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S Berezenko
Steve.Berezenko@deltabiotechnology.com
Designing an Effective
Formulation for the
Manufacture of Recombinant
Albumin
Technology Transfer
for
Biopharmaceuticals
Amsterdam April 2006
Typical Excipients for Biopharmaceuticals
Trehalose Histidine
Mannose Aspartic acid
Sucrose Alanine
Sugars
Dextrose
Amino Acids
Glutamic acid
Sorbitol Polysorbate
Mannitol Albumin
Polyols
Glycerol
Polymers
Gelatin
Trials and Tribulations
Formulation The Clinic
Recombinant albumin – the background
Recombinant Human Albumin
Structure of rHA with five molecules of
myristate bound.
Curry et al. (1998) Nature Structural
Biology 5, 827-835
• Large secreted
protein
– 67kDa
– 585 amino
acids
• Highly folded
– 35 cysteines
– 17 disulphide
bonds
– 1 free cysteine
Yeast – Positive Attributes
• GRAS status
– S. cerevisiae
– K. lactis
• Wide range of strains
• Extensive industrial history
– 16 S. cerevisiae
therapeutic products
marketed
– 7 P. pastoris therapeutic
products under
development
Gerngross, T. (2004) Nature
Biotechnology 22, 1409-1414
8m3
working volume fermentation vessel
The Delta Expression Platform
• Expression vector development
– Native 2µm-based plasmid
– LEU2 selective marker
– Expression cassette
• Yeast strain development
– Highly developed family of
Saccharomyces cerevisiae strains
– Random and specific mutagenesis
High Cell Density Fermentation System
• Constitutive expression
1 2 3 4 5 6
1ug
1ug
Lane
Feed Time
(hr)
Feed Vol
(L)
Biomass
(g CDW/L)
1 6.5 0.1 8.9
2 14.0 0.3 14.9
3 30.5 1.1 46.8
4 38.3 1.9 67.5
5 54.5 4.8 101.8
6 55.5 5.0 101.3
Analysis of HCD culture supernatant
12% Bis-Tris SDS Novex gel
MES Buffered
Purification of rHA
• Extracellular product
• Multi-stage chromatography process
• Simple step elution processes
• All operations at room temperature
Recombumin® Purification
R&D Storage and Stability studies
R&D Final Container Stability Trials
• Monitored
– Purity
– Degradation
– Dimer/oligomer
– Free thiol
– Thermal stability
– Particle formation
Proteolysis and N-terminal Clipping
-separate issues
R&D Final Container Stability Trials
• Upon storage in the final container
an extra protein species was found
to be present
– time and temperature dependent
formation
– unaffected by pasteurisation or
protease inhibitors
Proteolysis and N-terminal Clipping
-separate issues
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Proteolysis in Culture Supernatant and
YAP3 Gene Deletion
1 2
rHA
monomer
45kDa
fragment
rHA produced in fed-batch
fermentations:
Lane 1: rHA produced
by YAP3 strain
15% fragment
Lane 2: rHA produced
by yap3 strain
1-5% fragment
Proteolysis and YAP3 Gene Deletion
• YAP3 deletion resulted in
– Increased rHA productivity in the
fermenter, more full length albumin
– Increased downstream recovery
• Less fragment improved recovery from a
step used to remove fragment by re-
optimising elution conditions
Electrospray Mass Spectrometry
Recombumin®
HSA
Unmodified
monomer
Monomer + blocked
free thiol (cys34 + cys)
