This document lists Jacob M. Kowalewski's publications, including 12 peer-reviewed articles, 5 selected peer-reviewed conference contributions, and 3 theses. The peer-reviewed articles cover a range of topics including cell migration, cellular responses to heterogeneity, inertial focusing in curved channels, astrocyte and neuronal receptor dynamics, natural killer cell migration, integrin-mediated cell attachment, mechanical properties of primary cilia, quantum dot recombination, erythropoietin modulation of astrocytes, microfluidic devices for flow studies, intracellular calcium oscillations, and allosteric changes of the NMDA receptor.

1. List of publications
Jacob M. Kowalewski
Updated: August 22, 2015
1. Peer-reviewed articles
1. Jacob M. Kowalewski, Hamdah Shafqat-Abbasi, Mehrdad Jafari-
Mamaghani, Bereket Endrias Ganebo, Xiaowei Gong, Staffan Strömblad, and
John G. Lock. Disentangling membrane dynamics and cell migration; dif-
ferential influences of f-actin and cell-matrix adhesions. PLoS ONE, 10(8):
e0135204, 08 2015.
http://dx.doi.org/10.1371%2Fjournal.pone.0135204.
2. Alexa Kiss, Xiaowei Gong, Jacob M. Kowalewski, Hamdah Shafqat-Abbasi,
Staffan Strömblad, and John G. Lock. Non-monotonic cellular responses to
heterogeneity in talin protein expression-level. Integr. Biol., Advance Article,
2015.
http://dx.doi.org/10.1039/C4IB00291A.
3. Harisha Ramachandraiah, Sahar Ardabili, Asim M Faridi, Jesper Gantelius,
Jacob M. Kowalewski, Gustaf Mårtensson, and Aman Russom. Dean flow-
coupled inertial focusing in curved channels. Biomicrofluidics, 8(3):034117,
2014.
http://dx.doi.org/10.1063/1.4884306.
4. Amulya Nidhi Shrivastava, Jacob M. Kowalewski, Marianne Renner, Luc
Bousset, Annette Koulakoff, Ronald Melki, Christian Giaume, and Antoine
Triller. β-amyloid and ATP-induced diffusional trapping of astrocyte and
neuronal metabotropic glutamate type-5 receptors. Glia, 61(10), 2013.
http://dx.doi.org/10.1002/glia.22548.
5. Mohammad Ali Khorshidi, Bruno Vanherberghen, Jacob M. Kowalewski,
Kym R. Garrod, Sara Lindström, Helene Andersson-Svahn, Hjalmar Bris-
mar, Michael D. Cahalan, and Björn Önfelt. Analysis of transient migration
behavior of natural killer cells imaged in situ and in vitro. Integr. Biol., 3:
770–778, 2011.
http://dx.doi.org/10.1039/C1IB00007A.
6. Zhilun Li, John G. Lock, Helene Olofsson, Jacob M. Kowalewski, Stef-
fen Teller, Yajuan Liu, Hongquan Zhang, and Staffan Strömblad. Integrin-
mediated Cell Attachment Induces a PAK4-dependent Feedback Loop Regu-
lating Cell Adhesion through Modified Integrin alpha v beta 5 Clustering and
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2. Turnover. Mol. Biol. Cell, 21(19):3317–3329, 2010.
http://www.molbiolcell.org/cgi/content/abstract/21/19/3317.
7. Susanna Rydholm, Gordon Zwartz, Jacob M. Kowalewski, Padideh Kamali-
Zare, Thomas Frisk, and Hjalmar Brismar. Mechanical properties of primary
cilia regulate the response to fluid flow. Am. J. Physiol. Renal Physiol., 298
(5):F1096–1102, 2010.
http://ajprenal.physiology.org/cgi/content/abstract/298/5/F1096.
8. Y. Fu, H. Ågren, J. M. Kowalewski, H. Brismar, J. Wu, Y. Yue, N. Dai, and
L. Thylen. Radiative and nonradiative recombination of photoexcited exci-
tons in multi-shell-coated CdSe/CdS/ZnS quantum dots. EPL (Europhysics
Letters), 86(3):37003 (6pp), 2009.
http://stacks.iop.org/0295-5075/86/37003.
9. Eli Gunnarson, Yutong Song, Jacob M. Kowalewski, Hjalmar Brismar,
Michael Brines, Anthony Cerami, Ulf Andersson, Marina Zelenina, and Anita
Aperia. Erythropoietin modulation of astrocyte water permeability as a com-
ponent of neuroprotection. Proc. Natl Acad. Sci. USA, 106(5):1602–1607,
2009.
http://www.pnas.org/content/106/5/1602.abstract.
