1. The document summarizes new insights into the metabolic pathways of the methylotrophic bacterium Methylobacterium extorquens AM1.
2. It was previously thought that the direct assimilation pathway dominated metabolism, but new evidence shows that flux through this pathway is insignificant and the long pathway is responsible for all carbon assimilation.
3. Formate dehydrogenase, which was thought to be unnecessary, plays a key role as there are actually four formate dehydrogenase enzymes essential for growth on methanol.
1. Water moves upwards through the xylem vessels and tracheids of plants via transpiration pull. As water is lost from the leaves through transpiration, tension is created in the water column that pulls water up from the roots.
2. Cohesion and adhesion forces between water molecules and vessel walls allow the water column to remain continuous despite the tension. Transpiration pull can exceed the cohesive strength of water.
3. The transpiration pull theory best explains the ascent of sap in plants over 130 meters tall and is supported by evidence like diurnal shrinkage and swelling of tree trunks.
Tratos Culturais: Aplicação de FungicidasGeagra UFG
A apresentação abrange os aspectos da cultura do milho com relação ao ataque de fungos. Foram abordados os principais danos causados, bem como os sintomas característicos de cada doença, os produtos que devem ser utilizados no combate dos fungos, o momento correto de aplicação dos fungicidas e os custos para se obter uma lavoura de qualidade e livre desses patógenos.
This document discusses transport of solutes across plant cell membranes. It describes three main types of transport proteins: ion channels that act as pores, carriers that bind and change conformation to transport solutes, and pumps that use ATP to actively transport ions against gradients. Specifically, it outlines proton pumps (H+-ATPase, H+-PPase) and calcium pumps (Ca2+-ATPase) that create electrochemical gradients, and how secondary active transport uses these gradients to symport or antiport other solutes.
Translocation is the transport of organic solutes like sugars from leaves (the source) to other plant parts (the sinks) through the phloem. Several experiments provide evidence that phloem is the pathway for translocation, including the structure of phloem, ringing experiments, chemical analysis showing high sugar concentrations in phloem sap, and the use of radioactive tracers. The pressure flow hypothesis proposes that solutes move passively through the pressurized phloem network in response to pressure gradients from sources to sinks.
Havia diferenças entre os sofistas e Sócrates. Os sofistas ensinavam retórica e oratória públicas para vencer debates, enquanto Sócrates ensinava filosofia para revelar a verdade, usando questionamento, ironia e maiêutica. Ele acreditava na existência da verdade objetiva, ao contrário do ceticismo dos sofistas.
Plants create their own food through the process of photosynthesis, making them autotrophs. Additionally, the process' end result is referred to as a photosynthate or photo-assimilate. In plants, the phloem is a conducting tissue that carries photosynthate (food) to every part of the plant. While storage or the point of use is referred to as the Sink, the source of production or manufacturing is referred to as the Source. The source and sink connection notion is explained in the slides. The mechanisms cover these and other crucial aspects of the topic.
AUXIN a morphogen in plant growth and developmentSudershan Mishra
the presentation encompasses auxin synthesis, conjugation, degradation, polar and lateral transport and signalling and how all of these together have a bearing on programming and design of the whole plan
movement of water from root to atmosphereAsif Khan
Water moves through soil, plants, and the atmosphere via three main mechanisms: bulk flow, diffusion, and osmotic flow. In soil, water moves through bulk flow from regions of high water potential to regions of low water potential in response to pressure gradients. In plants, transpiration pull and capillary action drive bulk flow of water through the xylem. Water then diffuses out of leaf mesophyll cells and across the leaf boundary layer before entering the atmosphere by diffusion and convection. Membranes regulate water movement via osmotic flow in response to solute concentration gradients. Stomatal control and the cohesion-tension mechanism facilitate long-distance water transport while minimizing water loss.
1. Water moves upwards through the xylem vessels and tracheids of plants via transpiration pull. As water is lost from the leaves through transpiration, tension is created in the water column that pulls water up from the roots.
2. Cohesion and adhesion forces between water molecules and vessel walls allow the water column to remain continuous despite the tension. Transpiration pull can exceed the cohesive strength of water.
3. The transpiration pull theory best explains the ascent of sap in plants over 130 meters tall and is supported by evidence like diurnal shrinkage and swelling of tree trunks.
Tratos Culturais: Aplicação de FungicidasGeagra UFG
A apresentação abrange os aspectos da cultura do milho com relação ao ataque de fungos. Foram abordados os principais danos causados, bem como os sintomas característicos de cada doença, os produtos que devem ser utilizados no combate dos fungos, o momento correto de aplicação dos fungicidas e os custos para se obter uma lavoura de qualidade e livre desses patógenos.
This document discusses transport of solutes across plant cell membranes. It describes three main types of transport proteins: ion channels that act as pores, carriers that bind and change conformation to transport solutes, and pumps that use ATP to actively transport ions against gradients. Specifically, it outlines proton pumps (H+-ATPase, H+-PPase) and calcium pumps (Ca2+-ATPase) that create electrochemical gradients, and how secondary active transport uses these gradients to symport or antiport other solutes.
Translocation is the transport of organic solutes like sugars from leaves (the source) to other plant parts (the sinks) through the phloem. Several experiments provide evidence that phloem is the pathway for translocation, including the structure of phloem, ringing experiments, chemical analysis showing high sugar concentrations in phloem sap, and the use of radioactive tracers. The pressure flow hypothesis proposes that solutes move passively through the pressurized phloem network in response to pressure gradients from sources to sinks.
Havia diferenças entre os sofistas e Sócrates. Os sofistas ensinavam retórica e oratória públicas para vencer debates, enquanto Sócrates ensinava filosofia para revelar a verdade, usando questionamento, ironia e maiêutica. Ele acreditava na existência da verdade objetiva, ao contrário do ceticismo dos sofistas.
