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Scipy, Numpy and friends.
Michele Mattioni - mattioni@ebi.ac.uk
CompNeur group.

http://www.ebi.ac.uk/~mattioni/pylab_pres/
or
https://github.com/mattions/pylab_pres

                              EBI is an Outstation of the European Molecular Biology Laboratory.
Scipy, Numpy and friends by Michele Mattioni is licensed under
                     CC BY-NC-SA 3.0.

Permissions beyond the scope of this license may be available
               at https://github.com/mattions.
Go here:

http://www.ebi.ac.uk/~mattioni/pylab_pres/
                    or
  https://github.com/mattions/pylab_pres
Scipy and Numpy - http://www.scipy.org




 Data structure for
 mathematical operation
                          Collections of high level
 with speed in mind.
                          mathematical operations:
                          - regression
                          - interpolation
                          - optimization
                          - integration
Matplotlib - http://matplotlib.sourceforge.net/




         - Display and plot you data quickly
         - Different kind of plot available
Ipython - http://ipython.scipy.org




                      - Enhanced python console
                      - Trials and errors
                      encouraged
                      - Quick access to the help.
Plot of an exponential function
Difference between Console and Script


   Console               Program

   - Quick to write      - Slower to write
   - Messy to maintain   - Easier to maintain
HELP!

    Different ways to access help:


Console: name_of_the _function?
Online: http://docs.scipy.org/doc/

Suggested:
Tutorial http://www.scipy.org/Tentative_NumPy_Tutorial
Numpy array
Plotting
Importing your data and visualize them
Fitting the data

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Scipy, numpy and friends