The document discusses four major cell organelles: the endoplasmic reticulum, Golgi apparatus, mitochondria, and chloroplasts. It describes the structure and functions of each organelle. The endoplasmic reticulum is a network of membranes that synthesizes proteins and lipids. The Golgi apparatus packages and modifies proteins and lipids. Mitochondria generate energy through ATP production. Chloroplasts conduct photosynthesis. The endosymbiotic theory proposes that mitochondria and chloroplasts originated from ancient prokaryotes living symbiotically inside cells.
SWISS-PROT- Protein Database- The Universal Protein Resource Knowledgebase (UniProtKB) is the central hub for the collection of functional information on proteins.
Gene prediction is the process of determining where a coding gene might be in a genomic sequence. Functional proteins must begin with a Start codon (where DNA transcription begins), and end with a Stop codon (where transcription ends).
An integrated publicly accessible bioinformatics resource to support genomic/proteomic research and scientific discovery.
Established in 1984, by the National Biomedical Research Foundation (NBRF) Georgetown University Medial Center, Washington D.C., USA.
It is the source of annotated protein databases and analysis tools for the researchers.
Serve as primary resource for the exploration of protein information.
Accessible by text search for entry and list retrieval, and also BLAST search and peptide match.
SWISS-PROT- Protein Database- The Universal Protein Resource Knowledgebase (UniProtKB) is the central hub for the collection of functional information on proteins.
Gene prediction is the process of determining where a coding gene might be in a genomic sequence. Functional proteins must begin with a Start codon (where DNA transcription begins), and end with a Stop codon (where transcription ends).
An integrated publicly accessible bioinformatics resource to support genomic/proteomic research and scientific discovery.
Established in 1984, by the National Biomedical Research Foundation (NBRF) Georgetown University Medial Center, Washington D.C., USA.
It is the source of annotated protein databases and analysis tools for the researchers.
Serve as primary resource for the exploration of protein information.
Accessible by text search for entry and list retrieval, and also BLAST search and peptide match.
PAM and BLOSUM are the widely used substitution matrices in the sequence alignment. The mathematical modeling of PAM matrices is explained in these slides.
Genomics, Transcriptomics, Proteomics, Metabolomics - Basic concepts for clin...Prasenjit Mitra
This set of slides gives an overview regarding the various omics technologies available and how they can be used for improvement in clinical setting or research
It is a comprehensive, authoritative and timely knowledgebase of human genes and genetic disorders compiled to support human genetics research and education and the practice of clinical genetics.
One of the best websites for detailed and updated information of genetic diseases.
Set up in 1995 by the National Centre for Biotechnology Information (NCBI).
Applications of bioinformatics, main by kk sahuKAUSHAL SAHU
Introduction
Goals of Bioinformatics
Bioinformatics & Human Genome
Project
What can we do using bioinformatics ?
Applications of bioinformatics in various fields
1) Medicine
2) Evolutionary studies
3) Agriculture
4) Microbiology
5) Biotechnology
Conclusion
References
A biological database providing free online retrieval of all the literature related to genetic diseases and their relationships with the phenotypes which are submitted by the medical and biological researchers that are updated regularly
Cell Structures and Functions In pathology.pptxVictory120660
Cell structure and function are fundamental to understanding biology. Here's a broad overview:
1. **Cell Structure:**
- **Cell Membrane:** Acts as a barrier, controlling the passage of substances in and out of the cell.
- **Cytoplasm:** Gel-like substance within the cell where organelles are suspended.
- **Nucleus:** Contains genetic material (DNA) and controls cell activities.
- **Organelles:** Structures within the cell with specific functions, such as mitochondria (energy production), endoplasmic reticulum (protein synthesis), Golgi apparatus (protein packaging), and lysosomes (digestion).
2. **Cell Function:**
- **Metabolism:** Cells carry out metabolic processes to maintain life, including energy production, nutrient breakdown, and waste removal.
- **Reproduction:** Cells can reproduce through processes like mitosis (cell division) or meiosis (reproductive cell division).
- **Homeostasis:** Cells maintain a stable internal environment by regulating processes like temperature, pH, and nutrient levels.
