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Tatsuya M. Ikeda, W. John Rogers, Gerard Branlard,
  Roberto J. Peña, Silvia E. Lerner, Adriana Arrigoni,
      Wujun Ma, Rudi Appels, Odean Lukow, William
   Hurkman, Marie Appelbee, Mike Sissons, Jose M.
                            Carrillo and Zhonghu He




                   11th
                  IGW
Tatsuya M. Ikeda1, W. John Rogers2, Gerard Branlard3, Roberto J.
Peña4, Silvia E. Lerner5, Adriana Arrigoni5, Wujun Ma6, Rudi Appels6,
Odean Lukow7, William Hurkman8, Marie Appelbee9, Mike Sissons10,
                                 Jose M. Carrillo11 and Zhonghu He12

  1NationalAgriculture and Food Research Organization, Hiroshima, Japan.
  2CIISAS, CICPBA-BIOLAB AZUL, Facultad de Agronomí Azul, UNCPBA,
                                                            a,
                                      Argentina. CONICET INBA -CEBB-MdP.
         3INRA Station d'Amelioration des Plantes, Clermont- Ferrand, France.

                                                                 4CIMMYT Mexico.
                 5CRESCAA, Facultad de Agronomí Azul, UNCPBA, Argentina.
                                                      a,
        6Western Australia Department of Agriculture and Food, State Agriculture

                   Biotechnology Center, Murdoch University, Murdoch, Australia.
         7Agriculture and Agri-Food Canada, Cereal Research Centre, Winnipeg,

                                                                            Canada.
       8USDA Agricultural Research Service, Western Regional Research Center,

                                                                        Albany, USA.
          9 South Australian Research and Development Institute, Adelaide and

                                  LongReach Plant Breeders, Lonsdale, Australia.
                        10Tamworth Agricultural Institute, Calala, NSW, Australia.
                                   11Unidad de Genética, ETSIA, Madrid, Spain.
                 12Institute of Crop Science, National Wheat Improvement

                          Center/The National Key Facility for Crop Genetic
              Resources and Genetic Improvement, Chinese Academy of
                Agricultural Sciences, Beijing, and CIMMYT, China Office,
                                                              Beijing, China.
But technical difficulties
in allelic identification due
    to the complexity of the
   protein profile produced
   by each cultivar and the
             use of different
 nomenclature systems in
 different laboratories has
 historically interfered with
      information exchange
between research groups
The current
                             contribution
                            summarises
                     progress made by
                  this group and seeks
                         to comment on
                 remaining challenges


  Plus aims to place the findings in the
context of the Wheat Gene Catalogue...
In the current wheat gene
   catalogue (McIntosh et            Baguette 12 PI Isla Verde
                                            Lona
                                     Baguette 11        B. Guaraní
                                                       Baguette 10
                                      K. Chamaco

       al., 2008 and annual            B. Brasil
                                 INIA Churrinche
                                     Baguette 13
                                        Bio 3003
                                                       Baguette 20
                                                         PI Puntal
                                                         K. Volcan
                                                         K. Escudo
                                                        PI Colibrí
                                 PI Cinco cerros
 supplements), how many                PI Alazán
                                       B. Mataco
                                      PI Huenpan
                                                          B. Bigua
                                                       PI Amanecer
                                                       PI Molinero
                                        B. Guapo K.PI Redomón
                                                         Sagitario

  alleles are there at each           Pampa INTA
                                        Bio 3000          Bio 3002
                                                        B. Yatasto
                                      B. Patacón B. 75 Aniversario
                                       K. Delfin
                                       K. Jabalí         B. Sureño

   of the three Glu-3 loci?            Centinela
                                       K. Proteo
                                       B. Halcón
                                          Greina
                                                         B. Pronto
                                                          Bio 1003
                                                         B. Raudal
                                                       K. Estrella

            Enough to allow           B. Arriero
                                        K. Chajá
                                                          Bio 2002
                                                         K. Flecha
                                    B. Manantial K. Capricornio
                                                           ACA 901
                                     PI Imperial          K. Tauro
        Lerner et al. (2009            K. Castor
                                       PI Gaucho
                                    B. Chambergo
                                    Agrovic 2000
                                                          Bio 2000
                                                       K. Guerrero
                                                       B. Baqueano
                                  K. Don Enrique INIA Tijetera

           Journal of Cereal         T. Chapelco
                                     INIA Pus 14
                                      K. Cacique
                                       PI Granar
                                                          Bio 1000
                                                       K. Martillo
                                                       INIA Condor
                                                           PI Real
                                                         T. Nevado