Plants create their own food through the process of photosynthesis, making them autotrophs. Additionally, the process' end result is referred to as a photosynthate or photo-assimilate. In plants, the phloem is a conducting tissue that carries photosynthate (food) to every part of the plant. While storage or the point of use is referred to as the Sink, the source of production or manufacturing is referred to as the Source. The source and sink connection notion is explained in the slides. The mechanisms cover these and other crucial aspects of the topic.
AUXIN a morphogen in plant growth and developmentSudershan Mishra
the presentation encompasses auxin synthesis, conjugation, degradation, polar and lateral transport and signalling and how all of these together have a bearing on programming and design of the whole plan
movement of water from root to atmosphereAsif Khan
Water moves through soil, plants, and the atmosphere via three main mechanisms: bulk flow, diffusion, and osmotic flow. In soil, water moves through bulk flow from regions of high water potential to regions of low water potential in response to pressure gradients. In plants, transpiration pull and capillary action drive bulk flow of water through the xylem. Water then diffuses out of leaf mesophyll cells and across the leaf boundary layer before entering the atmosphere by diffusion and convection. Membranes regulate water movement via osmotic flow in response to solute concentration gradients. Stomatal control and the cohesion-tension mechanism facilitate long-distance water transport while minimizing water loss.
O documento discute o conceito de mito, comparando-o com a filosofia. Define mito como uma narrativa tradicional que busca explicar fenômenos naturais e origens do mundo de forma simbólica e não racional. A filosofia, por outro lado, busca explicações lógicas e coerentes através de discussão e argumentos. O documento também apresenta o mito de Prometeu e cita Fernando Pessoa sobre mitos.
MOLECULAR AND BIOCHEMICAL STEPS IN SYNTHESIS OF GIBBERELLINS IN PLANTSVaibhav Chavan
Gibberellins are plant hormones that regulate growth and development processes. They are synthesized through a multi-step pathway involving terpenoid precursors in plastids, modifications in the endoplasmic reticulum, and further reactions in the cytosol. The pathway can be divided into three stages: formation of the ent-kaurene precursor in plastids, oxidations to form GA12 and GA53 on the ER, and production of other GAs like GA1 from GA12 or GA53 in the cytosol. Environmental factors influence gibberellin biosynthesis, and understanding the molecular mechanisms of synthesis could allow control over plant growth processes.
Root is the part where plant interact with microbes. Microbes really plays an important role in the overall wellbeing of the crop. Here is some basics regarding root colonization
The seminar discusses senescence and regulation in plants. Senescence is the final stage of development for plants, where nutrients are recycled from leaves and stored for future growth or seeds. Regulation of protein synthesis plays a key role in determining cell proliferation and senescence. There are different types of senescence like overall, top, deciduous, and progressive senescence that affect different parts of plants. The sequence of senescence events in flowering plants includes roots, cotyledons, leaves, stems, fruits, flowers, and eventually the whole plant. Senescence processes are tightly controlled until death occurs.
O documento discute o fitonematóide da aceroleira, incluindo sua origem, importância econômica, características, sintomas causados, fatores que afetam seu desenvolvimento, diagnóstico e métodos de controle. O nematóide das galhas Meloidogyne spp. causa danos à aceroleira ao formar galhas nas raízes, reduzindo a absorção de nutrientes e a produção da planta. Seus principais métodos de controle incluem a utilização de mudas e solo livres de pragas, rotação de
The document summarizes the ABC model of flower development. It discusses (a) the transition from vegetative to reproductive phase controlled by genes like FT, LFY, and SOC1, (b) the formation of inflorescence meristems regulated by genes like WUS and STM that prevent stem cell differentiation, and (c) individual floral organ development governed by meristem identity, organ identity, and cadastral genes. The ABC model specifies floral organ identity through the combinatorial interactions of ABC genes like AP3, PI, AG, and AP2, and D class genes like FBP7 control ovule development. The ABC model is sufficient to convert meristems into flowers and applies broadly across flowering plants.
This document summarizes different mechanisms of floral evocation and flowering in plants. It discusses three types of flowering responses: autonomous, obligate, and facultative. Common seasonal cues include photoperiodism and vernalization. Flowering is regulated by microRNAs, circadian rhythms, photoperiod pathways, and genes such as FLC that promote or suppress flowering under different environmental conditions. Vernalization gradually represses FLC expression leading to an epigenetic switch from a flowering-suppressive to flowering-permissive state. COOLAIR non-coding RNA is involved in vernalization by facilitating histone modifications that stabilize FLC repression.
Plant responses to hormones and environmental stimuli can include developmental transitions like dormancy, germination, and flowering. Hormones interact with signal transduction pathways and influence gene expression to regulate these processes. The document discusses several plant hormones and how they regulate growth and development, including auxins, which promote phototropism, gravitropism, and cell elongation, and gibberellins, which promote germination and stem elongation. Environmental stimuli like light can also influence these processes through interactions with photoreceptors like phytochrome.
Mechanism of uptake and transport of nutrient ions in plantsZuby Gohar Ansari
Nutrient ions are taken up by plant roots and transported throughout the plant. There are two primary methods of uptake: passive absorption, which does not require energy, and active transport, which transports ions against a concentration gradient by expending metabolic energy. Passive absorption occurs through mechanisms like mass flow, ion exchange, and diffusion. Active transport uses carrier proteins and ion pumps in the cell membrane to transport ions against their gradient, powered by ATP hydrolysis. Ions move within plant tissues through both symplastic and apoplastic pathways.
Sulfur assimilation in plants is a multistep process where sulfate is converted into organic sulfur compounds like cysteine. Sulfate is first activated to form APS and then reduced to sulfite and sulfide with the help of glutathione and ferredoxin. Sulfide then reacts with O-acetylserine to form cysteine. Cysteine can then be used to synthesize methionine and the antioxidant glutathione. Sulfur assimilation requires energy and occurs primarily in shoots, though some may occur in roots. Sulfur containing compounds play important roles in plant structure, function and stress resistance.
1) O documento discute o conceito e benefícios dos sistemas de Integração Lavoura-Pecuária-Floresta (iLPF).
2) Esses sistemas permitem a integração de atividades agrícolas, pecuárias e florestais na mesma área de forma sustentável, buscando sinergias entre os componentes.
