Open data and open access - A biomedical data- and text-mining perspective

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The document discusses open data and open access in biomedical research from a data and text mining perspective. It notes the large amount of biomedical data and text available, challenges of understanding what is known, and importance of public databases and open licensing to support open science. It also discusses using data mining of clinical records from millions of patients to discover new adverse drug reactions and safety issues at a scale not possible from traditional trials.

Science

Lars Juhl Jensen
Open data and open access
A biomedical data- and text-mining
perspective

Jensen et al., Nature Reviews Genetics, 2012

Jensen et al., Nature Communications, 2014

Eriksson et al., Drug Safety, 2014
Drug introduction Drug discontinuation
Adverse eventNegative modifier Indication Pre-existing
condition
Adverse drug reaction Possible
adverse drug reaction
Adverse event
ADR of
additional drug
Identification start

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