Monomer lacking
N-terminal Asp-Ala
Monomer lacking
C-terminal Leu
65500 66000 66500 67000 67500
DesAsp-Ala + blocked
free thiol
Recombumin®
HSA
Unmodified
monomer
Monomer + blocked
free thiol (cys34 + cys)
Monomer lacking
N-terminal Asp-Ala
Monomer lacking
C-terminal Leu
65500 66000 66500 67000 67500
DesAsp-Ala + blocked
free thiol
____
____
N-terminal Degradation of Albumin
• Loss of first two residues - Asp, Ala
– Temperature dependent
– Dependent on N-terminal α-amino group
– Metal independent
– Sequence (species) dependent
• Mechanism proposed
– Chan et al. (1995) Eur. J. Biochem. 227,
524-528
N-terminal Degradation of Albumin
• Proton withdrawal from α-amino group by
the Asp1 COOH
• Nucleophilic attack by α-amino nitrogen on
Ala2-His3 peptide carbonyl results in
cleavage of peptide bond and release of
cyclic peptide
N-terminal Degradation of Albumin
N-terminal Degradation of Albumin
• Take home message
– N-terminal Degradation of Albumin is a
natural phenomenon exhibited by HSA
and recombinant albumin
– It cant be solved by optimisation of
formulation conditions
– Rate of formation can be reduced by
storage at 2-8oC
Dimerisation and Oligomerisation
GP-HPLC
ABSORBANCE(280nm)
0 2 4 6 8 0 12
TIME (minutes)
POLYMER
TRIMER
DIMER
MONOMER
RECOMBUMIN®
HSA
Polymer in HSA
• Polymer is formed in HSA by heat
treatment at 60oC for 10 hour –
pasteurisation
– Composed of heat denatured protein
contaminants as HSA need only be
>96% pure (USP)
Dimer Trimer and Cys34 Environment
Stewart et al Febs J (2005) 272 353-362
Dimer and Oligomer Formation
• Directed through Cys34
– Three types of dimer
• Non covalent, dissociated by SDS
• Covalent
– Reducible by mercaptoethanol
– Non reducible by mercaptoethanol
– Trimer and higher oligomers
• Formed through thiol disulphide interchange
• Oligomer formation is a natural phenomenon
and is time, temperature and concentration
dependent
Other Free Thiol Interactions
• Storage changes in free thiol
– Oxidation in the vial
• Oxygen in the headspace of the vial is finite
• Vial geometry and fill volume affect the
extent of oxidation
Free Thiol Stability Testing
Free Thiol Stability Data
0.15
0.25
0.35
0.45
0.55
0.65
0.75
0.85
0.95
0 5 10 15 20 25 30 35 40
Months
FreeShmol/mol
2-8oC
25+2oC
Development of a Heat stable
Formulation and Prevention of Particle
Formation
Recombumin® Formulation
• 20% (w/v) rHA
• 130 - 160mM Sodium
• 32mM Octanoate
• 15mg.L-1 Polysorbate 80
• Water for Injection
Protein Particle Formation
• Liquid formulation of proteins
– Denaturation at air liquid interface
• Agitation*
– Vessel agitation, on multiple cycle chromatography,
only agitate once at the end of the process step
• Foaming*
– Ensure dip pipes in vessels and return pipes in UF rigs
are configured properly
• Stress at the hydrophobic/hydrophilic interface in the
vial
– Not easily solved
*Especially with process scale equipment
Protein Particle Formation
• Particle formation in the final container
can be prevented by the addition of
non ionic surfactants, e.g. Polysorbate
80, Pluronate etc.