3) Estimativas indicam que os sistemas iLPF podem aumentar a produção de carne em 62%, grãos em 40% e madeira em 185% em relação aos sistemas convencionais
The document discusses aquaporins, which are integral membrane proteins that facilitate the transport of water and small molecules across biological membranes in plants. It covers the classification of aquaporins into different subgroups based on their substrate specificity and intracellular locations. The structure and regulation of aquaporins is described. Aquaporins play important roles in plant water transport, nutrient acquisition, and response to environmental stresses. Research findings demonstrate the involvement of specific aquaporins in transporting molecules like hydrogen peroxide and their regulation through phosphorylation.
Este documento fornece uma introdução à ordem Orthoptera, incluindo sua classificação taxonômica, morfologia externa, tipos de metamorfose e importância econômica. A ordem é dividida nas subordens Caelifera, que inclui gafanhotos e taquarinhas, e Ensifera, que inclui esperanças, grilos e paquinhas. Algumas espécies de Orthoptera podem ser pragas agrícolas significativas, atacando plantações.
Ino impacto das pragas exoticas no ambienteedsondecristo3
Pragas exóticas podem causar grandes danos ao meio ambiente e à agricultura quando introduzidas em novos habitats. Essas pragas se adaptam facilmente, se reproduzem rapidamente e competem com espécies nativas por recursos. O controle biológico, usando predadores, parasitoides e patógenos, é uma estratégia importante para controlar o impacto das pragas exóticas de forma ambientalmente sustentável.
Mitos são histórias contadas de geração em geração, usadas para explicar os fenômenos da natureza, as origens do mundo e do ser humano, a origem dos males, entre outros temas.
Os mitos explicavam fatos que a ciência ainda não havia explicado, de maneira simbólica e fantasiosa, comentando sobre personagens sobrenaturais, deuses e heróis. Eles constituem uma forma de conhecimento não racional sobre o mundo e os seres.
Por Bruno Carrasco, psicoterapeuta existencial.
www.ex-isto.com
www.fb.com/existocom
www.youtube.com/existo
www.instagram.com/existocom
2019
This document discusses disease forecasting models that use weather data to predict outbreaks. It provides examples of models for rice blast, potato late blight, wheat yellow rust, and more. The potato late blight model for India, JHULSACAST, is specifically discussed. Disease forecasting is useful for giving advance warning to apply protective chemicals before infection starts and help control economically important crop diseases. Both empirical and fundamental forecasting systems are covered, along with their components and requirements for developing useful forecasting.
O documento discute o micronutriente cobre, incluindo suas funções nas plantas, dinâmica no solo, fatores que afetam sua disponibilidade, fontes e formas de aplicação. O cobre é essencial para enzimas e processos como fotossíntese, e sua disponibilidade é afetada pelo pH, matéria orgânica, textura e balanço de nutrientes no solo.
Chapter_ 3 Plant pathogenic Bacteria _identification and classification.pptDawitGetahun6
Identification and classification of plant pathogenic bacteria involves observation of symptoms, isolation of the pathogen, characterization through tests, and fulfilling Koch's postulates. A diagnosis requires field observation, examination of diseased tissues, isolation, characterization, and pathogenicity testing. Bacteria are identified using their visible characteristics, physiological properties, serological reactions, and ability to cause disease in plants. Classification is based on Gram staining, biochemical tests, host specificity, and comparison to known genera. The concept of bacterial species and pathovars helps classify plant pathogenic bacteria.
This document provides an overview of arterial blood gas analysis and acid-base balance. It discusses the importance of ABG analysis in assessing oxygenation, ventilation, and acid-base status. The key aspects of acid-base balance that are covered include the Henderson-Hasselbalch equation, buffers like bicarbonate, and the roles of the lungs, kidneys, and brain in maintaining homeostasis. Compensation in response to primary respiratory or metabolic acid-base disorders is explained through formulas for expected changes in pCO2 and bicarbonate levels.
O documento discute o conceito de mito, comparando-o com a filosofia. Define mito como uma narrativa tradicional que busca explicar fenômenos naturais e origens do mundo de forma simbólica e não racional. A filosofia, por outro lado, busca explicações lógicas e coerentes através de discussão e argumentos. O documento também apresenta o mito de Prometeu e cita Fernando Pessoa sobre mitos.
MOLECULAR AND BIOCHEMICAL STEPS IN SYNTHESIS OF GIBBERELLINS IN PLANTSVaibhav Chavan
Gibberellins are plant hormones that regulate growth and development processes. They are synthesized through a multi-step pathway involving terpenoid precursors in plastids, modifications in the endoplasmic reticulum, and further reactions in the cytosol. The pathway can be divided into three stages: formation of the ent-kaurene precursor in plastids, oxidations to form GA12 and GA53 on the ER, and production of other GAs like GA1 from GA12 or GA53 in the cytosol. Environmental factors influence gibberellin biosynthesis, and understanding the molecular mechanisms of synthesis could allow control over plant growth processes.
Root is the part where plant interact with microbes. Microbes really plays an important role in the overall wellbeing of the crop. Here is some basics regarding root colonization
The seminar discusses senescence and regulation in plants. Senescence is the final stage of development for plants, where nutrients are recycled from leaves and stored for future growth or seeds. Regulation of protein synthesis plays a key role in determining cell proliferation and senescence. There are different types of senescence like overall, top, deciduous, and progressive senescence that affect different parts of plants. The sequence of senescence events in flowering plants includes roots, cotyledons, leaves, stems, fruits, flowers, and eventually the whole plant. Senescence processes are tightly controlled until death occurs.
