Mitochondrial disease includes a group of neuromuscular diseases caused by damage to intracellular structures that produce energy, the mitochondria; disease symptoms usually involve muscle contractions that are weak or spontaneous.
Leber's hereditary optic neuropathy (LHON)
Leigh syndrome,
Myoneurogenic gastrointestinal encephalopathy (MNGIE)
KSS – (Kearns-Sayre Syndrome)
A lysosomal storage disease caused by acid sphingomyelinase deficiency (ASMD), which catalyzes the hydrolysis of sphingomyelin (SM) to ceramide and phosphocholine.
A lysosomal storage disease caused by acid sphingomyelinase deficiency (ASMD), which catalyzes the hydrolysis of sphingomyelin (SM) to ceramide and phosphocholine.
A mitochondrion (singular of mitochondria) is part of every cell in the body that contains genetic material.
Mitochondria are responsible for processing oxygen and converting substances from the foods we eat into energy for essential cell functions.
The mitochondria of the zygote come from the oocyte, that is, from the mother and almost never from the sperm, form of transmission is called maternal inheritance
Which mitochondrial gene is mutated.
The extent of replicative segregation of the mutant mitochondrial genome during the early stages of embryonic development.
The abundance of the mutant mitochondrial gene in a particular tissue.
The threshold level of mutant mitochondrial DNA required in a tissue before an abnormality is evident clinically
Mitochondrial disease affects tissues most highly dependent on ATP production
*Nerves
*Muscles
Endocrine
Kidney
Low energy-requiring tissues are rarely directly affected, but may be secondarily
Lung
Connective tissue
Symptoms can be intermittent
Increased energy demand (illness, exercise)
Decreased energy supply (fasting)
Common feature
myoclonus epilepsy, deafness, blindness, anemia, diabetes, seizures and loss of cerebral blood supply (stroke).
Myoclonic epilepsy and ragged-red fiber disease (MERRF)
MERRF is a member of a group of disorders called mitochondrial encephalomyopathies that feature mitochondrial defects with altered brain and muscle functions.
The term “ragged red fibers” refers to large clumps of abnormal mitochondria that accumulate mostly in muscle cells and are stained red by a dye that is specific for complex II of the electron transport chain.
rare, maternally inherited, heteroplasmic, (point mutation in tRNA lysine gene)
Mutation is MTTK*MERRF8344G.
MT means mitochondrial gene is mutated
T means transfer RNA gene
K means the single-letter amino acid designation for lysine
MERRF means the clinical features
8344G means the mutant nucleotide is guanine (G) at nucleotide position 8344
If 90% of the mitochondria in nerve and muscle cells carry the MTTK*MERRF8344G mutation, then the defining symptoms of MERRF are present.
Maternally inherited mitochondrial disease
The MTTL1*MELAS3243G mutation accounts for more than 80% of the cases of MELAS.
This base substitution is in one of the two mitochondrial transfer RNALeu genes.
the A3243G mutation occurs in thetRNALeu(UUR) gene
When this mutation is present in ≥90% of the mitochondrial DNA of muscle tissue, there is an increased likelihood of recurrent strokes, dementia, epilepsy, and ataxia.
When heteroplasmy for the A3243G mutation
is ~40% to 50%, chronic progressive external ophthalmoplegia (CPEO), myopathy, and deafness are likely to occur.
Other MELAS mutations occur at sites 3252, 3271, and 3291 within the tRNALeu(UUR) gene and in the mitochondrial tRNAVal (MTTV) and COX III (MTCO3) genes.
Reduced activities in Complexes I and IV are established
refsum disease its a genetical disorder which is autosomal recessive phytanoyl-CoA-hydroxylase is the enzyme location of this enzyme is chromosome 10p13
Zellweger Syndrome is one class of Cerebrohepatorenal syndromes. It is a rare hereditary disorder and caused by a gene mutation that affects the way peroxisomes function.
Approach to different Demyelinating disorders in the Paediatric age-group. Namely- acute disseminated encephalomyelitis, paediatric multiple sclerosis, neuromyelitis optica. Approach, MRI features, differences, clinical features
Inborn errors of metabolism- focusing on its predominant adult onset forms, neurological perspective, clinical & biochemical approach to diagnosis, and neuroimaging findings.
