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A Tour of the Cell ,[object Object],[object Object],[object Object],Cell structure is correlated to cellular function
Cell Theory ,[object Object],[object Object],[object Object],[object Object]
[object Object],[object Object],[object Object],1 m 0.1 nm 10 m 0.1 m 1 cm 1 mm 100 µm 10 µ m 1 µ m 100 nm 10 nm 1 nm Length of some nerve and  muscle cells Chicken egg Frog egg Most plant  and Animal  cells Smallest bacteria Viruses Ribosomes Proteins Lipids Small molecules Atoms Nucleus Most bacteria Mitochondrion Light microscope Electron microscope Electron microscope Figure 6.2 Human height
[object Object],TECHNIQUE RESULT Brightfield (unstained specimen).  Passes light directly through specimen.  Unless cell is naturally pigmented or  artificially stained, image has little  contrast. [Parts (a)–(d) show a  human cheek epithelial cell.] (a) Brightfield (stained specimen).   Staining with various dyes enhances  contrast, but most staining procedures  require that cells be fixed (preserved). (b) Phase-contrast.  Enhances contrast  in unstained cells by amplifying  variations in density within specimen;  especially useful for examining living,  unpigmented cells. (c) 50 µm Figure 6.3
Differential-interference-contrast (Nomarski).   Like  phase-contrast microscopy, it uses optical  modifications to exaggerate differences in density, making the image appear almost 3D. Fluorescence.  Shows the locations of specific  molecules in the cell by tagging the molecules  with fluorescent dyes or antibodies. These  fluorescent substances absorb ultraviolet  radiation and emit visible light, as shown  here in a cell from an artery. Confocal.  Uses lasers and special optics for  “ optical sectioning” of fluorescently-stained  specimens. Only a single plane of focus is  illuminated; out-of-focus fluorescence above  and below the plane is subtracted by a computer.  A sharp image results, as seen in stained nervous  tissue (top), where nerve cells are green, support  cells are red, and regions of overlap are yellow. A  standard fluorescence micrograph (bottom) of this  relatively thick tissue is blurry. 50 µm 50 µm (d) (e) (f)
[object Object],[object Object]
[object Object],[object Object],Figure 6.4 (a) TECHNIQUE RESULTS Scanning electron micro- scopy (SEM).  Micrographs taken with a scanning electron micro- scope show a 3D image of the  surface of a specimen. This SEM  shows the surface of a cell from a  rabbit trachea (windpipe) covered  with motile organelles called cilia.  Beating of the cilia helps move inhaled debris upward toward  the throat. (a) Cilia 1 µm
[object Object],[object Object],Figure 6.4 (b) Transmission electron micro- scopy (TEM).  A transmission electron  microscope profiles a thin section of a  specimen. Here we see a section through  a tracheal cell, revealing its ultrastructure.  In preparing the TEM, some cilia were cut  along their lengths, creating longitudinal  sections, while other cilia were cut straight  across, creating cross sections. (b) Longitudinal section of cilium Cross section of cilium 1 µm
Isolating Organelles by Cell Fractionation ,[object Object],[object Object],[object Object],[object Object],Tissue cells Homogenization Homogenate 1000  g (1000 times the force of gravity) 10 min Differential centrifugation Supernatant poured into next tube 20,000  g 20 min Pellet rich in nuclei and cellular debris Pellet rich in mitochondria (and chloro- plasts if cells are from a  plant) Pellet rich in “ microsomes” (pieces of  plasma mem- branes and cells’ internal membranes) Pellet rich in ribosomes 150,000  g 3 hr 80,000  g 60 min
Comparing Prokaryotic and Eukaryotic Cells ,[object Object],[object Object],[object Object],[object Object],[object Object]
[object Object],[object Object],[object Object]
Figure 6.6 A, B (b) A thin section through the bacterium  Bacillus coagulans (TEM) Pili:  attachment structures on the surface of some prokaryotes Nucleoid:  region where the cell’s DNA is located (not enclosed by a membrane) Ribosomes:  organelles that synthesize proteins Plasma membrane:  membrane enclosing the cytoplasm Cell wall:  rigid structure outside the plasma membrane Capsule:  jelly-like outer coating of many prokaryotes Flagella:  locomotion organelles of some bacteria (a) A typical rod-shaped bacterium  0.5 µm Bacterial chromosome