O documento discute o fitonematóide da aceroleira, incluindo sua origem, importância econômica, características, sintomas causados, fatores que afetam seu desenvolvimento, diagnóstico e métodos de controle. O nematóide das galhas Meloidogyne spp. causa danos à aceroleira ao formar galhas nas raízes, reduzindo a absorção de nutrientes e a produção da planta. Seus principais métodos de controle incluem a utilização de mudas e solo livres de pragas, rotação de
The document summarizes the ABC model of flower development. It discusses (a) the transition from vegetative to reproductive phase controlled by genes like FT, LFY, and SOC1, (b) the formation of inflorescence meristems regulated by genes like WUS and STM that prevent stem cell differentiation, and (c) individual floral organ development governed by meristem identity, organ identity, and cadastral genes. The ABC model specifies floral organ identity through the combinatorial interactions of ABC genes like AP3, PI, AG, and AP2, and D class genes like FBP7 control ovule development. The ABC model is sufficient to convert meristems into flowers and applies broadly across flowering plants.
This document summarizes different mechanisms of floral evocation and flowering in plants. It discusses three types of flowering responses: autonomous, obligate, and facultative. Common seasonal cues include photoperiodism and vernalization. Flowering is regulated by microRNAs, circadian rhythms, photoperiod pathways, and genes such as FLC that promote or suppress flowering under different environmental conditions. Vernalization gradually represses FLC expression leading to an epigenetic switch from a flowering-suppressive to flowering-permissive state. COOLAIR non-coding RNA is involved in vernalization by facilitating histone modifications that stabilize FLC repression.
Plant responses to hormones and environmental stimuli can include developmental transitions like dormancy, germination, and flowering. Hormones interact with signal transduction pathways and influence gene expression to regulate these processes. The document discusses several plant hormones and how they regulate growth and development, including auxins, which promote phototropism, gravitropism, and cell elongation, and gibberellins, which promote germination and stem elongation. Environmental stimuli like light can also influence these processes through interactions with photoreceptors like phytochrome.
Mechanism of uptake and transport of nutrient ions in plantsZuby Gohar Ansari
Nutrient ions are taken up by plant roots and transported throughout the plant. There are two primary methods of uptake: passive absorption, which does not require energy, and active transport, which transports ions against a concentration gradient by expending metabolic energy. Passive absorption occurs through mechanisms like mass flow, ion exchange, and diffusion. Active transport uses carrier proteins and ion pumps in the cell membrane to transport ions against their gradient, powered by ATP hydrolysis. Ions move within plant tissues through both symplastic and apoplastic pathways.
Sulfur assimilation in plants is a multistep process where sulfate is converted into organic sulfur compounds like cysteine. Sulfate is first activated to form APS and then reduced to sulfite and sulfide with the help of glutathione and ferredoxin. Sulfide then reacts with O-acetylserine to form cysteine. Cysteine can then be used to synthesize methionine and the antioxidant glutathione. Sulfur assimilation requires energy and occurs primarily in shoots, though some may occur in roots. Sulfur containing compounds play important roles in plant structure, function and stress resistance.
1) O documento discute o conceito e benefícios dos sistemas de Integração Lavoura-Pecuária-Floresta (iLPF).
2) Esses sistemas permitem a integração de atividades agrícolas, pecuárias e florestais na mesma área de forma sustentável, buscando sinergias entre os componentes.
3) Estimativas indicam que os sistemas iLPF podem aumentar a produção de carne em 62%, grãos em 40% e madeira em 185% em relação aos sistemas convencionais
The document discusses aquaporins, which are integral membrane proteins that facilitate the transport of water and small molecules across biological membranes in plants. It covers the classification of aquaporins into different subgroups based on their substrate specificity and intracellular locations. The structure and regulation of aquaporins is described. Aquaporins play important roles in plant water transport, nutrient acquisition, and response to environmental stresses. Research findings demonstrate the involvement of specific aquaporins in transporting molecules like hydrogen peroxide and their regulation through phosphorylation.
Este documento fornece uma introdução à ordem Orthoptera, incluindo sua classificação taxonômica, morfologia externa, tipos de metamorfose e importância econômica. A ordem é dividida nas subordens Caelifera, que inclui gafanhotos e taquarinhas, e Ensifera, que inclui esperanças, grilos e paquinhas. Algumas espécies de Orthoptera podem ser pragas agrícolas significativas, atacando plantações.
Ino impacto das pragas exoticas no ambienteedsondecristo3
Pragas exóticas podem causar grandes danos ao meio ambiente e à agricultura quando introduzidas em novos habitats. Essas pragas se adaptam facilmente, se reproduzem rapidamente e competem com espécies nativas por recursos. O controle biológico, usando predadores, parasitoides e patógenos, é uma estratégia importante para controlar o impacto das pragas exóticas de forma ambientalmente sustentável.
Mitos são histórias contadas de geração em geração, usadas para explicar os fenômenos da natureza, as origens do mundo e do ser humano, a origem dos males, entre outros temas.
Os mitos explicavam fatos que a ciência ainda não havia explicado, de maneira simbólica e fantasiosa, comentando sobre personagens sobrenaturais, deuses e heróis. Eles constituem uma forma de conhecimento não racional sobre o mundo e os seres.
Por Bruno Carrasco, psicoterapeuta existencial.
www.ex-isto.com
www.fb.com/existocom
www.youtube.com/existo
www.instagram.com/existocom
2019
This document discusses disease forecasting models that use weather data to predict outbreaks. It provides examples of models for rice blast, potato late blight, wheat yellow rust, and more. The potato late blight model for India, JHULSACAST, is specifically discussed. Disease forecasting is useful for giving advance warning to apply protective chemicals before infection starts and help control economically important crop diseases. Both empirical and fundamental forecasting systems are covered, along with their components and requirements for developing useful forecasting.
O documento discute o micronutriente cobre, incluindo suas funções nas plantas, dinâmica no solo, fatores que afetam sua disponibilidade, fontes e formas de aplicação. O cobre é essencial para enzimas e processos como fotossíntese, e sua disponibilidade é afetada pelo pH, matéria orgânica, textura e balanço de nutrientes no solo.