- **Communication:** Cells communicate with each other through chemical signals, allowing coordination within tissues and organ systems.
- **Differentiation:** Cells specialize into different types with specific functions during development, forming tissues and organs.
- **Response to Stimuli:** Cells can respond to external stimuli, such as light or chemicals, through processes like movement or changes in gene expression.
Understanding cell structure and function is crucial for comprehending biological processes at all levels, from the functioning of individual organisms to the interactions within ecosystems.
PAM and BLOSUM are the widely used substitution matrices in the sequence alignment. The mathematical modeling of PAM matrices is explained in these slides.
Genomics, Transcriptomics, Proteomics, Metabolomics - Basic concepts for clin...Prasenjit Mitra
This set of slides gives an overview regarding the various omics technologies available and how they can be used for improvement in clinical setting or research
It is a comprehensive, authoritative and timely knowledgebase of human genes and genetic disorders compiled to support human genetics research and education and the practice of clinical genetics.
One of the best websites for detailed and updated information of genetic diseases.
Set up in 1995 by the National Centre for Biotechnology Information (NCBI).
Applications of bioinformatics, main by kk sahuKAUSHAL SAHU
Introduction
Goals of Bioinformatics
Bioinformatics & Human Genome
Project
What can we do using bioinformatics ?
Applications of bioinformatics in various fields
1) Medicine
2) Evolutionary studies
3) Agriculture
4) Microbiology
5) Biotechnology
Conclusion
References
A biological database providing free online retrieval of all the literature related to genetic diseases and their relationships with the phenotypes which are submitted by the medical and biological researchers that are updated regularly
Cell Structures and Functions In pathology.pptxVictory120660
Cell structure and function are fundamental to understanding biology. Here's a broad overview:
1. **Cell Structure:**
- **Cell Membrane:** Acts as a barrier, controlling the passage of substances in and out of the cell.
- **Cytoplasm:** Gel-like substance within the cell where organelles are suspended.
- **Nucleus:** Contains genetic material (DNA) and controls cell activities.
- **Organelles:** Structures within the cell with specific functions, such as mitochondria (energy production), endoplasmic reticulum (protein synthesis), Golgi apparatus (protein packaging), and lysosomes (digestion).
2. **Cell Function:**
- **Metabolism:** Cells carry out metabolic processes to maintain life, including energy production, nutrient breakdown, and waste removal.
- **Reproduction:** Cells can reproduce through processes like mitosis (cell division) or meiosis (reproductive cell division).
- **Homeostasis:** Cells maintain a stable internal environment by regulating processes like temperature, pH, and nutrient levels.
- **Communication:** Cells communicate with each other through chemical signals, allowing coordination within tissues and organ systems.
- **Differentiation:** Cells specialize into different types with specific functions during development, forming tissues and organs.
- **Response to Stimuli:** Cells can respond to external stimuli, such as light or chemicals, through processes like movement or changes in gene expression.
Understanding cell structure and function is crucial for comprehending biological processes at all levels, from the functioning of individual organisms to the interactions within ecosystems.
cell organelles, nucleus, mitochondria, plasma memebrane,ribosomes, golgi bodies, lysosomes, chloroplast
(helpfull for B.Sc. students as well as competitions tests
Animal cells are typical of the eukaryotic cell, enclosed by a plasma membrane and containing a membrane-bound nucleus and organelles. Unlike the eukaryotic cells of plants and fungi, animal cells do not have a cell wall. This feature was lost in the distant past by the single-celled organisms that gave rise to the kingdom Animalia. Most cells, both animal and plant, range in size between 1 and 100 micrometers and are thus visible only with the aid of a microscope.
All living organisms are made of cells and cellular products. The cell is the smallest structural, functional, and biological unit of all living organisms. It can capable of biosynthesis, replication and energy transformation. All cellular organelles carry out specific functions that are necessary for the normal functioning of the cell. Animal cells work together and function interdependently. Human cells vary in size, shape, and function. Most animal cells are so small they can only be seen with the aid of a microscope. Based on function, there are more than 200 different kinds of animal cells that help each system contribute to the homeostasis of the entire body. Despite their many differences, human cells have several similar structural features: a cell membrane, a nucleus, and cytoplasm and cell organelles.
