This study evaluated the low-temperature tolerance of rice seedlings by measuring root depth after pruning and exposing plants to 15/13°C for 7 days. Root depth was found to differ significantly among accessions. Desvauxii and Kon Suito showed exceptional root growth under low temperatures, with root depths comparable to local varieties grown under normal temperatures. Crosses were initiated between the two tolerant accessions and local varieties to develop populations for mapping quantitative trait loci associated with root development under low temperatures.