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Sidra tul muntaha Qadeer
CIIT/SP21-RBT-006/ATD
Molecular analysis of the putative
transgenic plants
• The genomic DNA (gDNA)was isolated using
GenElute Plant Genomic DNA Miniprep Kit
(Sigma-St Louis, USA).
• PCR was performed using NPTII/APS2 primers
to detect the transgene.
• Southern blotting was done (Sambrook et al.
1989).
• Sample digestion at 37 C using BamH1.
• Electrophoresis.
• A biotin-labeled probe of NPTII gene fragment was
prepared.
• The chemiluminescent signals were detected.
• The regenerated transgenic lines transferred to the
greenhouse after they attained sufficient growth.
• A total of 61 independent T0 transgenic lines.
• Selected three transgenic lines were used for
testing their potential to tolerate and accumulate
heavy metals.
• One-month-old WT plants were used as controls.
• A 10-cm long shoot segments of the clonally
propagated WT and T0 independent transgenic
events were used for the test.
• The tolerance of transgenic lines to a mixture of
heavy metals was analyzed using a hydroponic
system.
The hydroponic medium was amended with a
mixture of five heavy metals
• Pb(NO3)2
• CdSO4
• CuSO4
• NiSO4
• Na3VO4
• At the end of 2 months, the plant shoots and
roots were harvested and the dry weight of
each plant was measured.
• Translocation factor was calculated by using
the formula TF=Cshoot/Croot. Where Cshoot
and Croot are metals concentration in the
shoot (mg kg1) and root of plant.
• The heavy metals were measured by coupled
plasma atomic emission spectroscopy.
• One gram of dry powdered plant tissues was
digested in10 ml concentrated nitric acid, 5ml
concentrated hydrochloric acid, and 0.5 ml
30% hydrogen peroxide.
• Samples were diluted to 50 ml with deionized
water prior to analysis.
• Calibration standard and internal standards
were used for quality control.
• Percentage recovery was calculated using the
following formula, % recovery=observed
concentration 100/true value.
• Three biological replicates were used for wild-
type plants and each of the transgenic line .
• ANOVA was performed to compare the
significant differences in mean values.

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molecular analysis of plants and its properties

  • 1. Sidra tul muntaha Qadeer CIIT/SP21-RBT-006/ATD
  • 2. Molecular analysis of the putative transgenic plants • The genomic DNA (gDNA)was isolated using GenElute Plant Genomic DNA Miniprep Kit (Sigma-St Louis, USA). • PCR was performed using NPTII/APS2 primers to detect the transgene. • Southern blotting was done (Sambrook et al. 1989).
  • 3. • Sample digestion at 37 C using BamH1. • Electrophoresis. • A biotin-labeled probe of NPTII gene fragment was prepared. • The chemiluminescent signals were detected.
  • 4. • The regenerated transgenic lines transferred to the greenhouse after they attained sufficient growth. • A total of 61 independent T0 transgenic lines. • Selected three transgenic lines were used for testing their potential to tolerate and accumulate heavy metals.
  • 5. • One-month-old WT plants were used as controls. • A 10-cm long shoot segments of the clonally propagated WT and T0 independent transgenic events were used for the test. • The tolerance of transgenic lines to a mixture of heavy metals was analyzed using a hydroponic system.
  • 6. The hydroponic medium was amended with a mixture of five heavy metals • Pb(NO3)2 • CdSO4 • CuSO4 • NiSO4 • Na3VO4
  • 7. • At the end of 2 months, the plant shoots and roots were harvested and the dry weight of each plant was measured. • Translocation factor was calculated by using the formula TF=Cshoot/Croot. Where Cshoot and Croot are metals concentration in the shoot (mg kg1) and root of plant.
  • 8. • The heavy metals were measured by coupled plasma atomic emission spectroscopy. • One gram of dry powdered plant tissues was digested in10 ml concentrated nitric acid, 5ml concentrated hydrochloric acid, and 0.5 ml 30% hydrogen peroxide. • Samples were diluted to 50 ml with deionized water prior to analysis. • Calibration standard and internal standards were used for quality control.
  • 9. • Percentage recovery was calculated using the following formula, % recovery=observed concentration 100/true value. • Three biological replicates were used for wild- type plants and each of the transgenic line . • ANOVA was performed to compare the significant differences in mean values.