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Drug Repositioning Informatics
Developing Information Analytics & Search 
Solutions To Identify, Evaluate and Exploit 
New Opportunities For Drug Repositioning




Nick Brown
Informatics Programme Manager
New Opportunities
Our Company
Healthcare For People

As one of the world’s leading pharmaceutical companies, our business is 
providing innovative, effective medicines that make a real difference to patients. 
We focus our skills and resources on six important areas of healthcare, which 
include some of the world’s most serious illnesses.




           Cardiovascular          Gastrointestinal            Neuroscience




      Respiratory & inflammation       Infection                  Cancer
New Opportunities
The Other Disease Areas...

New Opportunities is a fully virtualized R&D unit that brings 
medicines to patients in disease areas where AstraZeneca is 
not currently conducting research.
Our current interests are in ophthalmology, wound‐healing, 
bone disorders, dermatology, women’s health, critical care, 
auditory disorders and regenerative medicine.

We are always seeking New Opportunities by 
  In‐licensing promising late stage assets to strengthen our pipeline
  Out‐licensing and co‐development models for internal candidate drugs
  Testing and adding value to our compounds through in vivo and clinical models
  Forming partnerships with external companies with expertise in specific diseases
External Partnerships
Recent Success

In 2009, we signed a deal with Alcon, experts in ophthalmology and in 2011, we 
signed a deal with Galderma, experts in dermatology. Partnering with world‐
leaders is the most efficient and effective way to unlock the potential of our 
compounds in these rapidly evolving disease areas.
Drug Repositioning
Definitions...

Repositioning, Reprofiling, Repurposing, Recycling...


We simply look to systematically consider alternative disease indications for all 
of our drugs and compounds, from early discovery to late stage development 
compounds, even considering life cycle management opportunities.


We do this through the gathering of different types of information, informatic 
analyses, scientific testing and prioritizing our options for a considered portfolio. 


Today I will describe some of these approaches.
Structure-Based Repositioning
Predictive Modelling

We have experimented with a variety of in‐silico modelling approaches 
(Bayesian, QSAR, Random Forest) to identify novel indications for screening our 
early Discovery compound library based on structure alone.


                                                              positive



                                                              negative



We hope to start to use such approaches in earnest to develop new R&D 
programmes with a longer term approach to diseases of unmet patient needs. 
Always interested in hearing additional approaches that have the ability to 
profile entire compound libraries. 
Launched Drug Repositioning
Life-Cycle Management Indications

One of the easiest opportunities to reposition is with existing, launched drugs, 
leveraging literature, clinical and mechanistic information. 

▪ Xylocaine (lidocaine) – many literature and medical sources described the potential for 
  this anesthetic, reformulated for migraine. This has now been tested in clinical trials as 
  a nasal spray for migraine.

▪ Atacand (candesartan) and similar compounds have the potential to be useful in 
  hypertension, alcoholic liver disease and aortic valve stenosis. These are also 
  undergoing clinical testing.


Where compounds have been launched, there is a lot of information that can be 
gathered from conference and grants, as well as web‐sources and forums to 
provide possible clues to consider further new indications.
Mechanistic Repositioning
Building The Foundation

In 2008, we negotiated, licensed and indexed >50 million scientific abstracts. 
Our systems use these & aggregated competitive intelligence systems on the fly




        Identify                           Find                 Alerts & Trends           Capture Ideas
     Collaborators                     Repositioning              to Breaking                For Our
     & Companies                       Opportunities              Information             Prioritisation

                            SOLR                                           Web Services


       Clinical Trials        Publications         Patents    News

       Congress Data             Grants          PhD theses   PhD

                         Unstructured Scientific Abstracts                Structured Comp Intel



We then leverage tools like Pipeline Pilot to build prototypes rapidly 
Mechanistic Repositioning
Underlying Concept

We systematically process every disease against every mechanism, finding 
potential hotspots that we should investigate further.



    Potential                       Potential
    Disease terms                                                           Mechanism of Actions
                                    Mechanism of Actions 




                                                            Disease terms
                    Biological Rational
                Competitive Rational



Using a variety of statistical approaches, we can identify new opportunities for 
our existing compounds or in‐licensing opportunities for external compounds.
Asset Repositioning Matrix
Stitching Information Together

Using this approach, we have identified hundreds of opportunities that connect 
druggable target mechanisms to disease indications. e.g. Neglected Tropical Disease




Having evaluated some hits pre‐clinically , we have our first human study this year. 
As well as single hits, we also identifies themes for potential franchises, such as 
ophthalmology and dermatology, where we seek world leaders to partner with
Matrix Reloaded
Extending The Sources

As the system was developed to handle millions of datapoints, from different 
data slices, we have started to add additional data from a variety of sources

                          Biological Potential & Target Efficacy

                                Competitor Landscape & Patent Position
                                      Safety & Adverse Events Consideration

                                           Patient & Genetic Rationale

                                                Tissue & Cell Rational

Only in combination, can we utilize this information to have a prioritized 
view of our assets and those potential repositioning opportunities we 
should progress further to evaluation.
Web 2.0 Repositioning
Using The Power of People

As a small team, we are unable to triage every potential opportunity, but by 
building an intranet based approach, scientists from across AZ can curate 
potential hits as well as submit their own ideas in one system.


