Quantum Biology
Francesca Davis
Physics 112, Spring 2014
Topics
• Photosynthesis and Superposition
• Olfaction and ElectronTunneling
• Navigation in birds and Entanglement
• Consciousness may arise from quantum
vibrations in microtubules
Photosynthesis occurs
in
Chloroplast’s
Thylakoid Membrane
Resonant EnergyTransfer uses coherent
superposition for increased efficiency
Resonant EnergyTransfer
• Previously assumed that excitons incoherently
jumped around between chromophores but…
• Quantum effects better explain efficient light
harvesting (50% to 90%)
• Potential for improving solar cells or
photosynthetic computing?
Resonant EnergyTransfer
• Delocalized excitation across several
chromophores
• Electronic coherence among chromophores
(quantum superposition of the electronically
excited states of different molecules)
• Allows photon to find most efficient path
• Some decoherence needed to ensure that energy
doesn’t flow the wrong way -Do let the door hit you on
your way in…
Quantum Effects and Olfaction
• Shape theory of smell -Shapes of odorant and
receptor must fit together to transduce signal.
• Problems with this theory:
• Molecules with same shape but different vibrations
typically have different smells
• Molecules with different shapes but similar vibrational
spectra smell similar
ElectronTunneling
• In Classical Mechanics, electron would need
enough energy to get through the barrier
(molecules)
• In Quantum mechanics, the particle can
“borrow” energy from molecules around it
• Vibrations of particle and barrier are coherent.
The process of smell via electron tunneling: (a), an electron in the nasal receptor finds its
way to the donor component of the receptor; (b) and (c), a scent molecule’s vibrational
frequency enables the electron to tunnel to a different energy state; (d) electron travels to
the acceptor unit and molecule leaves. Credit: Marshall Stoneham, et al.
Read more at: http://phys.org/news89542035.html#jCp
Navigation in Birds
• Cryptochrome protein in Birds’ eyes have pairs of
electrons quantumly entangled
• If one electron moves over a few nanometers it
will experience Earth’s magnetic field differently
• Triggers chemical reactions in optical cells and
ultimately behavioral pathways
Quantum Entanglement
• “Spooky action at a distance”
• Glove analogy
• Collapse of wave function when measured
• Measurement terminates the evolution of delocalized objects
Consciousness
• Orchestrated Objective Reduction
• Controversial theory –Brain is “too wet, warm and noisy”
• Consciousness due to quantum vibrations in microtubules
• Cytoskeletal element important to cellular structure and
transport
• Synaptic inputs “orchestrate” quantum vibrations in
microtubules.
Sources
• Gane et al. (2013) MolecularVibration-Sensing Component of Human Olfaction. PLoS ONE.
• Maliszweski, P. Several Failed Attempts to Explain Quantum Entanglement. McSweeney’s
http://www.mcsweeneys.net/
• Palmer, J. (2013) ‘Quantum smell’ IdeaGains Ground. BBC News,
http://www.bbc.com/news/science-environment-21150046
• Pratt, C. , Cornely, K. (2014) Essential Biochemistry 3rd. Ed.,Wiley.
• http://www.universetoday.com/109525/quantum-entanglement-explained/
• QuantumTunnelling http://en.wikipedia.org/wiki/Quantum_tunnelling, Accessed May 3rd, 2014.
• Quantum Entanglement,
http://en.wikipedia.org/wiki/Quantum_entanglement#Methods_of_creating_entanglement ,
Accessed May 3rd, 2014.

Quantum biology

  • 1.
  • 2.
    Topics • Photosynthesis andSuperposition • Olfaction and ElectronTunneling • Navigation in birds and Entanglement • Consciousness may arise from quantum vibrations in microtubules
  • 3.
  • 4.
    Resonant EnergyTransfer usescoherent superposition for increased efficiency
  • 5.
    Resonant EnergyTransfer • Previouslyassumed that excitons incoherently jumped around between chromophores but… • Quantum effects better explain efficient light harvesting (50% to 90%) • Potential for improving solar cells or photosynthetic computing?
  • 6.
    Resonant EnergyTransfer • Delocalizedexcitation across several chromophores • Electronic coherence among chromophores (quantum superposition of the electronically excited states of different molecules) • Allows photon to find most efficient path • Some decoherence needed to ensure that energy doesn’t flow the wrong way -Do let the door hit you on your way in…
  • 7.
    Quantum Effects andOlfaction • Shape theory of smell -Shapes of odorant and receptor must fit together to transduce signal. • Problems with this theory: • Molecules with same shape but different vibrations typically have different smells • Molecules with different shapes but similar vibrational spectra smell similar
  • 8.
    ElectronTunneling • In ClassicalMechanics, electron would need enough energy to get through the barrier (molecules) • In Quantum mechanics, the particle can “borrow” energy from molecules around it • Vibrations of particle and barrier are coherent.
  • 9.
    The process ofsmell via electron tunneling: (a), an electron in the nasal receptor finds its way to the donor component of the receptor; (b) and (c), a scent molecule’s vibrational frequency enables the electron to tunnel to a different energy state; (d) electron travels to the acceptor unit and molecule leaves. Credit: Marshall Stoneham, et al. Read more at: http://phys.org/news89542035.html#jCp
  • 10.
    Navigation in Birds •Cryptochrome protein in Birds’ eyes have pairs of electrons quantumly entangled • If one electron moves over a few nanometers it will experience Earth’s magnetic field differently • Triggers chemical reactions in optical cells and ultimately behavioral pathways
  • 11.
    Quantum Entanglement • “Spookyaction at a distance” • Glove analogy • Collapse of wave function when measured • Measurement terminates the evolution of delocalized objects
  • 12.
    Consciousness • Orchestrated ObjectiveReduction • Controversial theory –Brain is “too wet, warm and noisy” • Consciousness due to quantum vibrations in microtubules • Cytoskeletal element important to cellular structure and transport • Synaptic inputs “orchestrate” quantum vibrations in microtubules.
  • 14.
    Sources • Gane etal. (2013) MolecularVibration-Sensing Component of Human Olfaction. PLoS ONE. • Maliszweski, P. Several Failed Attempts to Explain Quantum Entanglement. McSweeney’s http://www.mcsweeneys.net/ • Palmer, J. (2013) ‘Quantum smell’ IdeaGains Ground. BBC News, http://www.bbc.com/news/science-environment-21150046 • Pratt, C. , Cornely, K. (2014) Essential Biochemistry 3rd. Ed.,Wiley. • http://www.universetoday.com/109525/quantum-entanglement-explained/ • QuantumTunnelling http://en.wikipedia.org/wiki/Quantum_tunnelling, Accessed May 3rd, 2014. • Quantum Entanglement, http://en.wikipedia.org/wiki/Quantum_entanglement#Methods_of_creating_entanglement , Accessed May 3rd, 2014.