    Science 49: 337–345)             PI Milenium
                                  PI Don Umberto
                                       K. Dragon
                                        PI Elite
                                                        PI Federal
                                                        K. Gavilán
                                                          Bio 3004
                                                            Sirirí
                                            Onix            Cronox
         to use them, along               Zorzal
                                        Bio 1002           ACA 801
                                                          PI Oasis
                                        K. Zorro K. Escorpión
                                        Bio 1001
                                         B. Ombú        B. Puelche

        with variation in the        Baguette 21
                                      B. Charrúa
                                                           ACA 223
                                                       B. Panadero
                                      B. Arrayán Coop.B. Farol
                                                           Nanihue
                                    Coop. Liquén         B. Malevo
     HMW-GSs, to find 93           B. Guatimozin
                                      PI Cauquen Coop.Napostá
                                      B. Ranquel
                                         ACA 601
                                                        B.
                                                            Nahuel
                                                           ACA 301
                                                           ACA 315
                                         ACA 303        B. Norteño
    allelic combinations in             Bio 3001
                                       B. Poncho
                                         ACA 304
                                  Las Rosas INTA
                                                          Bio 2001
                                                       B. Mejorpan
                                                           ACA 302
                                                          B. Pingo
                                    B. Chacarero
            119 Argentinean              ACA 201         B. Aguará

                                                                 0,00   0,24   0,48   0,72   0,96


                  cultivars...
“The main ambiguities from these different classification
                                                  systems
                          can be summarized as follows:
     1) at the Glu-A3 locus, both Glu-A3a and Glu-A3c were
       reported for the same cultivar, and similarly, Glu-A3a,
    Glu-A3b, Glu-A3c, Glu-A3d were reported to be identical
                                                    to Glu-A3e;
          2) at the Glu-B3 locus, results differed for Glu-B3b and
               Glu-B3g, and for Glu-B3f and Glu-B3g in the same
                                                           cultivars;
              3) at the Glu-D3 locus, there was ambiguity between
            Glu-D3a and Glu-D3c, and between Glu-D3a and Glu-
                                         D3b in the same cultivars.
                                     As a consequence of these
        problems, reports of correlations between certain allelic
          forms of LMW-GS and quality parameters in common
                           wheat have often been contradictory .
In Australian cultivars (Gupta and Shepherd 1988; Gupta
      et al. 1989b, 1990a and b, 1991, 1994; Metakovsky,
1990), for Rmax (Maximum dough resistance), the Glu-A3
        alleles ranked b>d>e>c, the Glu-B3 alleles ranked
         i>b=a>e=f=g=h>c and the Glu-D3 alleles ranked:
      e>b>a>c>d. The allele b of both Glu-A3 and Glu-D3
   seemed to be associated with more extensible wheats.
   Cornish et al. (1993) found that the Glu-3 allelic pattern bbb
    (at Glu-A3, Glu-B3 and Glu-D3, respectively) gave the best
 extensibility, especially when combined with the Glu-1 pattern
  bba (at Glu-A1, Glu-B1 and Glu-D1, respectively). Glu-3 bbc
 also had excellent extensibility. They also concluded that Glu-
A3e was detrimental to extensibility by virtue of being null and
 that Glu-B3 c,d and g had medium to weak dough properties.
 They suggested that the best combinations for Glu-3 are bbb,
                                                    bbc and cbc.
Branlard et al. (2001) also compared allelic effects on
    quality parameters, finding that, for dough strength, the
  rankings were as follows: at Glu-A3: a=d=f≥e, at Glu-B3:
          b’≥d=c=c’=b=g>i>f≥j and at Glu-D3: a≥b=d=c. For
                 extensibility at Glu-A3: d=a=f≥e, at Glu-B3:
       i≥b’≥c=c’=g>b=f=d>j, while, at Glu-D3, no significant
                                      differences were found.
   Luo et al. (2001) found that, in New Zealand cultivars: (i) the Glu-
    A3 alleles ranked: d>c=e, coinciding with Gupta et al (1990a) for
     Rmax; (ii) the Glu-B3 alleles ranked: b>g, which coincides both
          with Gupta (1990a) and Cornish (1993); and (iii) the Glu-D3
                                                    alleles ranked: b>a.
         In durum wheat, allele Glu-B3s (formerly Glu-B3b) encoding
          subunits 8+9+13+16 and allele Glu-A3k (formerly Glu-A3b)
                  encoding subunit 5 are associated with poor quality
It can be seen that not all the published allelic rankings
     are consistent, implying considerable further work is
                needed to be able to clarify the situation...
In this
  collection of
cultivars, Glu-
A3a, Glu-A3b,
 Glu-A3c and
Glu-A3f could
     be readily
 distinguished



