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R and the Forest Vegetation Simulator
Interfacing an old school model with R
MASON EARLES
D-RUG 02.13.13
What’s the forest vegetation simulator (FVS)?
What did I want to do with it?
Where does R fit in?
What’s FVS?
Models forest growth, mortality and fire
What’s FVS?

- Developed and commonly
used by US Forest Service

- FORTRAN language

- Empirically based
growth/mortality

- Individual trees modeled

- Tree interactions affect growth
and mortality
My goal: Use FVS ‘Monte Carlo style’ with
stochastic fire and drought events

Problem: I don’t know the FORTRAN language;
FVS is a mess of code maintained by a couple of
people
But I know R!
Open-FVS = publicly available source
code…API linking FVS to R
FVS can now be run from R!
A few things I’ve done with linked R + FVS
Batch modify keyword code files w/ R
   Keyword file 
Stochastic fire events
   Burn probability = 40 years
%dopar% for parallel simulations
Stochastic drought events
   Similar approach for drought events
Simulation
Examples:

#runs = 100

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R and the forest vegetation simulator