Editor's Notes

  • #2 Image: http://www.willamette.edu/~gorr/classes/cs449/brain.html
  • #4 Image: http://www.uni-muenchen.de/einrichtungen/zuv/uebersicht/komm_presse/verteiler/bilder/startseitenmeldung/2013/maischloroplast_en_535_web.png Showing antenna pigments, light harvesting complexes etc. Stroma, Lumen… Chromophore is moiety in a pigment molecule that absorbs light giving pigment it’s characteristic color.
  • #5 Exciton transfer aka resonance energy transfer: “precisely aligned pigment molecules transfer energy to chlorophyll in the reaction center.” Essential Biochemistry 3rd Ed. Image from: http://hyperphysics.phy-astr.gsu.edu/hbase/biology/antpho.html
  • #6 Exciton = electron + electron hole Image: http://cs.swansea.ac.uk/visualcomputing/?tag=photon-mapping
  • #7 Exciton = electron + electron hole Image: http://cs.swansea.ac.uk/visualcomputing/?tag=photon-mapping
  • #8 Luca Turin’s theory. Tested with normal and deuterated molecules. Drosophila can tell difference in Acetophenone. Also Fish. Humans tested with musk odorants that were normal and deuterated. Found a difference in smell. While a wide variety of molecular shapes for wildtype musk molecules all are variations on same type of smell. Secondary descriptors of Animalic, sweet oily, etc., Deuterated versions all less musky and more “burnt, roasted, nutty.” Vibration in C-H bonds (stretch, wag, scissor) hypothesized to be important to smell. Deuteration alters this vibration. “…Vibrational spectra a better predictor of odor character than shape discriptors.” Gane et al. (2013) Molecular Vibration-Sensing Component in Human Olfaction. Carvone enatiomers: speamint and caraway Image: http://www.ambergris.co.nz/
  • #9 http://www.sciencedaily.com/articles/q/quantum_tunnelling.htm Image: http://upload.wikimedia.org/wikipedia/commons/a/a6/The_Childrens_Museum_of_Indianapolis_-_Musk_ox_skull_-_detail_2.jpg
  • #10 G coupled protein receptor. Should have 7 transmembrane domains but they only show five. Draw membrane and also G protein coupled to intracellular domain.
  • #11 Image: http://www.waddensea-worldheritage.org/sites/default/files/images/055_barnacle_geese_eisermann_0704.jpg
  • #12 Image: http://www.huffingtonpost.co.uk/2012/10/27/migrating-birds-dying-rspb_n_2028756.html E.g. Photons entangled with regards to polarization. Nonlinear crystal splits a photon into two entangled photons. Total E and momenta conserved. http://en.wikipedia.org/wiki/Spontaneous_parametric_down-conversion Subatomic particle decays into two particles. Electrons can be confined with quantum dots to become entangled. “Excitation and emission of quantum dots highly tunable.” confines excitons in three dimensions. http://en.wikipedia.org/wiki/Quantum_dot
  • #13 http://phys.org/news/2014-01-discovery-quantum-vibrations-microtubules-corroborates.html Penrose Synaptic input orchestrates consciousness. Other research suggests Anesthesia may act on microtubules. EEG waves may result from microtubule quantum vibrations. Objective Reduction seems to correspond to wave collapse???? Image: http://www.uni-leipzig.de/~pwm/web/?section=introduction&page=neurons
  • #14 Images: http://jonlieffmd.com/blog/is-the-primary-cilium-a-cells-antenna-or-its-brain and http://www.doesntevenmakesense.com/dynamic-content/2012/10/30/the-inner-life-of-the-cell-harvard-cell-animation.html also https://www.youtube.com/watch?v=wJyUtbn0O5Y Bottom Image: http://www.uni-leipzig.de/~pwm/web/?section=introduction&page=neurons