AS Biology, Unit 1 (Module 1) notes (OCR)Paige Cavey
This presentation features key notes and diagrams from the unit 1, module 1 of AS biology. These notes have been mad heavily using OCR text books, however other sources have been used.
Salas, V. (2024) "John of St. Thomas (Poinsot) on the Science of Sacred Theol...Studia Poinsotiana
I Introduction
II Subalternation and Theology
III Theology and Dogmatic Declarations
IV The Mixed Principles of Theology
V Virtual Revelation: The Unity of Theology
VI Theology as a Natural Science
VII Theology’s Certitude
VIII Conclusion
Notes
Bibliography
All the contents are fully attributable to the author, Doctor Victor Salas. Should you wish to get this text republished, get in touch with the author or the editorial committee of the Studia Poinsotiana. Insofar as possible, we will be happy to broker your contact.
Phenomics assisted breeding in crop improvementIshaGoswami9
As the population is increasing and will reach about 9 billion upto 2050. Also due to climate change, it is difficult to meet the food requirement of such a large population. Facing the challenges presented by resource shortages, climate
change, and increasing global population, crop yield and quality need to be improved in a sustainable way over the coming decades. Genetic improvement by breeding is the best way to increase crop productivity. With the rapid progression of functional
genomics, an increasing number of crop genomes have been sequenced and dozens of genes influencing key agronomic traits have been identified. However, current genome sequence information has not been adequately exploited for understanding
the complex characteristics of multiple gene, owing to a lack of crop phenotypic data. Efficient, automatic, and accurate technologies and platforms that can capture phenotypic data that can
be linked to genomics information for crop improvement at all growth stages have become as important as genotyping. Thus,
high-throughput phenotyping has become the major bottleneck restricting crop breeding. Plant phenomics has been defined as the high-throughput, accurate acquisition and analysis of multi-dimensional phenotypes
during crop growing stages at the organism level, including the cell, tissue, organ, individual plant, plot, and field levels. With the rapid development of novel sensors, imaging technology,
and analysis methods, numerous infrastructure platforms have been developed for phenotyping.
What is greenhouse gasses and how many gasses are there to affect the Earth.moosaasad1975
What are greenhouse gasses how they affect the earth and its environment what is the future of the environment and earth how the weather and the climate effects.
Seminar of U.V. Spectroscopy by SAMIR PANDASAMIR PANDA
Spectroscopy is a branch of science dealing the study of interaction of electromagnetic radiation with matter.
Ultraviolet-visible spectroscopy refers to absorption spectroscopy or reflect spectroscopy in the UV-VIS spectral region.
Ultraviolet-visible spectroscopy is an analytical method that can measure the amount of light received by the analyte.
Richard's aventures in two entangled wonderlandsRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
Deep Behavioral Phenotyping in Systems Neuroscience for Functional Atlasing a...Ana Luísa Pinho
Functional Magnetic Resonance Imaging (fMRI) provides means to characterize brain activations in response to behavior. However, cognitive neuroscience has been limited to group-level effects referring to the performance of specific tasks. To obtain the functional profile of elementary cognitive mechanisms, the combination of brain responses to many tasks is required. Yet, to date, both structural atlases and parcellation-based activations do not fully account for cognitive function and still present several limitations. Further, they do not adapt overall to individual characteristics. In this talk, I will give an account of deep-behavioral phenotyping strategies, namely data-driven methods in large task-fMRI datasets, to optimize functional brain-data collection and improve inference of effects-of-interest related to mental processes. Key to this approach is the employment of fast multi-functional paradigms rich on features that can be well parametrized and, consequently, facilitate the creation of psycho-physiological constructs to be modelled with imaging data. Particular emphasis will be given to music stimuli when studying high-order cognitive mechanisms, due to their ecological nature and quality to enable complex behavior compounded by discrete entities. I will also discuss how deep-behavioral phenotyping and individualized models applied to neuroimaging data can better account for the subject-specific organization of domain-general cognitive systems in the human brain. Finally, the accumulation of functional brain signatures brings the possibility to clarify relationships among tasks and create a univocal link between brain systems and mental functions through: (1) the development of ontologies proposing an organization of cognitive processes; and (2) brain-network taxonomies describing functional specialization. To this end, tools to improve commensurability in cognitive science are necessary, such as public repositories, ontology-based platforms and automated meta-analysis tools. I will thus discuss some brain-atlasing resources currently under development, and their applicability in cognitive as well as clinical neuroscience.