[object Object],[object Object],[object Object]
[object Object],[object Object],Figure 6.7 The logistics of carrying out cellular metabolism sets limits on the size of cells  1.2 Surface area increases while total volume remains constant 5 1 1 Total surface area  (height    width     number of sides     number of boxes) Total volume  (height    width    length     number of boxes) Surface-to-volume  ratio  (surface area    volume) 6 1 6 150 125 12 750 125 6
[object Object],[object Object],[object Object],Carbohydrate side chain Figure 6.8 A, B Outside of cell Inside of cell Hydrophilic region Hydrophobic region Hydrophilic region (b) Structure of the plasma membrane  Phospholipid Proteins TEM of a plasma membrane.  The plasma membrane, here in a red blood cell, appears as a pair of dark bands separated by a light band. (a) 0.1 µm
[object Object],Figure 6.9 Rough ER Smooth ER Centrosome CYTOSKELETON Microfilaments Microtubules Microvilli Peroxisome Lysosome Golgi apparatus Ribosomes In animal cells but not plant cells: Lysosomes Centrioles Flagella (in some plant sperm) Nucleolus Chromatin NUCLEUS Flagelium Intermediate filaments ENDOPLASMIC RETICULUM (ER) Mitochondrion Nuclear envelope Plasma membrane
[object Object],In plant cells but not animal cells: Chloroplasts Central vacuole and tonoplast Cell wall Plasmodesmata CYTOSKELETON Figure 6.9 Ribosomes (small brwon dots) Central vacuole Microfilaments Intermediate  filaments Microtubules Rough  endoplasmic  reticulum Smooth  endoplasmic  reticulum Chromatin NUCLEUS Nuclear envelope Nucleolus Chloroplast Plasmodesmata Wall of adjacent cell Cell wall Golgi apparatus Peroxisome Tonoplast Centrosome Plasma membrane Mitochondrion
[object Object]
[object Object],[object Object],Figure 6.10 Nucleus Nucleus Nucleolus Chromatin Nuclear envelope: Inner membrane Outer membrane Nuclear pore Rough ER Pore complex Surface of nuclear  envelope. Pore complexes (TEM).  Nuclear lamina (TEM).   Close-up of  nuclear envelope Ribosome 1 µm 1 µm 0.25 µm
Ribosomes: Protein Factories in the Cell ,[object Object],[object Object]
[object Object],ER Endoplasmic reticulum (ER) Figure 6.11 Ribosomes Cytosol Free ribosomes Bound ribosomes Large subunit Small subunit TEM showing ER and ribosomes Diagram of a ribosome 0.5 µm
The Endoplasmic Reticulum: Biosynthetic Factory ,[object Object],[object Object],[object Object],Smooth ER Rough ER ER lumen Cisternae Ribosomes Transport vesicle Smooth ER Transitional ER Rough ER 200 µm Nuclear envelope
[object Object],[object Object],[object Object]
Functions of Smooth ER ,[object Object],[object Object],[object Object],[object Object],[object Object]
Functions of Rough ER ,[object Object],[object Object],[object Object]
[object Object],[object Object],[object Object],The Golgi Apparatus: Shipping and  Receiving Center ,[object Object],[object Object],[object Object]
[object Object],Golgi apparatus TEM of Golgi apparatus Figure 6.13 cis  face (“receiving” side of Golgi apparatus) Vesicles move from ER to Golgi Vesicles also  transport certain proteins back to ER Vesicles coalesce to form new  cis  Golgi cisternae Cisternal maturation: Golgi cisternae move in a  cis - to- trans direction Vesicles form and leave Golgi, carrying specific proteins to other locations or to the plasma mem- brane for secretion Vesicles transport specific proteins backward to newer Golgi cisternae Cisternae trans  face (“shipping” side of Golgi apparatus) 0.1 0 µm 1 6 5 2 3 4
Lysosomes: Digestive Compartments ,[object Object],[object Object],[object Object]
[object Object],[object Object],Figure 6.14 A (a) Phagocytosis: lysosome digesting food 1 µm Lysosome contains active hydrolytic enzymes Food vacuole  fuses with  lysosome Hydrolytic enzymes digest food particles Digestion Food vacuole Plasma membrane Lysosome Digestive enzymes Lysosome Nucleus
[object Object],[object Object],[object Object],[object Object]
[object Object],[object Object],[object Object],Figure 6.15 Central vacuole Cytosol Tonoplast Central vacuole Nucleus Cell wall Chloroplast 5 µm