• Polysorbate 80 more effective at lower
concentrations
– Available animal free
Octanoate as a Stabiliser and Potential
Batch Tests – for therapeutic HSA
• 57oC / 50h, one bottle from a batch of
HSA
– Stability and purity
• 60oC / 10h, whole batch
– Pasteurisation, viral inactivation
• 30oC 2 weeks
– Sterility
Heat Treatment of rHA Formulations
25% (w/v) rHA
Heated at 57ºC for 50hr
1. 40mM octanoate +15g.L-1
polysorbate 80
2. 40mM octanoate
3. 20mM octanoate +
15g.L-1 polysorbate 80
4. 20mM octanoate
1 2 3 4
Formulation Stabilisation with Octanaote
HSA
(mg.mL-1
) (mM) (mmole.g-1
protein)
Armour Pharma 200 16 0.08
45 7.2 0.16
200 32 0.16
Novo Nordisk 50 20 0.4
Protein
Fractionation
Centre
200 36 0.18
Manufacturer Octanoic acid
Blood Products
Laboratory
DSC for Formulation Development
Octanoate
concentration
and Tmelt
Choice of Formulation Excipients
• USP
– 0.08mmol.g-1 protein N-acetyltryptophan
required for HSA therapeutic plus
equimolar octanaote
• DSC did not show any enhancement of
stability, therefore excluded
• Up to 0.4mmol.g-1 protein used in
octanaote only formulation
– DSC identified maximal heat stability at
0.16mmol.g-1 protein
Recombumin® Formulation
• 20% (w/v) rHA
• 130 - 160mM Sodium
• 32mM Octanoate
• 15mg.L-1 Polysorbate 80
• Water for Injection
Regulatory Approval
• Formulation Issues
– NTD, free thiol oxidation and dimer
formation are accepted as natural
phenomena, occurs in HSA and rHA
– Particle formation is prevented by
Polysorbate 80
– Heat stability optimised by use of DSC to
choose octanoate concentration
Regulatory Approval
• Currently Recombumin® is used in
– medical device coatings
– IVF reagents
– FDA approved manufacture of MMRII
vaccine
– EMEA approved MMRII vaccine
S Berezenko PhD
Steve.Berezenko@deltabiotechnology.com

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Technology transfer for biopharmaceuticals amsterdam 2006

  • 2. Designing an Effective Formulation for the Manufacture of Recombinant Albumin Technology Transfer for Biopharmaceuticals Amsterdam April 2006
  • 3. Typical Excipients for Biopharmaceuticals Trehalose Histidine Mannose Aspartic acid Sucrose Alanine Sugars Dextrose Amino Acids Glutamic acid Sorbitol Polysorbate Mannitol Albumin Polyols Glycerol Polymers Gelatin
  • 5. Recombinant albumin – the background
  • 6. Recombinant Human Albumin Structure of rHA with five molecules of myristate bound. Curry et al. (1998) Nature Structural Biology 5, 827-835 • Large secreted protein – 67kDa – 585 amino acids • Highly folded – 35 cysteines – 17 disulphide bonds – 1 free cysteine
  • 7. Yeast – Positive Attributes • GRAS status – S. cerevisiae – K. lactis • Wide range of strains • Extensive industrial history – 16 S. cerevisiae therapeutic products marketed – 7 P. pastoris therapeutic products under development Gerngross, T. (2004) Nature Biotechnology 22, 1409-1414 8m3 working volume fermentation vessel
  • 8. The Delta Expression Platform • Expression vector development – Native 2µm-based plasmid – LEU2 selective marker – Expression cassette • Yeast strain development – Highly developed family of Saccharomyces cerevisiae strains – Random and specific mutagenesis
  • 9. High Cell Density Fermentation System • Constitutive expression 1 2 3 4 5 6 1ug 1ug Lane Feed Time (hr) Feed Vol (L) Biomass (g CDW/L) 1 6.5 0.1 8.9 2 14.0 0.3 14.9 3 30.5 1.1 46.8 4 38.3 1.9 67.5 5 54.5 4.8 101.8 6 55.5 5.0 101.3 Analysis of HCD culture supernatant 12% Bis-Tris SDS Novex gel MES Buffered
  • 10. Purification of rHA • Extracellular product • Multi-stage chromatography process • Simple step elution processes • All operations at room temperature
