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Scientific Literature Three Pass Reading
Types of Scientific Literature
Journal Articles
Letter: Short, immediate, major significance, wider audience
Original Article
Review Article
Monographs
Collection of years/decades of a body of specialised work
Handbooks/ Encyclopaedias
Expert summary for wider audience
Textbooks
Educating beginners
Evolution
to a
Theory
Organisation of a Technical Report
 Title: Short sentence for key contribution
 Author and Affiliation
 Abstract
 Introduction
 Literature Survey
 Methods (Experimental or Theoretical)
 Results and Discussion
 Conclusion
 References
The Three Pass Approach
The Three passes, Adapted from Keshav [2007]
1. Observe, 5–15 mins
2. Judge, 10–15 mins
3. Understand, few hours
The First Pass
 Read Title, Abstract, and Introduction
 Browse through section headings, skip contents
 Read Conclusions
First Pass Notes
Note the following points
 Bibliographic details (underline communicating author)
 Type of article: Letter, Original, Review
 Nature of the work: Expt., Comp. Simul., Theory
 DOI: http://dx.doi.org/ 10.1038/nature11311
 Digital Object Identifier: Persistent URLs for online documents
 Broad area: Look for keywords in title and abstract
First Pass Notes
 What is the main question addressed?
 What is the answer provided?
 New observation reported ?
 Is a new hypothesis being proposed ?
 Existing hypothesis being tested on a new system ?
 First pass should not be critical, just note down objectively.
 Summarise in less than 30 words
Should take from 5 to 15 minutes
Second Pass: Judgemental
 Look at Figures and Illustrations
 Graphs have error bars (statistically significant conclusion)
 Axis properly marked (not shoddy or casual reporting)
 Figures are neatly drawn
 Is the problem stated clearly ?
 Is the solution properly justified ?
 Is the methodology adopted appropriate ?
Second Pass: Judgemental
 Has the author published similar work (look for references and
citations in Scopus) ?
 Confidence in author’s experience
 Incremental additions may not be significant
 Note down your judgements, including the problem
 Write Statement and thesis in your own words.
Should take another 15 minutes.
Third Pass: Understanding
Understanding and Reviewing
 Read methodology carefully
 Read relevant literature (cited refs and books)
 Read every sentence critically and the assumptions made
Mental Recreation of work
 If you were to repeat how would you have proceeded
 Verify mathematical proofs, where possible.
 Brings more clarity and insights
 Presents ideas for alternate approaches and extensions
 Are there any missed literature?
 Write down the overall purpose as you see it: Problem & Thesis
 Does the introduction establish this ?
 Body of the Work
 Is the paper focussed on this goal ?
 Are the reasons or assumptions, that justify the claim valid ?
Critically Reviewing an Article
Critically Reviewing an Article
 Body of the Work: Are there sufficient and reliable evidence to
support the reasons?
 Conclusion: Is it strong finish or simply a weak summary of the
paper?
 Check the grammar and spelling, and note down typos.
 Examine the citations (completeness, correctness, and formatting
style)
 Your final comment: Are you convinced by the reasoning & the
evidence?
Sources for Literature
Search Resources
• SCOPUS (for general search)
• ISI Web of Knowledge and Citebase (citation searches)
• Engineering Village Compendex and Inspec (general search)
• Google Scholar, Yahoo Mindset (for web search of scholarly
articles)
• Patents search (Google, Free-Patents, Scopus Patents Tab)
• Wikipedia, Google, may be used to get broad ideas but cannot
yet be considered authoritative search.
Review Journals Search
• Annual Review series
• Advances series
• Reviews of . . . series
Starting Points
• Keywords Search
• Problem description statement
• Article/Report given to you
• Advisor: Ask, Validate your list
• Citation Based
• Given a bibliographic information (Source title, year, volume,
page)
Sources for Literature
Keyword vs Citation Search
Keyword Based Citation Based
● Best when no relevant article is
known
● Wrong keywords =>
considerable delay
● Chances of missing an important
work could be high
● Experience for good starting
guess
● Each survey is freshly done
● Easy to manage initially
● Best when a relevant article is
known
● Related articles found instantly,
mostly relevant
● Ancestory chain of relations
shows important work
● Only one article required
● Builds upon the literature survey
done by others
● Can get messy to manage
Traditional Method
 Use a separate hardbound book.
 Serially number the articles as you get them
 Include bibliographic info
 Summarise your first pass read notes.
