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PhenoMiner -integrating phenotype values for multiple strains

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Jennifer Smith
Technology
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Rat Genome Database rgd.mcw.edu PhenoMiner: Integrating Phenotype Measurement Values for Multiple Strains Mary Shimoyama XVIIIth International Workshop on Genetic Systems in the Rat – Kyoto, Japan
PhenoMiner Project ,[object Object]
Standardized formats using ontologies for sample, measurement, method and experimental conditions
Data mining and presentation tool
Links to originating data sources
Comprehensive phenotype profiles for strains, substrains, congenics, knockouts, mutants
Public repository for researchers to post data – funding agency interest
Development of the rat phenome – linking phenotype to genotype,[object Object]
Accessing PhenoMiner
Creating a Query
Creating a Query
Creating a Query
Creating a Query
Creating a Query
Creating a Query
Creating a Query
Creating a Query
Creating a Query
Creating a Query
Results
Results
Results
Results
Results
Sample Data Results
Sample Data Results
Sample Data Results Measurement and Methods
Sample Data Results Experimental Conditions Measurement and Methods
Uses ,[object Object]
Compare a phenotype across ages for one or more strains
Compare phenotype values for a set of substrains
Comprehensive phenotype values for a single or multiple strains
Compare results from multiple methods ,[object Object]
Compare a phenotype across ages for one or more strains
Compare phenotype values for a set of substrains
Comprehensive phenotype values for a single or multiple strains
Compare results from multiple methods ,[object Object]
Compare a phenotype across ages for one or more strains
Compare phenotype values for a set of substrains

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