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Vincent S. Smith Natural History Museum, London, U.K. Small pieces loosely joined Toward a unified theory of biodiversity for the web
Macro taxonomy The foundation for biodiversity research ,[object Object],[object Object],[object Object],Goal… ,[object Object],[object Object],[object Object],Data set… People… ,[object Object],[object Object],[object Object]
Micro taxonomy The process of taxonomic research ,[object Object],[object Object],[object Object],Sociology… ,[object Object],[object Object],[object Object],Methodology… Output… ,[object Object],[object Object],[object Object]
Micro taxonomy The process of taxonomic research ,[object Object],[object Object],[object Object],Methodology… ,[object Object],[object Object],[object Object],Sociology… Output… ,[object Object],[object Object],[object Object]
Traditional scholarly communication “ Paper-minds” Issues… ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Result… ,[object Object],[object Object],[object Object],[object Object]
Integrating macro & micro taxonomy Bridging the interface between policy and practice Communication ? Data People
New forms of communication Lessons for scholarly communication http://scratchpads.eu
What is a Scratchpad? A website for you & your community Your data 1 Published & reviewed on your site 3 Uploaded & tagged 2
What is a Scratchpad? A website for you & your community Your data 1 Published & reviewed on your site 3 Uploaded & tagged 2 Fast Intuitive Fit for use
What can Scratchpads do? Import, manage, search & browse: DNA & Phylogenies Literature Specimens Images
DNA & Phylogenies Specimens Literature Images What can Scratchpads do? Integration & connectivity within & between sites Taxonomy
+Administration -Change your site information -Change you front page -Change your logo -Activity and access logs +Backup -Backing up your data -Restoring your data +Bibliography -Creating a record -Importing from a ref. manager -Exporting to a reference manager +Blog -Creating and adding a blog +Custom Content -Defining a CCK -Importing from a spreadsheet -Creating a custom view +Fileshare -Creating and using a fileshare +Forum -Altering the forum settings -Creating a container for a forum -Creating a new forum -Creating a new topic inside a forum +Groups -Creating a group -Subscribing to a group +Image -Uploading & basic annotation -Linking image & location records -Linking image & specimen records -Linking image & publication records -Overlay annotations on images +Layout -Change your theme -Menus -Blocks and sidebars +Locations -Creating a record -Importing from a spreadsheet +Pages -Creating, editing, cloning & deleting -Configuring the panels template +Panels -Adding & configuring content -Creating a new panel -Citing a Panels page +Phylogeny -Adding a phylogenetic tree +Specimens -Creating a record -Importing from a spreadsheet -Linking specimen & location records -Linking specimen & pub. records +Tasks -Creating a tasklist +Taxonomy -Importing from a spreadsheet -Importing from ClassificationBank -Starting from scratch -Taxonomy manager -Displaying a classification -Adding names -Deleting names -Taxonomy & panels +Users -Your settings -Adding a new user -User roles and permissions -Adding and editing user profile fields -Logging in +Webform -Creating and using webforms What can Scratchpads do? In summary:
An ecosystem of communities Ants Bees Beetles Big-headed flies Birds Blackflies Ciliates Cockroaches Dragon Trees Dung Beetles False Buttonweed Flat worms Flies Foraminifera Fossil Insects Fungus Gnats Holometabola Leaf-miner Flies Lice Lichens of Bermuda Malvaceae Megalastrum ferns Milichiid flies Mosquitoes Mosses Nannotax fossils Nepticuloid moths Palms Pearl oysters Polychaete worms Scaleworms Termites Triticid grasses Weevils Wood Ferns Sulawesi Ferns Stick insects Sites: 130+ Users: 1500+ Pages: 170k Since March 2007
 
Dynamically built species pages A data management tool
Browsed through a taxonomy A data management tool
Including 3 rd  party content A data publishing tool
With data curation tools A data publishing tool
Listing all “authors” A data publishing tool
Dated, permanent & citable A data publishing tool
“ Small pieces loosely joined” Scratchpad impact 1. Bringing  data  together Biodiversity studies are data rich, poorly archived & ever changing 2. Bringing  people  together Biodiversity researchers are few in number, fragmented & highly distributed 3. Bringing  science  together Biodiversity science demands a different approach to addressing BIG questions
Questions?
 
