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Super-muscly pigs created
by small genetic tweak
Masume mohamadian
Jin-SooKim,a molecularbiologist at SeoulNationalUniversity
MSTN
Cytogenetic Location: 2q32.2
The official name of this gene is “myostatin.”
• Transcription activator-like effectors
To introduce this mutation in pigs, Kim used a gene-
editing technology called a TALEN, which consists of a
DNA-cutting enzyme attached to a DNA-binding protein.
The protein guides the cutting enzyme to a specific gene
inside cells, in this case in MSTN, which it then cuts. The
cell’s natural repair system stitches the DNA back
together, but some base pairs are often deleted or added in
the process, rendering the gene dysfunctional.
TALEN
Structure of TALEN
• In nature, TALs are DNA binding proteins from
bacteria that infect plants
• DNA binding is mediated by 34 bp amino acid
repeats, which differ at amino acids 12 and 13.
These “repeat variable diresidues”, or RVDs
• Each RVD binds one nucleotide
Nuclease domains are FOK 1 s
Repair
 The first is homologous recombination (HR)
 The second major mechanism for DSB repair is nonhomologous end joining
(NHEJ)
double-strand breaks (DSBs)
CRISPR/Cas9
the team is now doing the same experiment with another,
newer gene-editing technology called CRISPR/Cas9
CRISPR/ Cas system

CRISPR/ Cas modules are adaptive immunity systems
that are encodedby mostarchaeaand many bacteriaand
that act against invading genetic elements,such as phage
and plasmids
40%bacteria and 90% archaea
• CRISPR= Clustered Regularly Interspaced Short
Palindromic Repeats
• Cas= CRISPR-associated proteins
CRISPR/ Cas system
There are 3 steps in the CRISPR–Cas invader
defense pathway:
• 1. Adaptation
• 2. RNA processing (CRISPR RNA biogenesis)
• 3. RNA interference (Invader silencing)
Which should I use, TALEN or CRISPR?
recent improvements in the technology, such as the use of
double nickases, truncated guide RNAs, and a Cas9-Fok I fusion,
improve CRISPR target site specificity.
RNAi and genome editing
• RNAi-mediated knockdown is the most common strategy for
ablating gene function in higher eukaryotes. However, there are a
few key differences between RNAi and genome editing. First, RNAi
does not completely shut off the gene . Rather, gene expression is
down-regulated post-transcriptionally, without changing the
genetic code. Some functional RNA or protein remains and is
translated. So, the RNAi strategy is a “knockdown”. Gene function is
reduced, not eliminated. In genome editing, on the other hand, the
genetic code is changed, and attenuation of gene expression is
usually complete, leading to a “knockout”. The decision on whether
to use RNAi or genome editing for attenuating gene expression
depends on the goals of the experiment.
References
• Super-muscly pigs created by small genetic tweak. Jin
soo kim at nature
• ZFN, TALEN and CRISPR/Cas-based methods for
genome engineering .Thomas Gaj
• Genome Editing Technology From GeneCopoeia,
Inc.
Ed Davis
• Editing our DNA with Molecular Scissors at The Tech
Museum of Innovation
• RNA-Guided Endonuclease at toolgene.com
• Advances in genome editing technology and its
promising application in evolutionary and ecological
studies. Lei Chen
Super-muscly pigs tweaked

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Super-muscly pigs tweaked

  • 1. Super-muscly pigs created by small genetic tweak Masume mohamadian
  • 2.
  • 3. Jin-SooKim,a molecularbiologist at SeoulNationalUniversity
  • 4. MSTN Cytogenetic Location: 2q32.2 The official name of this gene is “myostatin.”
  • 5. • Transcription activator-like effectors To introduce this mutation in pigs, Kim used a gene- editing technology called a TALEN, which consists of a DNA-cutting enzyme attached to a DNA-binding protein. The protein guides the cutting enzyme to a specific gene inside cells, in this case in MSTN, which it then cuts. The cell’s natural repair system stitches the DNA back together, but some base pairs are often deleted or added in the process, rendering the gene dysfunctional. TALEN
  • 6. Structure of TALEN • In nature, TALs are DNA binding proteins from bacteria that infect plants • DNA binding is mediated by 34 bp amino acid repeats, which differ at amino acids 12 and 13. These “repeat variable diresidues”, or RVDs • Each RVD binds one nucleotide
  • 7.
  • 9. Repair  The first is homologous recombination (HR)  The second major mechanism for DSB repair is nonhomologous end joining (NHEJ) double-strand breaks (DSBs)
  • 10. CRISPR/Cas9 the team is now doing the same experiment with another, newer gene-editing technology called CRISPR/Cas9
  • 12.  CRISPR/ Cas modules are adaptive immunity systems that are encodedby mostarchaeaand many bacteriaand that act against invading genetic elements,such as phage and plasmids 40%bacteria and 90% archaea
  • 13. • CRISPR= Clustered Regularly Interspaced Short Palindromic Repeats • Cas= CRISPR-associated proteins
  • 14. CRISPR/ Cas system There are 3 steps in the CRISPR–Cas invader defense pathway: • 1. Adaptation • 2. RNA processing (CRISPR RNA biogenesis) • 3. RNA interference (Invader silencing)
  • 15.
  • 16.
  • 17.
  • 18.
  • 19. Which should I use, TALEN or CRISPR? recent improvements in the technology, such as the use of double nickases, truncated guide RNAs, and a Cas9-Fok I fusion, improve CRISPR target site specificity.
  • 20. RNAi and genome editing • RNAi-mediated knockdown is the most common strategy for ablating gene function in higher eukaryotes. However, there are a few key differences between RNAi and genome editing. First, RNAi does not completely shut off the gene . Rather, gene expression is down-regulated post-transcriptionally, without changing the genetic code. Some functional RNA or protein remains and is translated. So, the RNAi strategy is a “knockdown”. Gene function is reduced, not eliminated. In genome editing, on the other hand, the genetic code is changed, and attenuation of gene expression is usually complete, leading to a “knockout”. The decision on whether to use RNAi or genome editing for attenuating gene expression depends on the goals of the experiment.
  • 21.
  • 22. References • Super-muscly pigs created by small genetic tweak. Jin soo kim at nature • ZFN, TALEN and CRISPR/Cas-based methods for genome engineering .Thomas Gaj • Genome Editing Technology From GeneCopoeia, Inc. Ed Davis • Editing our DNA with Molecular Scissors at The Tech Museum of Innovation • RNA-Guided Endonuclease at toolgene.com • Advances in genome editing technology and its promising application in evolutionary and ecological studies. Lei Chen