Chapter_ 3 Plant pathogenic Bacteria _identification and classification.pptDawitGetahun6
Identification and classification of plant pathogenic bacteria involves observation of symptoms, isolation of the pathogen, characterization through tests, and fulfilling Koch's postulates. A diagnosis requires field observation, examination of diseased tissues, isolation, characterization, and pathogenicity testing. Bacteria are identified using their visible characteristics, physiological properties, serological reactions, and ability to cause disease in plants. Classification is based on Gram staining, biochemical tests, host specificity, and comparison to known genera. The concept of bacterial species and pathovars helps classify plant pathogenic bacteria.
This document provides an overview of arterial blood gas analysis and acid-base balance. It discusses the importance of ABG analysis in assessing oxygenation, ventilation, and acid-base status. The key aspects of acid-base balance that are covered include the Henderson-Hasselbalch equation, buffers like bicarbonate, and the roles of the lungs, kidneys, and brain in maintaining homeostasis. Compensation in response to primary respiratory or metabolic acid-base disorders is explained through formulas for expected changes in pCO2 and bicarbonate levels.
Alcohol consumption as a way of life: the metabolism of methylotrophic bacteriaGreg Crowther
Methylotrophs are bacteria that can use compounds containing just carbon and hydrogen, such as methane, methanol, and methylamines, as their sole source of carbon and energy. They are important for carbon cycling, bioremediation, and potential biocatalysis applications. Methylotrophs metabolize these C1 compounds into formaldehyde and then further oxidize or assimilate formaldehyde into cellular biomass through pathways like the serine cycle or RuMP cycle. Engineering methylotrophs for industrial applications requires understanding their native metabolic pathways.
This report summarizes research on the transport protein MhpT in E. coli K-12 that transports 3-hydroxyphenylpropionate (3-HPP). Key findings include:
1) E. coli K-12 can grow on 3-HPP as the sole carbon source.
2) MhpT is predicted to be a transmembrane protein and localized to the membrane.
3) Knockout mutants of mhpT were constructed and unable to grow on 3-HPP.
4) Vectors were constructed to express MhpT and complement the mutant strain.
Buffers in the body resist changes in pH and maintain it within a narrow range. The major buffer systems are bicarbonate, phosphate, and proteins. Bicarbonate buffers work by absorbing excess hydrogen ions in the blood and tissues. The kidneys and lungs work together to control bicarbonate and carbon dioxide levels to regulate pH. When an acid is added, buffers prevent a large change in pH by neutralizing the hydrogen ions.
The document discusses removal of nitrogen and phosphorus from wastewater. It describes biological and chemical processes for nitrogen removal through nitrification, denitrification, and ammonia stripping. For phosphorus removal, it discusses the biological process where phosphorus accumulating organisms take up phosphate under aerobic conditions and release it under anaerobic conditions. The Ludzack-Ettinger and Modified Ludzack-Ettinger processes are presented for nitrogen removal, while the University of Cape Town (UCT) process is highlighted for combined nitrogen and phosphorus removal.
This document provides an introduction to secondary metabolism and the biosynthesis of natural products. It defines primary and secondary metabolism, and describes how secondary metabolites are derived from primary metabolic intermediates like acetyl-CoA, mevalonic acid, and the amino acids phenylalanine, tyrosine, tryptophan, ornithine and lysine. The document also discusses the classification of secondary metabolites, pathways of biosynthesis, evolution of secondary metabolism in plants, and strategies for studying secondary metabolism.
The document summarizes key concepts about energy transformations that occur in the human body through respiration and oxidative phosphorylation. Chemical energy from nutrients is converted to ATP through substrate-level phosphorylation and oxidative phosphorylation. Oxidative phosphorylation uses the electron transport chain in the mitochondria to generate a proton gradient across the inner mitochondrial membrane, which drives ATP synthesis from ADP and inorganic phosphate.
4. Renal Block-Acid Base Balance-for Medical students.pptxRajendra Dev Bhatt
Acid–Base balance (also known as pH HOMEOSTASIS ) : one of the essential functions of the body, it is concerned with the precise regulation of free (unbound) hydrogen ion concentration in body fluids.
1. Buffer systems in the body provide an immediate response to fluctuations in pH through chemical buffers like phosphate, protein, and bicarbonate systems. The bicarbonate buffer system predominates in extracellular fluid and its concentration can be regulated by respiratory and renal systems.
2. The respiratory system responds to changes in pH by altering breathing rate - hyperventilating in response to acidosis and hypoventilating in response to alkalosis. This regulates the exhalation of carbon dioxide to bring pH back toward normal.
3. The renal system compensates for acid-base imbalances over 24 hours through retaining or excreting bicarbonate and hydrogen ions as needed. It secretes hydrogen
This thesis studied the metabolic pathways altered in Pseudomonas fluorescens Pf-5 due to hexavalent chromium stress using NMR-based metabolomics. P. fluorescens was exposed to 50 ppm of chromium for 6 and 24 hours. Metabolite extracts were analyzed using NMR and principal component analysis showed distinct metabolic profiles between control and stressed cells. Further analysis identified significant metabolites and probable pathways impacted by chromium stress.
This document describes a new method for quantifying poly(3-hydroxybutyrate) (PHB) in microbial cells using headspace solid-phase microextraction (SPME) coupled with gas chromatography. The method involves either methanolyzing or hydrolyzing PHB in samples to form methyl 3-hydroxybutyrate (Me-3-HB) or crotonic acid, respectively. These products are then extracted using SPME and analyzed by gas chromatography. The new SPME-based methods provide accurate results, are easier to perform than existing methods, and avoid use of hazardous chlorinated solvents. The document compares the new methods to the commonly used methanolysis/chloroform method and finds excellent agreement between all
This document provides an overview of acid-base disorders and hydrogen ion homeostasis in the body. It discusses normal hydrogen ion concentrations in extracellular fluid, lysosomes, urine and gastric acid. Buffering systems that help regulate hydrogen ion levels like the bicarbonate buffering system are also examined. Various acid-base disorders like metabolic acidosis, respiratory acidosis, and their causes and compensatory mechanisms are summarized as well.