           Difficult to
     distinguish Glu-
      A3e (null) and
      Glu-A3f . Both
        tended to be
         identified as
                  null.
AndGlu-A3d and
Glu-A3g could only
be distinguished by
the gliadin encoded
by Gli-A1o linked to
            Glu-A3d
Glu-B3d,
    Glu-B3h
   and Glu-
   B3i each
     carried
slow bands
 not always
     easy to
 distinguish

Glu-B3b almost
 coincided with
  Glu-B3a, but
 Glu-B3b band
    was usually
     lighter and
         thinner
Glu-B3f could
not be readily
distinguished
from Glu-B3g


         Alleles
  classified as
 Glu-B3b, Glu-
 B3g and Glu-
B3i were often
   identified as
Glu-B3ab, Glu-
B3ac and Glu-
 B3ad by 2DE
Again the
  gliadins
 can help
Bands can be faintly
       stained and not
         always easy to
  distinguish, although
                technical
  improvements have
           often allowed
   discrimination of, for
    example, Glu-D3a,
Glu-D3b and Glu-D3d .


              Recourse to
             2DE, MALDI-
           TOF or PCR is
            often required
For example, Glu-A3d and Glu-A3g (used gliadins in
1D) could be distinguished from each other by 2DE
Glu-B3a and Glu-B3b, difficult in 1D, can be distinguished in
                                                        2DE
Glu-D3c and Glu-D3l, could
                                          be distinguished in 2DE
Nonetheless, there are alleles were
   not readily distinguished by this
                            method
Cause
 difficulties in
      1D SDS-
   PAGE, but
        can be
distinguished
          here.
Cause
 difficulties in
      1D SDS-
   PAGE, but
        can be
distinguished
          here.
Cause
 difficulties in
      1D SDS-
   PAGE, but
        can be
distinguished
          here.
Control: 8-hour day 20°C, 16-hour
                        night 16°C



  Treatment: Starting 16 days after
anthesis, 8-hour day 35°C, 16-hour
            day 20°C for three days
In isogenic     Stress   Control
     lines for
  LMW-GSs
subjected to
heat stress,
    the allele
     Glu-B3h
   showed a
reduction of
  14% in the
      relative
  quantity of
       protein
 detected in
 SDS-PAGE
Questio
                         n:




         ... and
therefore only
          a true
 collaboration             In relative
      between          terms only a
 many groups               handful of
   will provide         alleles have
     sufficient                 been
  resources to         assessed for
       allow all             quality...
          allelic
variants to be
   evaluated...
Total Glu-
    A3 50
Total Glu-
    B3 30
Total Glu-
                       D3 13
Grand Total Glu-3
               93
This is in preparation for
 the production of the full
 catalogue for publication
in the Proceedings of the
      International Wheat
    Genetics Symposium,
         Yokohama, 2013

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Update on low-molecular-weight glutenin subunit identif

