- West Africa sweet potato diversity is structured partly by a climatic gradient. 112 accessions from Senegal and Togo were analyzed. - Genetic diversity analysis found higher diversity in tropical America compared to West Africa and Oceania. Five genetic groups were identified. - Morphological traits like root color, leaf shape discriminated genetic groups and were linked to climatic conditions. Group 2 was characterized by leaf traits, Group 5 by root and leaf color. - Genetic and morphological structuration was due to ecological factors like climate and environment, as well as farmer management. Conservation of this diversity is important for improving sweet potato under climate change.