A mitochondrion (singular of mitochondria) is part of every cell in the body that contains genetic material.
Mitochondria are responsible for processing oxygen and converting substances from the foods we eat into energy for essential cell functions.
The mitochondria of the zygote come from the oocyte, that is, from the mother and almost never from the sperm, form of transmission is called maternal inheritance
Which mitochondrial gene is mutated.
The extent of replicative segregation of the mutant mitochondrial genome during the early stages of embryonic development.
The abundance of the mutant mitochondrial gene in a particular tissue.
The threshold level of mutant mitochondrial DNA required in a tissue before an abnormality is evident clinically
Mitochondrial disease affects tissues most highly dependent on ATP production
*Nerves
*Muscles
Endocrine
Kidney
Low energy-requiring tissues are rarely directly affected, but may be secondarily
Lung
Connective tissue
Symptoms can be intermittent
Increased energy demand (illness, exercise)
Decreased energy supply (fasting)
Common feature
myoclonus epilepsy, deafness, blindness, anemia, diabetes, seizures and loss of cerebral blood supply (stroke).
Myoclonic epilepsy and ragged-red fiber disease (MERRF)
MERRF is a member of a group of disorders called mitochondrial encephalomyopathies that feature mitochondrial defects with altered brain and muscle functions.
The term “ragged red fibers” refers to large clumps of abnormal mitochondria that accumulate mostly in muscle cells and are stained red by a dye that is specific for complex II of the electron transport chain.
rare, maternally inherited, heteroplasmic, (point mutation in tRNA lysine gene)
Mutation is MTTK*MERRF8344G.
MT means mitochondrial gene is mutated
T means transfer RNA gene
K means the single-letter amino acid designation for lysine
MERRF means the clinical features
8344G means the mutant nucleotide is guanine (G) at nucleotide position 8344
If 90% of the mitochondria in nerve and muscle cells carry the MTTK*MERRF8344G mutation, then the defining symptoms of MERRF are present.
Maternally inherited mitochondrial disease
The MTTL1*MELAS3243G mutation accounts for more than 80% of the cases of MELAS.
This base substitution is in one of the two mitochondrial transfer RNALeu genes.
the A3243G mutation occurs in thetRNALeu(UUR) gene
When this mutation is present in ≥90% of the mitochondrial DNA of muscle tissue, there is an increased likelihood of recurrent strokes, dementia, epilepsy, and ataxia.
When heteroplasmy for the A3243G mutation
is ~40% to 50%, chronic progressive external ophthalmoplegia (CPEO), myopathy, and deafness are likely to occur.
Other MELAS mutations occur at sites 3252, 3271, and 3291 within the tRNALeu(UUR) gene and in the mitochondrial tRNAVal (MTTV) and COX III (MTCO3) genes.
Reduced activities in Complexes I and IV are established
refsum disease its a genetical disorder which is autosomal recessive phytanoyl-CoA-hydroxylase is the enzyme location of this enzyme is chromosome 10p13
Zellweger Syndrome is one class of Cerebrohepatorenal syndromes. It is a rare hereditary disorder and caused by a gene mutation that affects the way peroxisomes function.
Approach to different Demyelinating disorders in the Paediatric age-group. Namely- acute disseminated encephalomyelitis, paediatric multiple sclerosis, neuromyelitis optica. Approach, MRI features, differences, clinical features
Inborn errors of metabolism- focusing on its predominant adult onset forms, neurological perspective, clinical & biochemical approach to diagnosis, and neuroimaging findings.
Cystinosis is the most common hereditary cause of renal Fanconi syndrome in children.
It is an autosomal recessive lysosomal storage disorder caused by mutations in the CTNS gene encoding for the carrier protein cystinosin, transporting cystine out of the lysosomal compartment.
Defective cystinosin function leads to intra-lysosomal cystine accumulation in all body cells and organs
Disorders of amino acid metabolism
Disorders of renal amino acid transport
Disorders of carbohydrate metabolism and transport
Carbohydrate-deficient protein syndromes
carbohydrate metabolism and transport
Disorders of fatty acid oxidation
Disorders of purine and pyrimidine metabolism
Disorders of lipid and lipoprotein metabolism
Ceroid lipofuscinosis and other lipidoses.