                                                                           Reject 
                                                                           hypothesis


                                                                           Second 
                                                                           Opinion

                                                                           Evaluate 
                                                                           Pre‐Clinically
 Submit New Idea




This also helps to actively consider repositioning opportunities from one disease 
area into another existing AZ disease area, as well as those that we consider in 
New Opportunities.
Influencing R&D Search
Accessing our internal content

Over the past 6 months, I have been working with a team in AstraZeneca (and 
external company) to develop new platforms for searching internal R&D content 
and surfacing it in bespoke business applications. 
By standardizing our internal AZ vocabularies and auto‐tagging our rich, internal 
document sources, we have been able to identify around 1700 files that contain 
potential new indications that have been hypothesized over the past 10 years.




We aim to increase access to this R&D content, through improved information 
policies and  knowledge management systems but also by driving it through 
demonstrating clear, unequivocal business benefits such as this. 
Repositioning By Function
Leveraging how our drugs work

Understanding mechanisms and targets is not sufficient. 
Working with our scientists, we have recognised that the best repositioning successes are 
done by truly understanding how the drugs operate. No target is involved !
For example                                                heart failure / angina


                                                           hypertension


                                                           Stroke / aneurysms
                               e.g. lowers blood 
      AZ compounds             pressure
                                                           retinopathy


                                                           nephropathy


                                                           dementia



We have interviewed over 100 scientists to collate information about our 
drugs systematically into a single location and biological process maps
Biological Process Mapping
Capturing AZ Knowledge

We capture information around where and how the drugs work, down to the 
level of the cell, tissue and pathophysiological changes leading to outcomes.
Consortium Model ?
We can’t do this alone...

Whilst we can map our own existing AZ development compounds and drugs, 
we are working with Thomson Reuters (GeneGO) to launch a new consortium


MetaMiner Mechanism of Action (MMMOA) consortium
     Commencing July 2011
     Mapping bioprocess maps for FDA approved drugs over 3 years
     Manually curated maps, supported by scientific evidence


Benefits ? We are aiming to use this in conjunction with internal approaches 
to facilitate our drug repositioning and drug combination initiatives
Interested ? Get in touch… Contact Nick Brown (AZ), Caroline Hellawell (AZ), 
or Rob Greenwood (Thomson Reuters)
New Opportunities - Virtual iMED
100% Externalisation

With no R&D of our own, New Opportunities always looks to consider the 
external world as its laboratory, working with leaders in any field.




We are always interested to work with people on repositioning systems, 
computational approaches, disease models, licensing compounds, 
collaborative development opportunities…
Understanding New Disease Areas
 Finding Key Opinion Leaders & Experts

 Of course, to rapidly understand new disease areas, we try to work with leading experts. 
 To find them, we built KOL Miner (with OpenQ) – a system that analyses the 50M 
 scientific documents on the fly and finds people & companies in seconds.




Top KOLs in GABA across the world.                     Top 10 KOLs working with leptocytes in GABA field.

 It also creates interaction maps and timeline views, that enable us to figure out who is 
 key, who are rising stars and who has the largest sphere of influence. This also allows us 
 to rapidly find companies to test our new hypotheses with.
Evaluating Our Hypotheses
Finding The Right CRO
As well as working with leading academic experts, we work with many CROs to test our
ideas pre‐clinically. We use a private version of the Assay Depot marketplace to find
services and screens. The private marketplace acts as a single source of information about
internal and external services, and can enable us to easily chat with new CROs about what
models they have, how much they cost and what parameters we are planning to evaluate.

Service marketplace and communication channel for 4000+ CROs




   The marketplace helps standardize information about in vivo models that have 
   previously been difficult to compare directly.
New Opportunities
Please come and talk to us !