 Categorise (last section of the book)
 Put numbers (labels) under categories
 Use categories as starting point of writing report
Organising Literature
Taking Electronic Notes
During first and second pass:
1. Highlight important sentences in PDF (use Acrobat, PDF-
Xchange viewer or android and Apple apps on a tablet)
2. Take notes on a word processing software (Google Docs,
LibreOffice, Word)
3. Organise by Topic and Ascending year of publication
4. Copy & paste the downloaded filename, DOI
5. Copy & paste highlighted sentences, figures
6. All notes in one place. Helpful in analysing literature.
Taking Electronic Notes
http://satzsrinivasan.blogspot.in/2010/07/mrbrain-part-3-mind-mapping-technique.html
Mind Map: An Example
4 rm scientific literature

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4 rm scientific literature

  • 2. Types of Scientific Literature Journal Articles Letter: Short, immediate, major significance, wider audience Original Article Review Article Monographs Collection of years/decades of a body of specialised work Handbooks/ Encyclopaedias Expert summary for wider audience Textbooks Educating beginners Evolution to a Theory
  • 3. Organisation of a Technical Report  Title: Short sentence for key contribution  Author and Affiliation  Abstract  Introduction  Literature Survey  Methods (Experimental or Theoretical)  Results and Discussion  Conclusion  References
  • 4. The Three Pass Approach The Three passes, Adapted from Keshav [2007] 1. Observe, 5–15 mins 2. Judge, 10–15 mins 3. Understand, few hours The First Pass  Read Title, Abstract, and Introduction  Browse through section headings, skip contents  Read Conclusions
  • 5. First Pass Notes Note the following points  Bibliographic details (underline communicating author)  Type of article: Letter, Original, Review  Nature of the work: Expt., Comp. Simul., Theory  DOI: http://dx.doi.org/ 10.1038/nature11311  Digital Object Identifier: Persistent URLs for online documents  Broad area: Look for keywords in title and abstract
  • 6. First Pass Notes  What is the main question addressed?  What is the answer provided?  New observation reported ?  Is a new hypothesis being proposed ?  Existing hypothesis being tested on a new system ?  First pass should not be critical, just note down objectively.  Summarise in less than 30 words Should take from 5 to 15 minutes
  • 7. Second Pass: Judgemental  Look at Figures and Illustrations  Graphs have error bars (statistically significant conclusion)  Axis properly marked (not shoddy or casual reporting)  Figures are neatly drawn  Is the problem stated clearly ?  Is the solution properly justified ?  Is the methodology adopted appropriate ?
  • 8. Second Pass: Judgemental  Has the author published similar work (look for references and citations in Scopus) ?  Confidence in author’s experience  Incremental additions may not be significant  Note down your judgements, including the problem  Write Statement and thesis in your own words. Should take another 15 minutes.
  • 9. Third Pass: Understanding Understanding and Reviewing  Read methodology carefully  Read relevant literature (cited refs and books)  Read every sentence critically and the assumptions made Mental Recreation of work  If you were to repeat how would you have proceeded  Verify mathematical proofs, where possible.  Brings more clarity and insights  Presents ideas for alternate approaches and extensions
  • 10.  Are there any missed literature?  Write down the overall purpose as you see it: Problem & Thesis  Does the introduction establish this ?  Body of the Work  Is the paper focussed on this goal ?  Are the reasons or assumptions, that justify the claim valid ? Critically Reviewing an Article
  • 11. Critically Reviewing an Article  Body of the Work: Are there sufficient and reliable evidence to support the reasons?  Conclusion: Is it strong finish or simply a weak summary of the paper?  Check the grammar and spelling, and note down typos.  Examine the citations (completeness, correctness, and formatting style)  Your final comment: Are you convinced by the reasoning & the evidence?
  • 12. Sources for Literature Search Resources • SCOPUS (for general search) • ISI Web of Knowledge and Citebase (citation searches) • Engineering Village Compendex and Inspec (general search) • Google Scholar, Yahoo Mindset (for web search of scholarly articles) • Patents search (Google, Free-Patents, Scopus Patents Tab) • Wikipedia, Google, may be used to get broad ideas but cannot yet be considered authoritative search. Review Journals Search • Annual Review series • Advances series • Reviews of . . . series
  • 13. Starting Points • Keywords Search • Problem description statement • Article/Report given to you • Advisor: Ask, Validate your list • Citation Based • Given a bibliographic information (Source title, year, volume, page) Sources for Literature
  • 14. Keyword vs Citation Search Keyword Based Citation Based ● Best when no relevant article is known ● Wrong keywords => considerable delay ● Chances of missing an important work could be high ● Experience for good starting guess ● Each survey is freshly done ● Easy to manage initially ● Best when a relevant article is known ● Related articles found instantly, mostly relevant ● Ancestory chain of relations shows important work ● Only one article required ● Builds upon the literature survey done by others ● Can get messy to manage
  • 15. Traditional Method  Use a separate hardbound book.  Serially number the articles as you get them  Include bibliographic info  Summarise your first pass read notes.  Categorise (last section of the book)  Put numbers (labels) under categories  Use categories as starting point of writing report Organising Literature
  • 16. Taking Electronic Notes During first and second pass: 1. Highlight important sentences in PDF (use Acrobat, PDF- Xchange viewer or android and Apple apps on a tablet) 2. Take notes on a word processing software (Google Docs, LibreOffice, Word) 3. Organise by Topic and Ascending year of publication 4. Copy & paste the downloaded filename, DOI 5. Copy & paste highlighted sentences, figures 6. All notes in one place. Helpful in analysing literature.