This document discusses disease systems biology and related research from the Jensen Lab. It mentions analyzing protein networks, cellular signaling, sequence motifs, functional associations, computational predictions versus experimental data, confidence scores, orthology-based transfer, and identifying functional modules. It also discusses literature mining over 22 million abstracts and 4 million articles to build a comprehensive lexicon. Additional topics covered include analyzing tissues, compartments, diseases using co-mentioning and medical data mining of electronic health records and structured versus unstructured data for patient stratification, comorbidity, disease trajectories, and pharmacovigilance.