Hopefully today I have provided a brief overview of how we use a virtual function in a 
pharmaceutical company to repositioning our portfolio and evaluate these.
If you would like to work together or want to discuss anything further please get in touch. 
nick.brown@astrazeneca.com




   Any Questions…
Acknowledgements
None of this possible without the help of

Ed Holbrook (AstraZeneca)          and some of our collaborators I can name
Mark Robertson (AstraZeneca)       Graham Cox (Tessella)
Caroline Hellawell (AstraZeneca)   Jerry Campbell (Tessella)
Johanna Sagemark (AstraZeneca)     Jamie Kincaid (Accelrys)
Jane Escott (AstraZeneca)          Alex Benn (Accelrys)
Marcus Bjäreland (AstraZeneca)     Julie Bryant (GeneGO)
Ian Barrett (AstraZeneca)          Svetlana Bureeva (GeneGO)
Amy McDonough (AstraZeneca)        Ruben Jimenez (OpenQ)
Graeme Wilkinson (AstraZeneca)     Otavio Freire (OpenQ)
Hitesh Sanganee (AstraZeneca)      Kevin Lustig (AssayDepot)
Elaine Anderson (AstraZeneca)      Corey Jacklin (AssayDepot)
Lisa Taylor (AstraZeneca)

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Nick Brown Drug Repositioning Informatics