  • 12. R&D Storage and Stability studies
  • 13. R&D Final Container Stability Trials • Monitored – Purity – Degradation – Dimer/oligomer – Free thiol – Thermal stability – Particle formation
  • 14. Proteolysis and N-terminal Clipping -separate issues
  • 15. R&D Final Container Stability Trials • Upon storage in the final container an extra protein species was found to be present – time and temperature dependent formation – unaffected by pasteurisation or protease inhibitors
  • 16. Proteolysis and N-terminal Clipping -separate issues Y Q A F A I L V L A K F N E E G L D K F R H AS K H A D E V V C T K A F E T V E N V L K V H D E F P C Q Q L A D E N C D K E S S L H T L F G D K L C T V A T L E R Y T G E M A D C C A K Q A E R N E C F E P L Q H K D D N P N L P R L V R P E V D V M C T A F H D N E E T F L K K Y L Y E I A R H P F Y A P E L L F F A K R Y K A A F T E C C Q A A D K A A C L L P K A Q H D F A L K N L D E L R E D G K A S S K Q R L K C A S L K F G E R A F K A W A V A R L S Q K A E F A E V S K L V T D L T K V T E C C H G D L L E C A D R A D L A K Y I C E N Q D S I R P F R Y S S K L K E C C E K P E K L L S H C I A E V N E D E M A P D L P S L A A D V E S K D V C K N Y E A K D V F L G M F L Y E Y A R R H P D Y S V V L L L R L A K T Y E T T E K C C A A A D P H E C Y A V F D E F K L V P E E P Q L Domain 1 Domain 2 Domain 3 E E G D F V E G L I K Q C E N L F Q L G E Y K F Q N A L L V R Y T K PK Q V V S T P T L V E V S R N L G K V S K C C K H P E A K R M P C A E Y L S V V L N Q L C V L H E K T P S D V R V T K C C T E S L V N R R P C F S A L E V D E T Y V P K E F N A E T F T H A D I C T L S E K E R Q I K K Q T A L V L V K H K P K A T K E Q L K A V M D D F A A F E K C C K A D D K E T C F A E G K K L AV S Q A A L A
  • 17. Proteolysis in Culture Supernatant and YAP3 Gene Deletion 1 2 rHA monomer 45kDa fragment rHA produced in fed-batch fermentations: Lane 1: rHA produced by YAP3 strain 15% fragment Lane 2: rHA produced by yap3 strain 1-5% fragment
  • 18. Proteolysis and YAP3 Gene Deletion • YAP3 deletion resulted in – Increased rHA productivity in the fermenter, more full length albumin – Increased downstream recovery • Less fragment improved recovery from a step used to remove fragment by re- optimising elution conditions
  • 19. Electrospray Mass Spectrometry Recombumin® HSA Unmodified monomer Monomer + blocked free thiol (cys34 + cys) Monomer lacking N-terminal Asp-Ala Monomer lacking C-terminal Leu 65500 66000 66500 67000 67500 DesAsp-Ala + blocked free thiol Recombumin® HSA Unmodified monomer Monomer + blocked free thiol (cys34 + cys) Monomer lacking N-terminal Asp-Ala Monomer lacking C-terminal Leu 65500 66000 66500 67000 67500 DesAsp-Ala + blocked free thiol ____ ____
  • 20. N-terminal Degradation of Albumin • Loss of first two residues - Asp, Ala – Temperature dependent – Dependent on N-terminal α-amino group – Metal independent – Sequence (species) dependent • Mechanism proposed – Chan et al. (1995) Eur. J. Biochem. 227, 524-528
  • 21. N-terminal Degradation of Albumin • Proton withdrawal from α-amino group by the Asp1 COOH • Nucleophilic attack by α-amino nitrogen on Ala2-His3 peptide carbonyl results in cleavage of peptide bond and release of cyclic peptide
  • 23. N-terminal Degradation of Albumin • Take home message – N-terminal Degradation of Albumin is a natural phenomenon exhibited by HSA and recombinant albumin – It cant be solved by optimisation of formulation conditions – Rate of formation can be reduced by storage at 2-8oC
  • 25. GP-HPLC ABSORBANCE(280nm) 0 2 4 6 8 0 12 TIME (minutes) POLYMER TRIMER DIMER MONOMER RECOMBUMIN® HSA