[object Object],Figure 6.16 Plasma membrane expands by fusion of vesicles; proteins are secreted from cell Transport vesicle carries proteins to plasma  membrane for secretion Lysosome available for fusion with another vesicle for digestion 4 5 6 Nuclear envelope is connected  to rough ER,  which is also continuous with smooth ER Nucleus Rough ER Smooth ER cis  Golgi trans Golgi Membranes and proteins produced by the ER flow in the form of transport vesicles to the Golgi Nuclear envelop Golgi pinches off transport  Vesicles and other vesicles  that give rise to lysosomes and  Vacuoles  1 3 2 Plasma membrane
[object Object],[object Object],[object Object],[object Object],[object Object]
Mitochondria: Chemical Energy Conversion ,[object Object],[object Object]
[object Object],[object Object],[object Object],Figure 6.17 Mitochondrion Intermembrane space Outer membrane Free ribosomes in the  mitochondrial matrix Mitochondrial DNA Inner membrane Cristae Matrix 100 µm
Chloroplasts: Capture of Light Energy ,[object Object],[object Object],[object Object]
[object Object],[object Object],Figure 6.18 Chloroplast Chloroplast DNA Ribosomes Stroma Inner and outer membranes Thylakoid 1 µm Granum
[object Object],[object Object],[object Object]
Peroxisomes: Oxidation ,[object Object],[object Object],Figure 6.19 Chloroplast Peroxisome Mitochondrion 1 µm
[object Object],[object Object],Figure 6.20 Microtubule 0.25 µm Microfilaments Figure 6.20
[object Object],Vesicle ATP Receptor for motor protein Motor protein (ATP powered) Microtubule of cytoskeleton (a)   Motor proteins that attach to receptors on organelles can “walk” the organelles along microtubules or, in some cases, microfilaments. Microtubule Vesicles 0.25 µm (b)   Vesicles containing neurotransmitters migrate to the tips of nerve cell  axons via the mechanism in (a). In this SEM of a squid giant axon, two     vesicles can be seen moving along a microtubule. (A separate part of the    experiment provided the evidence that they were in fact moving.) Figure 6.21 A, B
[object Object],Table 6.1
Microtubules ,[object Object],[object Object],[object Object],[object Object]
Centrosomes and Centrioles ,[object Object],[object Object]
[object Object],Centrosome Microtubule Centrioles 0.25 µm Longitudinal section of one centriole Microtubules Cross section of the other centriole Figure 6.22
Cilia and Flagella ,[object Object],[object Object],[object Object],(a) Motion of flagella.  A flagellum usually undulates, its snakelike motion driving a cell in the same direction as the axis of the flagellum. Propulsion of a human sperm cell is an example of  flagellatelocomotion (LM).  1 µm Direction of swimming (b) Motion of cilia.  Cilia have a back- and-forth motion that moves the  cell in a direction perpendicular  to the axis of the cilium. A dense  nap of cilia, beating at a rate of  about 40 to 60 strokes a second,  covers this  Colpidium,  a freshwater  protozoan (SEM). Figure 6.23 B
[object Object],[object Object],Microtubule doublets ATP Dynein arm Powered by ATP, the dynein arms of one microtubule doublet  grip the adjacent doublet, push it up, release, and then grip again.  If the two microtubule doublets were not attached, they would slide  relative to each other. (a) Figure 6.25 A
Microfilaments (Actin Filaments) ,[object Object],[object Object]
[object Object],0.25 µm Microvillus Plasma membrane Microfilaments (actin filaments) Intermediate filaments Figure 6.26
[object Object],[object Object],Actin filament Myosin filament Myosin motors in muscle cell contraction.  (a) Muscle cell Myosin arm Figure 6.27 A
[object Object],[object Object],Figure 6.27 B Cortex (outer cytoplasm): gel with actin network Inner cytoplasm: sol  with actin subunits Extending pseudopodium (b) Amoeboid movement
Intermediate Filaments ,[object Object],[object Object],[object Object]
Cell Walls of Plants ,[object Object],[object Object]
[object Object],[object Object],[object Object],Central  vacuole of cell  Plasma membrane Secondary cell wall Primary cell wall Middle lamella 1 µm Central vacuole of cell  Central vacuole  Cytosol Plasma membrane Plant cell walls Plasmodesmata Figure 6.28
Plants: Plasmodesmata ,[object Object],[object Object],Interior of cell Interior of cell 0.5 µm Plasmodesmata Plasma membranes Cell walls Figure 6.30
The Extracellular Matrix (ECM) of Animal Cells ,[object Object],[object Object],[object Object]
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Collagen Fibronectin Plasma membrane EXTRACELLULAR FLUID Micro- filaments CYTOPLASM Integrins Polysaccharide molecule Carbo- hydrates Proteoglycan molecule Core protein Integrin Figure 6.29 A proteoglycan  complex