  • 1. Tatsuya M. Ikeda, W. John Rogers, Gerard Branlard, Roberto J. Peña, Silvia E. Lerner, Adriana Arrigoni, Wujun Ma, Rudi Appels, Odean Lukow, William Hurkman, Marie Appelbee, Mike Sissons, Jose M. Carrillo and Zhonghu He 11th IGW
  • 2. Tatsuya M. Ikeda1, W. John Rogers2, Gerard Branlard3, Roberto J. Peña4, Silvia E. Lerner5, Adriana Arrigoni5, Wujun Ma6, Rudi Appels6, Odean Lukow7, William Hurkman8, Marie Appelbee9, Mike Sissons10, Jose M. Carrillo11 and Zhonghu He12 1NationalAgriculture and Food Research Organization, Hiroshima, Japan. 2CIISAS, CICPBA-BIOLAB AZUL, Facultad de Agronomí Azul, UNCPBA, a, Argentina. CONICET INBA -CEBB-MdP. 3INRA Station d'Amelioration des Plantes, Clermont- Ferrand, France. 4CIMMYT Mexico. 5CRESCAA, Facultad de Agronomí Azul, UNCPBA, Argentina. a, 6Western Australia Department of Agriculture and Food, State Agriculture Biotechnology Center, Murdoch University, Murdoch, Australia. 7Agriculture and Agri-Food Canada, Cereal Research Centre, Winnipeg, Canada. 8USDA Agricultural Research Service, Western Regional Research Center, Albany, USA. 9 South Australian Research and Development Institute, Adelaide and LongReach Plant Breeders, Lonsdale, Australia. 10Tamworth Agricultural Institute, Calala, NSW, Australia. 11Unidad de Genética, ETSIA, Madrid, Spain. 12Institute of Crop Science, National Wheat Improvement Center/The National Key Facility for Crop Genetic Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, Beijing, and CIMMYT, China Office, Beijing, China.
  • 3. But technical difficulties in allelic identification due to the complexity of the protein profile produced by each cultivar and the use of different nomenclature systems in different laboratories has historically interfered with information exchange between research groups
  • 4. The current contribution summarises progress made by this group and seeks to comment on remaining challenges Plus aims to place the findings in the context of the Wheat Gene Catalogue...
  • 5. In the current wheat gene catalogue (McIntosh et Baguette 12 PI Isla Verde Lona Baguette 11 B. Guaraní Baguette 10 K. Chamaco al., 2008 and annual B. Brasil INIA Churrinche Baguette 13 Bio 3003 Baguette 20 PI Puntal K. Volcan K. Escudo PI Colibrí PI Cinco cerros supplements), how many PI Alazán B. Mataco PI Huenpan B. Bigua PI Amanecer PI Molinero B. Guapo K.PI Redomón Sagitario alleles are there at each Pampa INTA Bio 3000 Bio 3002 B. Yatasto B. Patacón B. 75 Aniversario K. Delfin K. Jabalí B. Sureño of the three Glu-3 loci? Centinela K. Proteo B. Halcón Greina B. Pronto Bio 1003 B. Raudal K. Estrella Enough to allow B. Arriero K. Chajá Bio 2002 K. Flecha B. Manantial K. Capricornio ACA 901 PI Imperial K. Tauro Lerner et al. (2009 K. Castor PI Gaucho B. Chambergo Agrovic 2000 Bio 2000 K. Guerrero B. Baqueano K. Don Enrique INIA Tijetera Journal of Cereal T. Chapelco INIA Pus 14 K. Cacique PI Granar Bio 1000 K. Martillo INIA Condor PI Real T. Nevado Science 49: 337–345) PI Milenium PI Don Umberto K. Dragon PI Elite PI Federal K. Gavilán Bio 3004 Sirirí Onix Cronox to use them, along Zorzal Bio 1002 ACA 801 PI Oasis K. Zorro K. Escorpión Bio 1001 B. Ombú B. Puelche with variation in the Baguette 21 B. Charrúa ACA 223 B. Panadero B. Arrayán Coop.B. Farol Nanihue Coop. Liquén B. Malevo HMW-GSs, to find 93 B. Guatimozin PI Cauquen Coop.Napostá B. Ranquel ACA 601 B. Nahuel ACA 301 ACA 315 ACA 303 B. Norteño allelic combinations in Bio 3001 B. Poncho ACA 304 Las Rosas INTA Bio 2001 B. Mejorpan ACA 302 B. Pingo B. Chacarero 119 Argentinean ACA 201 B. Aguará 0,00 0,24 0,48 0,72 0,96 cultivars...
  • 6. “The main ambiguities from these different classification systems can be summarized as follows: 1) at the Glu-A3 locus, both Glu-A3a and Glu-A3c were reported for the same cultivar, and similarly, Glu-A3a, Glu-A3b, Glu-A3c, Glu-A3d were reported to be identical to Glu-A3e; 2) at the Glu-B3 locus, results differed for Glu-B3b and Glu-B3g, and for Glu-B3f and Glu-B3g in the same cultivars; 3) at the Glu-D3 locus, there was ambiguity between Glu-D3a and Glu-D3c, and between Glu-D3a and Glu- D3b in the same cultivars. As a consequence of these problems, reports of correlations between certain allelic forms of LMW-GS and quality parameters in common wheat have often been contradictory .