Professional air quality monitoring systems provide immediate, on-site data for analysis, compliance, and decision-making.
Monitor common gases, weather parameters, particulates.
Earliest Galaxies in the JADES Origins Field: Luminosity Function and Cosmic ...Sérgio Sacani
We characterize the earliest galaxy population in the JADES Origins Field (JOF), the deepest
imaging field observed with JWST. We make use of the ancillary Hubble optical images (5 filters
spanning 0.4−0.9µm) and novel JWST images with 14 filters spanning 0.8−5µm, including 7 mediumband filters, and reaching total exposure times of up to 46 hours per filter. We combine all our data
at > 2.3µm to construct an ultradeep image, reaching as deep as ≈ 31.4 AB mag in the stack and
30.3-31.0 AB mag (5σ, r = 0.1” circular aperture) in individual filters. We measure photometric
redshifts and use robust selection criteria to identify a sample of eight galaxy candidates at redshifts
z = 11.5 − 15. These objects show compact half-light radii of R1/2 ∼ 50 − 200pc, stellar masses of
M⋆ ∼ 107−108M⊙, and star-formation rates of SFR ∼ 0.1−1 M⊙ yr−1
. Our search finds no candidates
at 15 < z < 20, placing upper limits at these redshifts. We develop a forward modeling approach to
infer the properties of the evolving luminosity function without binning in redshift or luminosity that
marginalizes over the photometric redshift uncertainty of our candidate galaxies and incorporates the
impact of non-detections. We find a z = 12 luminosity function in good agreement with prior results,
and that the luminosity function normalization and UV luminosity density decline by a factor of ∼ 2.5
from z = 12 to z = 14. We discuss the possible implications of our results in the context of theoretical
models for evolution of the dark matter halo mass function.
Earliest Galaxies in the JADES Origins Field: Luminosity Function and Cosmic ...
Structure and functions of cell organelles.pptx
1. Structure and functions of cell
organelles
By
Jayalakshmi P.S.
Dept of Botany,
Sree Sankara College, Kalady
2.
3. Endoplasmic Reticulum (ER)
• It is a complex network of tubular membranes exclusively
present in the cytoplasm of the eukaryotic cell.
• network of membranes called cisternae.
• plays a major role in the production, processing, and transport
of proteins and lipids.
• The ER produces transmembrane proteins and lipids for its
membrane and many other cell components
including lysosomes, secretory vesicles, the Golgi apparatus,
cell membrane, and plant cell vacuoles.
4. • Endoplasmic reticulum has two major regions: Smooth
endoplasmic reticulum and Rough endoplasmic reticulum.
• Rough ER has ribosomes attached to the cytoplasmic side of
the membrane which produces proteins via translation.
• Rough ER also manufactures membranes and
secretory proteins.
• Smooth ER lacks attached ribosomes.
• function- carbohydrate and lipid synthesis.
Cholesterol and phospholipids are examples.
• also serves as a transitional area for vesicles
that transport ER products to various destinations.
5. • Rough and smooth ER are connected to one another
so that the proteins and membranes made by the
rough ER can freely move into the smooth ER for
transport to other parts of the cell.
• The space inside of the ER is called the lumen.
• The ER extends from the cell membrane through
the cytoplasm and forms a continuous connection
with the nuclear envelope.
• Since the ER is connected with the nuclear envelope,
the lumen of the ER and the space inside the nuclear
envelope are part of the same compartment.
6. Golgi body
• also known as a Golgi apparatus.