Animals: Tight Junctions, Desmosomes, and Gap Junctions ,[object Object],[object Object],[object Object],[object Object]
[object Object],Tight junctions prevent  fluid from moving  across a layer of cells Tight junction 0.5 µm 1 µm Space between cells Plasma membranes of adjacent cells Extracellular matrix Gap junction Tight junctions 0.1 µm Intermediate filaments Desmosome Gap junctions At  tight junctions , the membranes of neighboring cells are very tightly pressed against each other, bound together by specific proteins (purple). Forming continu- ous seals around the cells, tight junctions prevent leakage of extracellular fluid across A layer of epithelial cells. Desmosomes  (also called  anchoring junctions ) function like rivets, fastening cells Together into strong sheets. Intermediate Filaments made of sturdy keratin proteins Anchor desmosomes in the cytoplasm. Gap junctions  (also  called communicating junctions ) provide cytoplasmic channels from one cell to an adjacent cell. Gap junctions  consist of special membrane proteins that  surround a pore through which ions, sugars, amino acids, and other small molecules may pass. Gap junctions are necessary for commu- nication between cells in many types of tissues, including heart muscle and animal embryos. TIGHT JUNCTIONS DESMOSOMES GAP JUNCTIONS Figure 6.31
The Cell: A Living Unit Greater Than the Sum of Its Parts ,[object Object],5 µm Figure 6.32
Irreducible Complexity  or WPP  of organ systems and body tissues Irreducible complexity  (Popularized by Michael Behe) is the argument that certain biological systems are absolutely too complex to have evolved naturally from simpler, or "less complete" predecessors.   An “irreducibly complex system" is defined as  "one that could not function if it were any simpler",  and therefore, could not possibly have been formed by successive additions to a precursor system with the same functionality. WPP – Whole Package Phenomenon

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The Cell: A Tour of Structure and Function

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  • 5. Differential-interference-contrast (Nomarski). Like phase-contrast microscopy, it uses optical modifications to exaggerate differences in density, making the image appear almost 3D. Fluorescence. Shows the locations of specific molecules in the cell by tagging the molecules with fluorescent dyes or antibodies. These fluorescent substances absorb ultraviolet radiation and emit visible light, as shown here in a cell from an artery. Confocal. Uses lasers and special optics for “ optical sectioning” of fluorescently-stained specimens. Only a single plane of focus is illuminated; out-of-focus fluorescence above and below the plane is subtracted by a computer. A sharp image results, as seen in stained nervous tissue (top), where nerve cells are green, support cells are red, and regions of overlap are yellow. A standard fluorescence micrograph (bottom) of this relatively thick tissue is blurry. 50 µm 50 µm (d) (e) (f)
  • 6.
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  • 12. Figure 6.6 A, B (b) A thin section through the bacterium Bacillus coagulans (TEM) Pili: attachment structures on the surface of some prokaryotes Nucleoid: region where the cell’s DNA is located (not enclosed by a membrane) Ribosomes: organelles that synthesize proteins Plasma membrane: membrane enclosing the cytoplasm Cell wall: rigid structure outside the plasma membrane Capsule: jelly-like outer coating of many prokaryotes Flagella: locomotion organelles of some bacteria (a) A typical rod-shaped bacterium 0.5 µm Bacterial chromosome
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  • 60.
  • 61. Irreducible Complexity or WPP of organ systems and body tissues Irreducible complexity (Popularized by Michael Behe) is the argument that certain biological systems are absolutely too complex to have evolved naturally from simpler, or "less complete" predecessors. An “irreducibly complex system" is defined as "one that could not function if it were any simpler", and therefore, could not possibly have been formed by successive additions to a precursor system with the same functionality. WPP – Whole Package Phenomenon