  • 2. Our Company Healthcare For People As one of the world’s leading pharmaceutical companies, our business is  providing innovative, effective medicines that make a real difference to patients.  We focus our skills and resources on six important areas of healthcare, which  include some of the world’s most serious illnesses. Cardiovascular Gastrointestinal Neuroscience Respiratory & inflammation Infection Cancer
  • 3. New Opportunities The Other Disease Areas... New Opportunities is a fully virtualized R&D unit that brings  medicines to patients in disease areas where AstraZeneca is  not currently conducting research. Our current interests are in ophthalmology, wound‐healing,  bone disorders, dermatology, women’s health, critical care,  auditory disorders and regenerative medicine. We are always seeking New Opportunities by  In‐licensing promising late stage assets to strengthen our pipeline Out‐licensing and co‐development models for internal candidate drugs Testing and adding value to our compounds through in vivo and clinical models Forming partnerships with external companies with expertise in specific diseases
  • 6. Structure-Based Repositioning Predictive Modelling We have experimented with a variety of in‐silico modelling approaches  (Bayesian, QSAR, Random Forest) to identify novel indications for screening our  early Discovery compound library based on structure alone. positive negative We hope to start to use such approaches in earnest to develop new R&D  programmes with a longer term approach to diseases of unmet patient needs.  Always interested in hearing additional approaches that have the ability to  profile entire compound libraries. 
  • 7. Launched Drug Repositioning Life-Cycle Management Indications One of the easiest opportunities to reposition is with existing, launched drugs,  leveraging literature, clinical and mechanistic information.  ▪ Xylocaine (lidocaine) – many literature and medical sources described the potential for  this anesthetic, reformulated for migraine. This has now been tested in clinical trials as  a nasal spray for migraine. ▪ Atacand (candesartan) and similar compounds have the potential to be useful in  hypertension, alcoholic liver disease and aortic valve stenosis. These are also  undergoing clinical testing. Where compounds have been launched, there is a lot of information that can be  gathered from conference and grants, as well as web‐sources and forums to  provide possible clues to consider further new indications.
  • 8. Mechanistic Repositioning Building The Foundation In 2008, we negotiated, licensed and indexed >50 million scientific abstracts.  Our systems use these & aggregated competitive intelligence systems on the fly Identify Find Alerts & Trends Capture Ideas Collaborators Repositioning to Breaking For Our & Companies Opportunities Information Prioritisation SOLR Web Services Clinical Trials Publications Patents News Congress Data Grants PhD theses PhD Unstructured Scientific Abstracts Structured Comp Intel We then leverage tools like Pipeline Pilot to build prototypes rapidly 
  • 9. Mechanistic Repositioning Underlying Concept We systematically process every disease against every mechanism, finding  potential hotspots that we should investigate further. Potential  Potential Disease terms Mechanism of Actions Mechanism of Actions  Disease terms Biological Rational Competitive Rational Using a variety of statistical approaches, we can identify new opportunities for  our existing compounds or in‐licensing opportunities for external compounds.
  • 10. Asset Repositioning Matrix Stitching Information Together Using this approach, we have identified hundreds of opportunities that connect  druggable target mechanisms to disease indications. e.g. Neglected Tropical Disease Having evaluated some hits pre‐clinically , we have our first human study this year.  As well as single hits, we also identifies themes for potential franchises, such as  ophthalmology and dermatology, where we seek world leaders to partner with
  • 11. Matrix Reloaded Extending The Sources As the system was developed to handle millions of datapoints, from different  data slices, we have started to add additional data from a variety of sources Biological Potential & Target Efficacy Competitor Landscape & Patent Position Safety & Adverse Events Consideration Patient & Genetic Rationale Tissue & Cell Rational Only in combination, can we utilize this information to have a prioritized  view of our assets and those potential repositioning opportunities we  should progress further to evaluation.
  • 12. Web 2.0 Repositioning Using The Power of People As a small team, we are unable to triage every potential opportunity, but by  building an intranet based approach, scientists from across AZ can curate  potential hits as well as submit their own ideas in one system. Reject  hypothesis Second  Opinion Evaluate  Pre‐Clinically Submit New Idea This also helps to actively consider repositioning opportunities from one disease  area into another existing AZ disease area, as well as those that we consider in  New Opportunities.
  • 13. Influencing R&D Search Accessing our internal content Over the past 6 months, I have been working with a team in AstraZeneca (and  external company) to develop new platforms for searching internal R&D content  and surfacing it in bespoke business applications.  By standardizing our internal AZ vocabularies and auto‐tagging our rich, internal  document sources, we have been able to identify around 1700 files that contain  potential new indications that have been hypothesized over the past 10 years. We aim to increase access to this R&D content, through improved information  policies and  knowledge management systems but also by driving it through  demonstrating clear, unequivocal business benefits such as this. 
  • 14. Repositioning By Function Leveraging how our drugs work Understanding mechanisms and targets is not sufficient.  Working with our scientists, we have recognised that the best repositioning successes are  done by truly understanding how the drugs operate. No target is involved ! For example heart failure / angina hypertension Stroke / aneurysms e.g. lowers blood  AZ compounds pressure retinopathy nephropathy dementia We have interviewed over 100 scientists to collate information about our  drugs systematically into a single location and biological process maps
  • 15. Biological Process Mapping Capturing AZ Knowledge We capture information around where and how the drugs work, down to the  level of the cell, tissue and pathophysiological changes leading to outcomes.
  • 16. Consortium Model ? We can’t do this alone... Whilst we can map our own existing AZ development compounds and drugs,  we are working with Thomson Reuters (GeneGO) to launch a new consortium MetaMiner Mechanism of Action (MMMOA) consortium Commencing July 2011 Mapping bioprocess maps for FDA approved drugs over 3 years Manually curated maps, supported by scientific evidence Benefits ? We are aiming to use this in conjunction with internal approaches  to facilitate our drug repositioning and drug combination initiatives Interested ? Get in touch… Contact Nick Brown (AZ), Caroline Hellawell (AZ),  or Rob Greenwood (Thomson Reuters)
  • 17. New Opportunities - Virtual iMED 100% Externalisation With no R&D of our own, New Opportunities always looks to consider the  external world as its laboratory, working with leaders in any field. We are always interested to work with people on repositioning systems,  computational approaches, disease models, licensing compounds,  collaborative development opportunities…
  • 18. Understanding New Disease Areas Finding Key Opinion Leaders & Experts Of course, to rapidly understand new disease areas, we try to work with leading experts.  To find them, we built KOL Miner (with OpenQ) – a system that analyses the 50M  scientific documents on the fly and finds people & companies in seconds. Top KOLs in GABA across the world. Top 10 KOLs working with leptocytes in GABA field. It also creates interaction maps and timeline views, that enable us to figure out who is  key, who are rising stars and who has the largest sphere of influence. This also allows us  to rapidly find companies to test our new hypotheses with.
  • 19. Evaluating Our Hypotheses Finding The Right CRO As well as working with leading academic experts, we work with many CROs to test our ideas pre‐clinically. We use a private version of the Assay Depot marketplace to find services and screens. The private marketplace acts as a single source of information about internal and external services, and can enable us to easily chat with new CROs about what models they have, how much they cost and what parameters we are planning to evaluate. Service marketplace and communication channel for 4000+ CROs The marketplace helps standardize information about in vivo models that have  previously been difficult to compare directly.
  • 20. New Opportunities Please come and talk to us ! Hopefully today I have provided a brief overview of how we use a virtual function in a  pharmaceutical company to repositioning our portfolio and evaluate these. If you would like to work together or want to discuss anything further please get in touch.  nick.brown@astrazeneca.com Any Questions…
  • 21. Acknowledgements None of this possible without the help of Ed Holbrook (AstraZeneca) and some of our collaborators I can name Mark Robertson (AstraZeneca) Graham Cox (Tessella) Caroline Hellawell (AstraZeneca) Jerry Campbell (Tessella) Johanna Sagemark (AstraZeneca) Jamie Kincaid (Accelrys) Jane Escott (AstraZeneca) Alex Benn (Accelrys) Marcus Bjäreland (AstraZeneca) Julie Bryant (GeneGO) Ian Barrett (AstraZeneca) Svetlana Bureeva (GeneGO) Amy McDonough (AstraZeneca) Ruben Jimenez (OpenQ) Graeme Wilkinson (AstraZeneca) Otavio Freire (OpenQ) Hitesh Sanganee (AstraZeneca) Kevin Lustig (AssayDepot) Elaine Anderson (AstraZeneca) Corey Jacklin (AssayDepot) Lisa Taylor (AstraZeneca)