This document discusses the electron transport chain (ETC) in mitochondria. It begins by explaining how the ETC uses carriers like coenzyme Q, cytochromes, and copper centers to shuttle electrons down the chain from substrates to oxygen. This generates a proton gradient that is used by ATP synthase to make ATP. It then describes each complex of the ETC in detail and how inhibitors can be used to determine the order of carriers. The document also discusses how the Q cycle functions in complex III and how oxygen consumption can be measured to study electron transport. It ends by explaining how tightly coupled electron transport is to ATP synthesis.
This document discusses the electron transport chain (ETC) in mitochondria. It begins by explaining how the ETC uses redox reactions and carriers like coenzyme Q, cytochromes, and copper centers to establish a proton gradient across the inner mitochondrial membrane. Complexes I, III, and IV of the ETC pump protons from the matrix to the intermembrane space. This proton gradient is then used by ATP synthase to make ATP via oxidative phosphorylation. The document also discusses how oxygen consumption can be measured to study electron transport and how tightly coupled this is to ATP synthesis.
This document discusses the electron transport chain (ETC) in mitochondria. It begins by explaining how the ETC uses carriers like coenzyme Q, cytochromes, and copper centers to shuttle electrons down the chain from substrates to oxygen. This generates a proton gradient that is used by ATP synthase to make ATP. It then describes each complex of the ETC in detail and how inhibitors can be used to determine the order of carriers. The document concludes by discussing how oxygen consumption can be measured to study electron transport and how tightly coupled this process is to ATP synthesis.
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1. New insights into the one-carbon metabolic network of Methylobacterium extorquens AM1 Greg Crowther Dept. of Chemical Engineering University of Washington Image: Dennis Kunkel Microscopy, Inc. HCOO - CH 2 =H 4 F Serine Cycle CO 2 CH 2 =H 4 MPT H 4 MPT CH 3 OH HCHO H 4 F Biomass
2. The “Central Dogma” of Biology DNA RNA Proteins substrates products microarrays proteomics, enzyme activity assays flux rates genomics metabolomics
3. My primary interest: metabolic fluxes DNA RNA Proteins substrates products flux rates
4. Clover leaf print showing Methylobacterium strains. Photo by Amy Springer. Methylotrophic metabolism • “ methyl” = -CH 3 , “troph” = growth • methylotrophy = growth on one-carbon compounds such as methanol (CH 3 OH ) - some methylotrophs can also grow on multicarbon compounds such as succinate (C 4 H 4 O 4 2- ) Dissimilation C 3 Assimilation C = O H H C - O H H H H CO 2 Biomass ATP NAD(P)H
5. • Carbon cycling Methane, a greenhouse gas, is consumed by some methylotrophs. • Bioremediation Methylotrophs detoxify many nasty compounds (e.g., chloride-containing organics). • Biocatalysis Genetic engineering enables synthesis of useful chemicals (e.g., plastics) from CH 3 OH. Images: Marina Kalyuzhnaya; appa.asso.fr; ouraycolorado.com Why is methylotrophy important? CO 2 CH 4
6.
7. M ethylotrophs are somewhat widespread in domain Bacteria… Figure: Hugenholtz et al., J Bacteriol 180 : 4765, 1998 … but M. extorquens AM1 is the best-studied species • 100 + genes for one-carbon metabolism are characterized • genome is sequenced • we think we know all of the major metabolic pathways M. extorquens AM1: a model methylotroph
8. • pink, rod-shaped -proteobacterium • natural habitat: surface of leaves demethylation of pectin produces methanol, which is released through stomata Meet Methylobacterium extorquens AM1 Clover leaf print showing Methylobacterium strains. Photo by Amy Springer.
9. Metabolic fluxes in M. extorquens AM1 HCOO - CH 2 =H 4 F Serine Cycle CO 2 CH 2 =H 4 MPT H 4 MPT CH 3 OH HCHO H 4 F Biomass
10. Dissimilation (CO 2 production) HCOO - CH 2 =H 4 F Serine Cycle CO 2 CH 2 =H 4 MPT H 4 MPT CH 3 OH HCHO H 4 F Biomass
11. Direct assimilation pathway (Biomass production) HCOO - CH 2 =H 4 F Serine Cycle CO 2 CH 2 =H 4 MPT H 4 MPT CH 3 OH HCHO H 4 F Biomass
12. Long assimilation pathway (Biomass production) HCOO - CH 2 =H 4 F Serine Cycle CO 2 CH 2 =H 4 MPT H 4 MPT CH 3 OH HCHO H 4 F Biomass
13. Metabolic fluxes in M. extorquens AM1: our view as of 2005 1. The direct assimilation pathway dominates in cells growing on CH 3 OH. 2. HCHO is the key branch point (Biomass vs. CO 2 ). 3. Formate dehydrogenase (FDH) may not be important? HCOO - CH 2 =H 4 F Serine Cycle CO 2 CH 2 =H 4 MPT H 4 MPT CH 3 OH HCHO H 4 F Biomass
14. Metabolic fluxes in M. extorquens AM1: our view as of 2005 1. The direct assimilation pathway dominates in cells growing on CH 3 OH. 2. HCHO is the key branch point (Biomass vs. CO 2 ). 3. Formate dehydrogenase (FDH) may not be important? HCOO - CH 2 =H 4 F Serine Cycle CO 2 CH 2 =H 4 MPT H 4 MPT CH 3 OH HCHO H 4 F Biomass
15. Metabolic fluxes in M. extorquens AM1: our view as of 2005 1. The direct assimilation pathway dominates in cells growing on CH 3 OH. 2. HCHO is the key branch point (Biomass vs. CO 2 ). 3. Formate dehydrogenase (FDH) may not be important? HCOO - CH 2 =H 4 F Serine Cycle CO 2 CH 2 =H 4 MPT H 4 MPT CH 3 OH HCHO H 4 F Biomass FDH
16. The rest of this talk: new insights, 2006-2007 1. The direct assimilation pathway: not important! HCOO - CH 2 =H 4 F Serine Cycle CO 2 CH 2 =H 4 MPT H 4 MPT CH 3 OH HCHO H 4 F Biomass FDH 2. Formate dehydrogenase: very important after all!