  • 7. In Australian cultivars (Gupta and Shepherd 1988; Gupta et al. 1989b, 1990a and b, 1991, 1994; Metakovsky, 1990), for Rmax (Maximum dough resistance), the Glu-A3 alleles ranked b>d>e>c, the Glu-B3 alleles ranked i>b=a>e=f=g=h>c and the Glu-D3 alleles ranked: e>b>a>c>d. The allele b of both Glu-A3 and Glu-D3 seemed to be associated with more extensible wheats. Cornish et al. (1993) found that the Glu-3 allelic pattern bbb (at Glu-A3, Glu-B3 and Glu-D3, respectively) gave the best extensibility, especially when combined with the Glu-1 pattern bba (at Glu-A1, Glu-B1 and Glu-D1, respectively). Glu-3 bbc also had excellent extensibility. They also concluded that Glu- A3e was detrimental to extensibility by virtue of being null and that Glu-B3 c,d and g had medium to weak dough properties. They suggested that the best combinations for Glu-3 are bbb, bbc and cbc.
  • 8. Branlard et al. (2001) also compared allelic effects on quality parameters, finding that, for dough strength, the rankings were as follows: at Glu-A3: a=d=f≥e, at Glu-B3: b’≥d=c=c’=b=g>i>f≥j and at Glu-D3: a≥b=d=c. For extensibility at Glu-A3: d=a=f≥e, at Glu-B3: i≥b’≥c=c’=g>b=f=d>j, while, at Glu-D3, no significant differences were found. Luo et al. (2001) found that, in New Zealand cultivars: (i) the Glu- A3 alleles ranked: d>c=e, coinciding with Gupta et al (1990a) for Rmax; (ii) the Glu-B3 alleles ranked: b>g, which coincides both with Gupta (1990a) and Cornish (1993); and (iii) the Glu-D3 alleles ranked: b>a. In durum wheat, allele Glu-B3s (formerly Glu-B3b) encoding subunits 8+9+13+16 and allele Glu-A3k (formerly Glu-A3b) encoding subunit 5 are associated with poor quality It can be seen that not all the published allelic rankings are consistent, implying considerable further work is needed to be able to clarify the situation...
  • 9. In this collection of cultivars, Glu- A3a, Glu-A3b, Glu-A3c and Glu-A3f could be readily distinguished Difficult to distinguish Glu- A3e (null) and Glu-A3f . Both tended to be identified as null.
  • 10. AndGlu-A3d and Glu-A3g could only be distinguished by the gliadin encoded by Gli-A1o linked to Glu-A3d
  • 11. Glu-B3d, Glu-B3h and Glu- B3i each carried slow bands not always easy to distinguish Glu-B3b almost coincided with Glu-B3a, but Glu-B3b band was usually lighter and thinner
  • 12. Glu-B3f could not be readily distinguished from Glu-B3g Alleles classified as Glu-B3b, Glu- B3g and Glu- B3i were often identified as Glu-B3ab, Glu- B3ac and Glu- B3ad by 2DE
  • 13. Again the gliadins can help
  • 14. Bands can be faintly stained and not always easy to distinguish, although technical improvements have often allowed discrimination of, for example, Glu-D3a, Glu-D3b and Glu-D3d . Recourse to 2DE, MALDI- TOF or PCR is often required
  • 15. For example, Glu-A3d and Glu-A3g (used gliadins in 1D) could be distinguished from each other by 2DE
  • 16. Glu-B3a and Glu-B3b, difficult in 1D, can be distinguished in 2DE
  • 17. Glu-D3c and Glu-D3l, could be distinguished in 2DE Nonetheless, there are alleles were not readily distinguished by this method
  • 18. Cause difficulties in 1D SDS- PAGE, but can be distinguished here.
  • 19. Cause difficulties in 1D SDS- PAGE, but can be distinguished here.
  • 20. Cause difficulties in 1D SDS- PAGE, but can be distinguished here.
  • 21.
  • 22.
  • 23.
  • 24.
  • 25.
  • 26.
  • 27. Control: 8-hour day 20°C, 16-hour night 16°C Treatment: Starting 16 days after anthesis, 8-hour day 35°C, 16-hour day 20°C for three days
  • 28. In isogenic Stress Control lines for LMW-GSs subjected to heat stress, the allele Glu-B3h showed a reduction of 14% in the relative quantity of protein detected in SDS-PAGE
  • 29. Questio n: ... and therefore only a true collaboration In relative between terms only a many groups handful of will provide alleles have sufficient been resources to assessed for allow all quality... allelic variants to be evaluated...
  • 30.
  • 31.
  • 32.
  • 33. Total Glu- A3 50
  • 34.
  • 35.
  • 36. Total Glu- B3 30
  • 37. Total Glu- D3 13 Grand Total Glu-3 93
  • 38.
  • 39.
  • 40.
  • 41.
  • 42.
  • 43.
  • 44.
  • 45.
  • 46. This is in preparation for the production of the full catalogue for publication in the Proceedings of the International Wheat Genetics Symposium, Yokohama, 2013