell walls consist of glucan and mannan. 4. Animal cells are surrounded by a glycocalyx (carbohydrates), which strengthens the cell and provides a means of attaehment to other cells. 5- Some of these carbohydrates are covalently bonded to proteins (glycoproteins) and lipids (glycolipids) in the plasma membrane that anchor the glycocalyx to the cell.
  • 30. 2- Flagella - Some prokaryotic cells have flagella (singular: flagellum ). -Flagella are relatively long filamentous appendages consisting of a filament that contains of the globular (roughly spherical) protein flagellin arranged in several chains that intertwine and form a helix around a attached to a hook ( consisting of a different protein) and basal body , which anchors the flagellum to the cell wall and plasma membrane.
  • 32.
  • 33. 2- Flagella - Prokaryotic flagella rotate to push the cell. - When a bacterium moves in one direction for a length of time, the movement is called a "run" or "swim.“ - Random changes in direction called "tumbles. - "Tumbles" are caused by a reversal of flagellar rotation - One advantage of motility is that it enables a bacterium to move toward a favorable environment or away from a particular stimulus (taxis). - Such stimuli include chemicals (chemotaxis) and light (phototaxis). -Bacterial cells can alter the speed and direction of rotation of flagella and thus are capable of various patterns of motility. -Motility the ability of an organism to move by itself. Run Tumble Tumble Run Tumble A bacterium running and tumbling. Notice that the direction of flagellar rotation (blue arrows) determines which of these movements occurs. Gray arrows indicate direction of movement of the microbe.
  • 34. 2- Flagella - Bacteria that lack flagella are referred to as atrichous . - Flagella may be peritrichous (distributed over the entire cell) - Polar (at one or both poles or ends of the cell). - If polar, flagella may be monotrichous (a single flagellum at one pole) - lophotrichous (a tuft of flagella coming from one pole). - Amphitrichous (flagella at both poles of the cell). Peritrichous Monotrichous and polar Lophotrichous and polar Amphitrichous and polar
  • 35. 2- Flagella - Flagellar protein is an antigen. - The flagellar protein called H antigen is useful for distinguishing a variations species of gram negative bacteria . - For example, there are at least 50 different H antigens for E. coli. Those variations species identified as E. coli 0157:H7 are associated with food borne epidemics.
  • 36. THE EUKARYOTIC CELL 2- Flagella and Cilia 1. Flagella are few and long in relation to cell size; cilia are numerous and short. 2. Flagella and cilia are used for motility, and cilia also move substances along the surface of the cells. 3. Both flagella and cilia consist of an arrangement of nine pairs and two single microtubules. A micrograph of Euglena, containing alga, with its flagellum. Cilia A micrograph of Tetrahymena, with cilia.
  • 37. 3- Axial Filaments - They are structures similar to that of flagella (endoflagellum). - Spiral cells that move by an endoflagellum are called spirochetes. - One of the best-known spirochetes is Treponema pallidum - Axial filaments are anchored at one end of the spirochete. - The rotation of the filaments produces a movement of the outer sheath that propels the spirochetes in a spiral motion. - This type of movement is similar to the way a corkscrew moves through a cork. - This corkscrew motion probably enables a bacterium such as T. pallidum to move effectively through body fluids. Cell wall Axial filament Outer sheath A photomicrograph of the spirochete Leptospira, showing an axial filament
  • 38. 3- Axial Filaments A axial filaments wrapping around part of a spirochete for a cross section of axial filaments)
  • 39. 4- Fimbriae and Pili - Many gram-negative bacteria contain hairlike appendages that are shorter, straighter, and thinner than flagella . - They are used for attachment and transfer of DNA rather than for motility. - These structures, which consist of a protein called pilin arranged helically around a central core, are divided into two types, fimbriae and pili, having very different functions.
  • 40. 4- Fimbriae and Pili - Fimbriae (singular: fimbria)help cells adhere to surfaces. - They can number anywhere from a few to several hundred per cell - They are involved in forming biofilms - Fimbriae can also help bacteria adhere to epithelial surfaces in the body.
  • 41. 4- Fimbriae and Pili - The fimbriae of E. coli 0157 enable this bacterium to adhere to the lining of the small intestine, where it causes a severe watery diarrhea. - Pili (s ingular: pilus) are involved in twitching and gliding motility. - also, involved in DNA transfer ,such pili are called conjugation (sex) pili. - Pili are usually longer than fimbriae and number only one or two per cell.
  • 42. References • Microbiology: An Introduction Plus MasteringMicrobiology with eText - Access Card Package (11th Edition) Hardcover – January 2, 2012 by Gerard J. Tortora, Berdell R. Funke, Christine L. Case. • Some pictures from different sits.