17. The direct assimilation pathway Evidence for this pathway: deuterium assay (Marx et al., PLoS 3 :e16, 2005) GC-MS extract, derivatize +2 Serine ( D 2 ) +1 Serine ( D ) D COO - C D 2 =H 4 F CO 2 C D 2 =H 4 MPT H 4 MPT C D 3 O D D C D O H 4 F C D H=H 4 F 90% + of serine is +2 in CH 3 OH-grown cells, so the direct pathway appears dominant.
18. Potential problem with the deuterium assay If NADPH pool gets contaminated with deuterium, flux through the long pathway will be “counted” as flux through the direct pathway. GC-MS extract, derivatize +2 Serine ( D 2 ) +2 Serine ( D 2 ) D COO - C D 2 =H 4 F CO 2 C D 2 =H 4 MPT H 4 MPT C D 3 O D D C D O H 4 F C D 2 =H 4 F NADP D
19. If NADPH pool gets contaminated with deuterium, the +2/+1 ratio should increase as incubation time increases (and more deuterium enters the pool). Conclusion : contamination does occur and might be a problem. Testing for NADPH contamination HCOO - CH 2 =H 4 F Serine Cycle CO 2 CH 2 =H 4 MPT H 4 MPT CH 3 OH HCHO H 4 F Biomass
20. Other reasons to question the direct pathway 1. If we knock out an enzyme in the long pathway, the cells can’t grow on CH 3 OH. Why can’t they just use the direct pathway? HCOO - CH 2 =H 4 F Serine Cycle CO 2 CH 2 =H 4 MPT H 4 MPT CH 3 OH HCHO H 4 F Biomass X
21. Other reasons to question the direct pathway 2. We can’t find an enzyme that catalyzes HCHO + H 4 F. • Vorholt et al. ( J Bacteriol 2000): cell extracts don’t enhance reaction rate • My data ( J Bacteriol 2005): fae2 and fae3 , the genes most likely to encode the enzyme (if it exists), can be knocked out without slowing growth on CH 3 OH HCOO - CH 2 =H 4 F Serine Cycle CO 2 CH 2 =H 4 MPT H 4 MPT CH 3 OH HCHO H 4 F Biomass
22. Other reasons to question the direct pathway 3. The nonenzymatic rate constant for HCHO + H 4 F is much lower than the deuterium and 14 C assay data would suggest. Measure 14 C-CO 2 Add 14 C-CH 3 OH Measure 14 C-Biomass HCOO - CH 2 =H 4 F Serine Cycle CH 2 =H 4 MPT H 4 MPT HCHO H 4 F
23. Estimates of direct pathway flux Direct pathway flux estimated from 14 C-biomass and deuterium assays = (total flux) * (direct flux / total flux) = 0.3 mM/s 14 C assay deuterium assay Is the rate constant for HCHO + H 4 F high enough to achieve this flux? HCOO - CH 2 =H 4 F Serine Cycle CO 2 CH 2 =H 4 MPT H 4 MPT CH 3 OH HCHO H 4 F Biomass
24. rate = V 6 *[H 4 F]*[HCHO] • V 6 < 0.08 mM -1 s -1 • [H 4 F] < 0.15 mM (Vorholt et al. 1998) • [HCHO] < 1 mM rate = (0.08 mM -1 s -1 )*(0.1 mM)*(0.5 mM) = 0.004 mM/s << 0.3 mM/s Conclusion : the deuterium assay may greatly overestimate the biomass flux coming from the direct pathway. Estimates of direct pathway flux HCOO - CH 2 =H 4 F Serine Cycle CO 2 CH 2 =H 4 MPT H 4 MPT CH 3 OH HCHO H 4 F Biomass
25. Testing the direct pathway by studying a long-pathway mutant Conclusion : Flux through the direct pathway is insignificant. If the direct pathway is “real”: • deuterium assay should detect +2 serine • 14 C assay should detect biomass flux … NO! … NO! HCOO - CH 2 =H 4 F Serine Cycle CO 2 CH 2 =H 4 MPT H 4 MPT CH 3 OH HCHO H 4 F Biomass X
26. Can the long pathway handle the entire CH 3 OH flux? Enzyme activities from literature (converted to mM/s): 1. MDH 1.5 2. Fae 5 3. MtdA/MtdB 10-28 4. Mch 11 5. Fhc 0.2-1.1 Preliminary conclusion : Enzyme activities appear sufficient for handling all CH 3 OH. This is a question for kinetic modeling (in progress). Maximum total CH 3 OH intake = 1.4 mM/s 1 2 3 4 5 HCOO - CH 2 =H 4 F Serine Cycle CO 2 CH 2 =H 4 MPT H 4 MPT CH 3 OH HCHO H 4 F Biomass
27. Conclusion on the direct pathway Flux through the direct assimilation pathway is insignificant. Key supporting evidence: • mutations in long pathway prevent growth on CH 3 OH • no detectable enzyme activity • rate constant for HCHO + H 4 F is very small • no +2 serine in long-pathway mutant (deuterium assay) • no biomass flux in long-pathway mutant ( 14 C assay) HCOO - CH 2 =H 4 F Serine Cycle CO 2 CH 2 =H 4 MPT H 4 MPT CH 3 OH HCHO H 4 F Biomass
28. Formate dehydrogenase (FDH) Background : Chistoserdova et al. ( J Bacteriol 186 : 22, 2004) studied three FDH genes, each of which was shown to be functional in vivo. HCOO - CH 2 =H 4 F Serine Cycle CO 2 CH 2 =H 4 MPT H 4 MPT CH 3 OH HCHO H 4 F Biomass FDH 1-3
29. Formate dehydrogenase (FDH) Weird findings for the triple mutant: • It still grows on CH 3 OH! • CO 2 production seems unimpaired! Possible interpretations: • There is at least one more FDH. • CO 2 is produced “downstream” of the one-carbon network. HCOO - CH 2 =H 4 F Serine Cycle CO 2 CH 2 =H 4 MPT H 4 MPT CH 3 OH HCHO H 4 F Biomass FDH 1-3 X
