Moving Biodiversity to the Cloud @TDWG09

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The document discusses moving biodiversity data and tools to cloud computing. It lists several public biodiversity data sets that could be hosted on the cloud, like occurrence data from GBIF and the Atlas of Living Australia. It also lists examples of open-source bioinformatics tools that could be run through cloud computing platforms, such as Maxent, MrBayes, and BlastReduce. Finally, it suggests some methodologies could be developed for analyzing biodiversity data using cloud-based resources and tools.

Technology Business

MOVING
BIODIVERSITY
TO THE CLOUD
Change on the prtesentation due to interest

Javier de la Torre
Andrew W Hill
Tim Robertson envisioning life

Friday, November 13, 2009

What is cloud computing?

Friday, November 13, 2009

Scalable web applications

Data Processing

Friday, November 13, 2009

Democratization

Friday, November 13, 2009

Environment responsability

Friday, November 13, 2009

Detecting novel inﬂuenza
http://biodivertido.blogspot.com/

Friday, November 13, 2009

Intersecting GBIF network data with the
World Database on Protected Areas

Friday, November 13, 2009

160M points intersect 150K polygons

Friday, November 13, 2009

Data Tools Methodologies

We need data,tools and methodologies

Friday, November 13, 2009

TDWG Cloud Computing beerSession

Friday, November 13, 2009

GBIF species occurrence ALA
BHL text data TreeBASE
BHL aging data WDPA
IUCN range maps
MorphBank
IUCN species status
PESI
EOL content
AntBase
BOLD

1) Data Sets on the Cloud

Friday, November 13, 2009

Public Data Sets on AWS

Friday, November 13, 2009

2) Tools

OpenModeller AMQP
Maxent MrBayes
Hadoop Paup*
Disco Muscle
HBase/HTable MAFFT
Voldemort ImageMagick
BlastReduce GraphViz
Clustal SAM
RAxML TaxonFinder
GDAL ECAT Name Parser
PyCogent Tesarac
Clustr GeoCR
HIT Harvester ABCD Parse

Friday, November 13, 2009

Methodologies

Friday, November 13, 2009

COMMENTS
;)
biodivertido.blogspot.com
Friday, November 13, 2009

The Biodiversity Heritage Library (BHL), like many other projects within biodiversity informatics, maintains terabytes of data that must be safeguarded against loss. Further, a scalable and resilient infrastructure is required to enable continuous data interoperability, as BHL provides unique services to its community of users. This volume of data and associated availability requirements present significant challenges to a distributed organization like BHL, not only in funding capital equipment purchases, but also in ongoing system administration and maintenance. A new standardized system is required to bring new opportunities to collaborate on distributed services and processing across what will be geographically dispersed nodes. Such services and processing include taxon name finding, indexes or GUID/LSID services, distributed text mining, names reconciliation and other computationally intensive tasks, or tasks with high availability requirements.

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