• It is a cell organelle that helps
process and package proteins and
lipid molecules, especially
proteins destined to be exported
from the cell.
• They are membrane-bound
organelle present in the cytosol of
the cell.
• Golgi apparatus is composed of
flat sacs known as cisternae.
7. • The Golgi apparatus is very polar.
• One end (cis face) acts as the "receiving"
department while the other (trans face) acts
as the "shipping" department.
• The cis face is closely associated with the
ER.
• Molecules synthesized in the ER exit via
special transport vesicles that carry their
contents to the Golgi apparatus.
• The vesicles fuse with Golgi cisternae
releasing their contents into the internal
portion of the membrane.
• The molecules are modified as they are
transported between cisternae layers.
8. • Functions of Golgi Bodies
• the main function is the packaging and secretion of
proteins.
• It receives proteins from ER and packages them into
membrane-bound vesicles, which are then transported to
various destinations, such as lysosomes, plasma membrane
or for secretion.
• They also take part in the transport of lipids and lysosome
formation.
9. • Post-translational modification and enzymatic processing
occur near the membrane surface in Golgi bodies, e.g.
phosphorylation, glycosylation, etc.
• It is the site for the synthesis of various glycolipids,
sphingomyelin, etc.
• In the plant cells, complex polysaccharides of the cell wall are
synthesized in the Golgi apparatus.
10. Mitochondria
• known as the Powerhouse of the cell.
• Main function- ATP production.
• They play a major role in breaking down nutrients and generating energy-
rich molecules for the cell.
• ‘mitochondrion’ is derived from the Greek words “mitos” = “thread” and
“chondrion” =“granules-like”,
• It was first described by a German pathologist named Richard Altmann in
1890.
• It’s a double-membraned, rod-shaped structure found in both plant
and animal cells.
• Its size ranges from 0.5 to 1.0 micrometer in diameter.
11. Structure of Mitochondria
• It has an inner and outer
membrane, with
an intermembrane space between
them.
• The area within the inner
membrane of the mitochondrion
is known as the matrix, which
contains the enzymes of
the Krebs (TCA) and fatty acid
cycles, alongside DNA, RNA,
ribosomes, and calcium granules.
12. • The outer membrane contains proteins
known as porins, which allow
movement of ions into and out of the
mitochondrion.
• The inner membrane is arranged
into cristae in order to increase the
surface area available for energy
production via oxidative
phosphorylation.
• The inner membrane contains a variety
of enzymes. It contains ATP
synthase which generates ATP in the
matrix, and transport proteins that
regulate the movement of metabolites
into and out of the matrix.
13. • Mitochondrial DNA is the small
circular chromosome found inside
mitochondria.
• They replicate by a process
called binary fission and can use this
to make multiple copies in one
mitochondrion.
• Their DNA has maternal
lineage which means their DNA is
passed from mother to child with little
change.
14. • Functions of Mitochondria
• It is the site of ATP synthesis and regulates the metabolic activity of
the cell.
• Plays an important role in apoptosis or programmed cell death;
Mitochondria release cytochrome C, which activates caspase, one of
the chief enzymes involved in destroying cells during apoptosis.
• Helps in maintaining an adequate concentration of calcium ions
within the compartments of the cell by quickly absorbing calcium ions
and holding them until they are needed.
15. • In brown adipose tissue mitochondria have an alternative
function of heat production using the electron transport chain,
a process called proton leak.
• It is also involved in various cellular activities like cellular
differentiation, cell signaling, cell senescence, controlling the
cell cycle, and also in cell growth.
16. Endosymbiont Hypothesis
• Mitochondria and chloroplasts are self-dividing structures.
• They contain their own DNA and protein-synthesizing machinery, similar
to that of prokaryotes.
• These phenomena have led to the theory that the two organelles are direct
descendants of prokaryotes that entered primitive nucleated cells.
• It could be a symbiotic association between nucleated hosts and
prokaryotic parasites.
• The hosts would provide the parasites with a
stable osmotic environment and easy access to nutrients, and the parasites
would repay the hosts by providing an oxidative ATP-producing system or
a photosynthetic energy-producing reaction.