30. A fourth formate dehydrogenase! A gene with sequence homology to other FDHs is upregulated in the triple mutant (E. Skovran’s microarray analysis). This gene was knocked out along with the other three. The quadruple mutant cannot grow on CH 3 OH (L. Chistoserdova), suggesting that there are 4 (and only 4) FDHs. What do the flux data show? HCOO - CH 2 =H 4 F Serine Cycle CO 2 CH 2 =H 4 MPT H 4 MPT CH 3 OH HCHO H 4 F Biomass
31. My 14 C-CO 2 flux data CO 2 production is similar in the wild-type and triple mutant, but is virtually eliminated in the quadruple mutant. -> Consistent with the hypothesis that there are 4 and only 4 FDHs. -> Contradicts the hypothesis that there is significant CO 2 production “downstream” of the one-carbon network. HCOO - CH 2 =H 4 F Serine Cycle CO 2 CH 2 =H 4 MPT H 4 MPT CH 3 OH HCHO H 4 F Biomass
32. HCOO - consumption data (J. Vorholt) Capacity to consume HCOO - (as measured by 13 C NMR spectroscopy), in nmol/(mg*min) Wild-type AM1 18.5 Quadruple FDH mutant 4.7 Why does the quadruple mutant still consume some HCOO - , since CO 2 production is almost 0? Does this HCOO - go into biomass via the long pathway? HCOO - CH 2 =H 4 F Serine Cycle CO 2 CH 2 =H 4 MPT H 4 MPT CH 3 OH HCHO H 4 F Biomass
33. Biomass flux is not impaired in either the triple or quadruple mutant. My 14 C-Biomass flux data -> HCOO - consumed by the quadruple mutant goes into biomass via the long pathway. (This happens in the wild-type and triple mutant as well.) HCOO - CH 2 =H 4 F Serine Cycle CO 2 CH 2 =H 4 MPT H 4 MPT CH 3 OH HCHO H 4 F Biomass
34. Conclusions on formate dehydrogenase We have now identified all of the major FDHs (4 of them). CH 3 OH can enter the serine cycle via the long pathway, but cannot easily be converted to CO 2 at that point. Thus cells lacking FDH1-4 cannot grow on CH 3 OH alone. HCOO - CH 2 =H 4 F Serine Cycle CO 2 CH 2 =H 4 MPT H 4 MPT CH 3 OH HCHO H 4 F Biomass FDH 1-4
35. Metabolic fluxes in M. extorquens AM1: our view as of 2007 1. The enzyme-mediated long pathway is the cell’s only significant route for assimilating CH 3 OH. 2. Therefore HCOO - , not HCHO, is the key branch point. 3. Formate dehydrogenase (FDH) is important after all! HCOO - CH 2 =H 4 F Serine Cycle CO 2 CH 2 =H 4 MPT H 4 MPT CH 3 OH HCHO H 4 F Biomass
36. Metabolic fluxes in M. extorquens AM1: our view as of 2007 1. The enzyme-mediated long pathway is the cell’s only significant route for assimilating CH 3 OH. 2. Therefore HCOO - , not HCHO, is the key branch point. 3. Formate dehydrogenase (FDH) is important after all! HCOO - CH 2 =H 4 F Serine Cycle CO 2 CH 2 =H 4 MPT H 4 MPT CH 3 OH HCHO H 4 F Biomass
37. Metabolic fluxes in M. extorquens AM1: our view as of 2007 1. The enzyme-mediated long pathway is the cell’s only significant route for assimilating CH 3 OH. 2. Therefore HCOO - , not HCHO, is the key branch point. 3. Formate dehydrogenase (FDH) is important after all! HCOO - CH 2 =H 4 F Serine Cycle CO 2 CH 2 =H 4 MPT H 4 MPT CH 3 OH HCHO H 4 F Biomass FDH 1-4
38. Ongoing and future work C 1 metabolic network • Since HCOO - is the key branch point, study the regulation of FDHs and FtfL. HCOO - CH 2 =H 4 F Serine Cycle CO 2 CH 2 =H 4 MPT H 4 MPT CH 3 OH HCHO H 4 F Biomass FDH 1-4 FtfL
39. Ongoing and future work Interaction of C 1 and multicarbon networks • Two versions of the glyoxylate regeneration cycle have been proposed (Korotkova et al. 2002; Albers et al. 2006). Which occurs in AM1? • How (in terms of enzyme regulation/activity, metabolite levels, and fluxes) do cells transition from succinate (C 4 H 4 O 4 2- ) use to CH 3 OH use? HCOO - CH 2 =H 4 F Serine Cycle CO 2 CH 2 =H 4 MPT H 4 MPT CH 3 OH HCHO H 4 F Biomass
40. Undergrads can do this stuff! Accessible techniques • enzyme and metabolite assays • cloning, transformation, PCR • growth assays • mathematical modeling Preliminary success • Dan Yates • Jason Lum
41. Summary of metabolism research Long-term goal : Redesign methylotrophs for optimal production of useful chemicals from methanol. A B C k 1 k -1 k 2 k -2 MEASURE fluxes via label tracing MODEL fluxes mathematically REDIRECT fluxes via genetic engineering
42. Lidstrom lab members: Mila Chistoserdova, Ph.D. Marina Kalyuzhnaya, Ph.D. Mary Lidstrom, Ph.D. Jonathan Miller, M.S. Betsy Skovran, Ph.D. Tim Strovas, Ph.D. Acknowledgments
43. Former lab members: Kelly FitzGerald, Ph.D. (UW Tech Transfer) Xiaofeng Guo, Ph.D. (Brigham & Women’s) Chris Marx, Ph.D. (Harvard) Steve Van Dien, Ph.D. (Genomatica) Julia Vorholt, Ph.D. (ETH Zurich) Additional collaborator: George Kos á ly, Ph.D. (UW Mech Eng) Funding: Kirschstein NRSA (NIH) Acknowledgments