The scientific method is a systematic process for solving problems through observation and experimentation. It involves asking questions, forming hypotheses, conducting experiments, analyzing data, and drawing conclusions. Mario used the scientific method to investigate why the color of a stream's water changes during heavy rains. He observed the problem, formed hypotheses about loose soil or lack of plants causing muddiness, designed an experiment to test his hypotheses, collected and analyzed the experimental data, and concluded that soil without plants causes runoff to become muddy during rains.