10. Susanna Rydholm, Thomas Frisk, Jacob M. Kowalewski, Helene Andersson
Svahn, Göran Stemme, and Hjalmar Brismar. Microfluidic devices for stud-
ies of primary cilium mediated cellular response to dynamic flow conditions.
Biomedical Microdevices, 10(4):555–560, 2008.
http://www.springerlink.com/content/315522457g605601.
11. Jacob M. Kowalewski, Per Uhlen, Hiroaki Kitano, and Hjalmar Brismar.
Modeling the impact of store-operated Ca2+
entry on intracellular Ca2+
oscil-
lations. Mathematical Biosciences, 204(2):232, 2006.
http://dx.doi.org/10.1016/j.mbs.2006.03.001.
12. Lena Scott, Sergey Zelenin, Seth Malmersjö, Jacob M. Kowalewski,
Eivor Zettergren Markus, Angus C. Nairn, Paul Greengard, Hjalmar Brismar,
and Anita Aperia. Allosteric changes of the NMDA receptor trap diffusible
dopamine 1 receptors in spines. Proc. Natl Acad. Sci. USA, 103(3):762–767,
2006.
http://www.pnas.org/cgi/content/abstract/0505557103v1.
2. Selected peer-reviewed conference contributions
1. Jacob M. Kowalewski, Hamdah S. Abbasi, Mehrdad J. Mamaghani,
Bereket Endrias Ganebo, John G. Lock, and Staffan Strömblad. Multivariate
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3. statistical analysis of cell migration using automated image processing. In 14th
International Conference on Systems Biology, Copenhagen, Denmark, August
2013.
2. J. M. Kowalewski, E. Amigou, C. Giaume, and A. Triller. Dynamics of
metabotropic glutamate receptor 5 in astrocytes through single particle tracking
and calcium imaging. In Neuroscience 2010, number 344.14/H6, San Diego,
CA, November 2010. Society for Neuroscience.
3. E. Gunnarson, M. Zelenina, Y. Song, J. M. Kowalewski, H. Brismar,
M. Brines, A. Cerami, U. Andersson, and A. Aperia. Erythropoietin modu-
lation of astrocyte water permeability: a potential component of neuroprotec-
tion. In Neuroscience 2008, number 2008-S-112879-SfN, Washington, DC,
November 2008. Society for Neuroscience.
4. Padideh Kamali-Zare, Jacob M. Kowalewski, Anita Aperia, and Hjalmar
Brismar. Diffusion limited space (DLS) and its impact on water and K+
home-
ostasis in kidney principal cells and astrocytes. In 9th International Conference
on Systems Biology, page 107, Göteborg, Sweden, August 2008.
5. Padideh Kamali-Zare, Jacob M. Kowalewski, and Hjalmar Brismar. Modeling
the role of aquaporin-4 in astrocyte K+
spatial buffering. In 9th International
Conference on Systems Biology, page 108, Göteborg, Sweden, August 2008.
6. Hjalmar Brismar, Lena Scott, Seth Malmersjö, Jacob M. Kowalewski, Eivor
Zettergren Markus, Brun Ulfhake, Angus C. Nairn, Paul Greengard, and Anita
Aperia. Laterally diffusing dopamine 1 receptors are recruited to dendrtic
spines by interaction with allosterically changed NMDA receptors. In Neu-
roscience 2005, number 608.2, Washington, DC, November 2005. Society for
Neuroscience.
7. Jacob M. Kowalewski, Per Uhlén, Hiroaki Kitano, and Hjalmar Brismar. Gen-
eration of slow calcium oscillations in spatial cell models driven by store oper-
ated calcium entry. In 5th International Conference on Systems Biology, page
223, Heidelberg, Germany, October 2004. Dechema e.V.
3. Theses
1. Jacob Kowalewski. Modeling and Data Analysis in Cellular Biophysics. PhD
thesis, KTH, Applied Physics, 2009. ISBN 978-91-7415-492-4.
http://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-11368.
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4. 2. Jacob Kowalewski. Mathematical Models in Cellular Biophysics. KTH, Ap-
plied Physics, 2007. ISBN 978-91-7178-660-9. Licentiate Thesis in Physics.
http://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-4361.
3. Jacob Kowalewski. Mathematical modelling of intra-cellular Ca2+
signalling.
Master’s thesis, School of Engineering Physics, Department of Physics, Royal
Institute of Technology, Stockholm. TRITA-FYS-2003:49, September 2003.
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