 

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Small pieces loosely joined: towards a unified theory of biodiversity for the web.

  • 1. Vincent S. Smith Natural History Museum, London, U.K. Small pieces loosely joined Toward a unified theory of biodiversity for the web
  • 2.
  • 3.
  • 4.
  • 5.
  • 6. Integrating macro & micro taxonomy Bridging the interface between policy and practice Communication ? Data People
  • 7. New forms of communication Lessons for scholarly communication http://scratchpads.eu
  • 8. What is a Scratchpad? A website for you & your community Your data 1 Published & reviewed on your site 3 Uploaded & tagged 2
  • 9. What is a Scratchpad? A website for you & your community Your data 1 Published & reviewed on your site 3 Uploaded & tagged 2 Fast Intuitive Fit for use
  • 10. What can Scratchpads do? Import, manage, search & browse: DNA & Phylogenies Literature Specimens Images
  • 11. DNA & Phylogenies Specimens Literature Images What can Scratchpads do? Integration & connectivity within & between sites Taxonomy
  • 12. +Administration -Change your site information -Change you front page -Change your logo -Activity and access logs +Backup -Backing up your data -Restoring your data +Bibliography -Creating a record -Importing from a ref. manager -Exporting to a reference manager +Blog -Creating and adding a blog +Custom Content -Defining a CCK -Importing from a spreadsheet -Creating a custom view +Fileshare -Creating and using a fileshare +Forum -Altering the forum settings -Creating a container for a forum -Creating a new forum -Creating a new topic inside a forum +Groups -Creating a group -Subscribing to a group +Image -Uploading & basic annotation -Linking image & location records -Linking image & specimen records -Linking image & publication records -Overlay annotations on images +Layout -Change your theme -Menus -Blocks and sidebars +Locations -Creating a record -Importing from a spreadsheet +Pages -Creating, editing, cloning & deleting -Configuring the panels template +Panels -Adding & configuring content -Creating a new panel -Citing a Panels page +Phylogeny -Adding a phylogenetic tree +Specimens -Creating a record -Importing from a spreadsheet -Linking specimen & location records -Linking specimen & pub. records +Tasks -Creating a tasklist +Taxonomy -Importing from a spreadsheet -Importing from ClassificationBank -Starting from scratch -Taxonomy manager -Displaying a classification -Adding names -Deleting names -Taxonomy & panels +Users -Your settings -Adding a new user -User roles and permissions -Adding and editing user profile fields -Logging in +Webform -Creating and using webforms What can Scratchpads do? In summary:
  • 13. An ecosystem of communities Ants Bees Beetles Big-headed flies Birds Blackflies Ciliates Cockroaches Dragon Trees Dung Beetles False Buttonweed Flat worms Flies Foraminifera Fossil Insects Fungus Gnats Holometabola Leaf-miner Flies Lice Lichens of Bermuda Malvaceae Megalastrum ferns Milichiid flies Mosquitoes Mosses Nannotax fossils Nepticuloid moths Palms Pearl oysters Polychaete worms Scaleworms Termites Triticid grasses Weevils Wood Ferns Sulawesi Ferns Stick insects Sites: 130+ Users: 1500+ Pages: 170k Since March 2007
  • 14.  
  • 15. Dynamically built species pages A data management tool
  • 16. Browsed through a taxonomy A data management tool
  • 17. Including 3 rd party content A data publishing tool
  • 18. With data curation tools A data publishing tool
  • 19. Listing all “authors” A data publishing tool
  • 20. Dated, permanent & citable A data publishing tool
  • 21. “ Small pieces loosely joined” Scratchpad impact 1. Bringing data together Biodiversity studies are data rich, poorly archived & ever changing 2. Bringing people together Biodiversity researchers are few in number, fragmented & highly distributed 3. Bringing science together Biodiversity science demands a different approach to addressing BIG questions
  • 23.  
  • 24.  

Editor's Notes

  1. NHM Struggled to find someone describing a new species for DC2.
  2. NHM Struggled to find someone describing a new species for DC2.