  • 26. Polymer in HSA • Polymer is formed in HSA by heat treatment at 60oC for 10 hour – pasteurisation – Composed of heat denatured protein contaminants as HSA need only be >96% pure (USP)
  • 27. Dimer Trimer and Cys34 Environment Stewart et al Febs J (2005) 272 353-362
  • 28. Dimer and Oligomer Formation • Directed through Cys34 – Three types of dimer • Non covalent, dissociated by SDS • Covalent – Reducible by mercaptoethanol – Non reducible by mercaptoethanol – Trimer and higher oligomers • Formed through thiol disulphide interchange • Oligomer formation is a natural phenomenon and is time, temperature and concentration dependent
  • 29. Other Free Thiol Interactions • Storage changes in free thiol – Oxidation in the vial • Oxygen in the headspace of the vial is finite • Vial geometry and fill volume affect the extent of oxidation
  • 30. Free Thiol Stability Testing Free Thiol Stability Data 0.15 0.25 0.35 0.45 0.55 0.65 0.75 0.85 0.95 0 5 10 15 20 25 30 35 40 Months FreeShmol/mol 2-8oC 25+2oC
  • 31. Development of a Heat stable Formulation and Prevention of Particle Formation
  • 32. Recombumin® Formulation • 20% (w/v) rHA • 130 - 160mM Sodium • 32mM Octanoate • 15mg.L-1 Polysorbate 80 • Water for Injection
  • 33. Protein Particle Formation • Liquid formulation of proteins – Denaturation at air liquid interface • Agitation* – Vessel agitation, on multiple cycle chromatography, only agitate once at the end of the process step • Foaming* – Ensure dip pipes in vessels and return pipes in UF rigs are configured properly • Stress at the hydrophobic/hydrophilic interface in the vial – Not easily solved *Especially with process scale equipment
  • 34. Protein Particle Formation • Particle formation in the final container can be prevented by the addition of non ionic surfactants, e.g. Polysorbate 80, Pluronate etc. • Polysorbate 80 more effective at lower concentrations – Available animal free
  • 35. Octanoate as a Stabiliser and Potential Batch Tests – for therapeutic HSA • 57oC / 50h, one bottle from a batch of HSA – Stability and purity • 60oC / 10h, whole batch – Pasteurisation, viral inactivation • 30oC 2 weeks – Sterility
  • 36. Heat Treatment of rHA Formulations 25% (w/v) rHA Heated at 57ºC for 50hr 1. 40mM octanoate +15g.L-1 polysorbate 80 2. 40mM octanoate 3. 20mM octanoate + 15g.L-1 polysorbate 80 4. 20mM octanoate 1 2 3 4
  • 37. Formulation Stabilisation with Octanaote HSA (mg.mL-1 ) (mM) (mmole.g-1 protein) Armour Pharma 200 16 0.08 45 7.2 0.16 200 32 0.16 Novo Nordisk 50 20 0.4 Protein Fractionation Centre 200 36 0.18 Manufacturer Octanoic acid Blood Products Laboratory
  • 38. DSC for Formulation Development Octanoate concentration and Tmelt
  • 39. Choice of Formulation Excipients • USP – 0.08mmol.g-1 protein N-acetyltryptophan required for HSA therapeutic plus equimolar octanaote • DSC did not show any enhancement of stability, therefore excluded • Up to 0.4mmol.g-1 protein used in octanaote only formulation – DSC identified maximal heat stability at 0.16mmol.g-1 protein
  • 40. Recombumin® Formulation • 20% (w/v) rHA • 130 - 160mM Sodium • 32mM Octanoate • 15mg.L-1 Polysorbate 80 • Water for Injection
  • 41. Regulatory Approval • Formulation Issues – NTD, free thiol oxidation and dimer formation are accepted as natural phenomena, occurs in HSA and rHA – Particle formation is prevented by Polysorbate 80 – Heat stability optimised by use of DSC to choose octanoate concentration
  • 42. Regulatory Approval • Currently Recombumin® is used in – medical device coatings – IVF reagents – FDA approved manufacture of MMRII vaccine – EMEA approved MMRII vaccine