Assisted restructure of web content for
paper-based presentation: a look at work flows
and data representations
Alice Heato...
This presentation is about:
Creating paper based publications from web content;
Restructuring data;
Looking at what happen...
Web interface

Import
(Excel file,
GBIF, etc.)
Content
author

Hyperlinks

Faceted
Search

Visitor
Scratchpads Visitor

Page

Hyperlink

Page

Hyperlink

Page

Location

Specimen

Taxon

Term

Taxonomic
Name

Content
Type...
Paper publication

? ? ? ? ? ?

Location

Specimen

Taxon

Term

Taxonomic
Name

Content
Type

Node
Reference

Scratchpads...
Enter
Publication
Specific
Data
Abstract,
Acknowledgement,
etc.

Select
existing
data
Taxon description,
Holotype,
etc.

Au...
Select
Taxon
Description
Fields

Add
new
Treatment

Select
Holotype
Select
Taxon
Select
Paratype
Override
Taxon
name
Scratchpads
Maintainer

Automated
Process
(Scratchpads)

User
Interface

XSD, XML,
Jason, etc.

Scratchpads
Data
(Web/Defa...
Entity

Entities

Field

Relational
Data

Field

Relational
Data

Relational
Data

Field

Relational
Data
Entities

Restructure through
User Interface

Entities
Mapping
Schema
Array

XSD Schema
Definition

Schema Array:
Internal structure to define how
to map entities and entity fields...
Final
schema
array

Restructed
entities

Process

Publication
XML
Horizontal flows
Schema
array

Select
existing
data
Automatic import
of related
content
Enter
Publication
Specific
Data

Res...
Vertical flows
Entity
Process

Entity

Final
schema
array

PHP
arrays

Schema
array

Entity

Fields

Relational
data

XML

...
Data constantly changes form;
This process happens both horizontally and
vertically;
Data flows are more important than dat...
Thank you ! Any questions ?

ViBRANT

Virtual Biodiversity

-infrastructure

SEVENTH FRAMEWORK
PROGRAMME

http://scratchpa...
Assisted restructure of web content for paper-based presentation: a look at workflows and data representations
Assisted restructure of web content for paper-based presentation: a look at workflows and data representations
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Assisted restructure of web content for paper-based presentation: a look at workflows and data representations

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Heaton, A., Rycroft, S., Baker, E., Bouton, K., Scott, B., Koureas, D., Livermore, L., Roberts, D., Smith, V. 2013 Assisted restructure of web content for paper-based presentation: a look at workflows and data representations. TDWG, Biodiversity Information Standards. Grand Hotel Mediterraneo Florence, Italy, 27 Oct - 1 Nov., 2013.

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Assisted restructure of web content for paper-based presentation: a look at workflows and data representations

  1. 1. Assisted restructure of web content for paper-based presentation: a look at work flows and data representations Alice Heaton, Simon Rycroft, Ed Baker, Katherine Bouton, Ben Scott, Koureas Dimitris, Laurence Livermore, Dave Roberts, Vince Smith
  2. 2. This presentation is about: Creating paper based publications from web content; Restructuring data; Looking at what happens to data at implementation level; Understanding the implications for data storage and processing.
  3. 3. Web interface Import (Excel file, GBIF, etc.) Content author Hyperlinks Faceted Search Visitor
  4. 4. Scratchpads Visitor Page Hyperlink Page Hyperlink Page Location Specimen Taxon Term Taxonomic Name Content Type Location Reference Content Author Content Type
  5. 5. Paper publication ? ? ? ? ? ? Location Specimen Taxon Term Taxonomic Name Content Type Node Reference Scratchpads Maintainer Content Type
  6. 6. Enter Publication Specific Data Abstract, Acknowledgement, etc. Select existing data Taxon description, Holotype, etc. Automatic import of related content Bibliographic references, images, etc. Publication
  7. 7. Select Taxon Description Fields Add new Treatment Select Holotype Select Taxon Select Paratype Override Taxon name
  8. 8. Scratchpads Maintainer Automated Process (Scratchpads) User Interface XSD, XML, Jason, etc. Scratchpads Data (Web/Default representation) Scratchpads Data (Publication representation) Online transmission Scratchpads Data (External service representation) REST, SOAP, etc. External service
  9. 9. Entity Entities Field Relational Data Field Relational Data Relational Data Field Relational Data
  10. 10. Entities Restructure through User Interface Entities
  11. 11. Mapping Schema Array XSD Schema Definition Schema Array: Internal structure to define how to map entities and entity fields to XML tags Schema Array Final Schema Array
  12. 12. Final schema array Restructed entities Process Publication XML
  13. 13. Horizontal flows Schema array Select existing data Automatic import of related content Enter Publication Specific Data Restructured entities Process Publication XML
  14. 14. Vertical flows Entity Process Entity Final schema array PHP arrays Schema array Entity Fields Relational data XML XSD Schema Schema array mapping
  15. 15. Data constantly changes form; This process happens both horizontally and vertically; Data flows are more important than data structures; In that context model abstraction and modularity is more important than data storage; Restructure and export code is sensitive to change: It need a robust architecture.
  16. 16. Thank you ! Any questions ? ViBRANT Virtual Biodiversity -infrastructure SEVENTH FRAMEWORK PROGRAMME http://scratchpads.eu Funded by Vibrant RI-261532.

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