Disorders of serum lipoproteins
Lysosomal disorders
Peroxisomal disorders
Disorders of metal metabolism
Porphyrias
The immune response is how our body recognizes and defends itself against pathogens like bacteria, viruses, and substances that appear foreign and harmful.
A chronic toxicology study provides inferences about the long-term effect of a test substance in animals, and it may be extrapolated to the human safety of the test substance
The ability to recreate computational results with minimal effort and actionable metrics provides a solid foundation for scientific research and software development. When people can replicate an analysis at the touch of a button using open-source software, open data, and methods to assess and compare proposals, it significantly eases verification of results, engagement with a diverse range of contributors, and progress. However, we have yet to fully achieve this; there are still many sociotechnical frictions.
Inspired by David Donoho's vision, this talk aims to revisit the three crucial pillars of frictionless reproducibility (data sharing, code sharing, and competitive challenges) with the perspective of deep software variability.
Our observation is that multiple layers — hardware, operating systems, third-party libraries, software versions, input data, compile-time options, and parameters — are subject to variability that exacerbates frictions but is also essential for achieving robust, generalizable results and fostering innovation. I will first review the literature, providing evidence of how the complex variability interactions across these layers affect qualitative and quantitative software properties, thereby complicating the reproduction and replication of scientific studies in various fields.
I will then present some software engineering and AI techniques that can support the strategic exploration of variability spaces. These include the use of abstractions and models (e.g., feature models), sampling strategies (e.g., uniform, random), cost-effective measurements (e.g., incremental build of software configurations), and dimensionality reduction methods (e.g., transfer learning, feature selection, software debloating).
I will finally argue that deep variability is both the problem and solution of frictionless reproducibility, calling the software science community to develop new methods and tools to manage variability and foster reproducibility in software systems.
Exposé invité Journées Nationales du GDR GPL 2024
ISI 2024: Application Form (Extended), Exam Date (Out), EligibilitySciAstra
The Indian Statistical Institute (ISI) has extended its application deadline for 2024 admissions to April 2. Known for its excellence in statistics and related fields, ISI offers a range of programs from Bachelor's to Junior Research Fellowships. The admission test is scheduled for May 12, 2024. Eligibility varies by program, generally requiring a background in Mathematics and English for undergraduate courses and specific degrees for postgraduate and research positions. Application fees are ₹1500 for male general category applicants and ₹1000 for females. Applications are open to Indian and OCI candidates.
Richard's aventures in two entangled wonderlandsRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
The use of Nauplii and metanauplii artemia in aquaculture (brine shrimp).pptxMAGOTI ERNEST
Although Artemia has been known to man for centuries, its use as a food for the culture of larval organisms apparently began only in the 1930s, when several investigators found that it made an excellent food for newly hatched fish larvae (Litvinenko et al., 2023). As aquaculture developed in the 1960s and ‘70s, the use of Artemia also became more widespread, due both to its convenience and to its nutritional value for larval organisms (Arenas-Pardo et al., 2024). The fact that Artemia dormant cysts can be stored for long periods in cans, and then used as an off-the-shelf food requiring only 24 h of incubation makes them the most convenient, least labor-intensive, live food available for aquaculture (Sorgeloos & Roubach, 2021). The nutritional value of Artemia, especially for marine organisms, is not constant, but varies both geographically and temporally. During the last decade, however, both the causes of Artemia nutritional variability and methods to improve poorquality Artemia have been identified (Loufi et al., 2024).
Brine shrimp (Artemia spp.) are used in marine aquaculture worldwide. Annually, more than 2,000 metric tons of dry cysts are used for cultivation of fish, crustacean, and shellfish larva. Brine shrimp are important to aquaculture because newly hatched brine shrimp nauplii (larvae) provide a food source for many fish fry (Mozanzadeh et al., 2021). Culture and harvesting of brine shrimp eggs represents another aspect of the aquaculture industry. Nauplii and metanauplii of Artemia, commonly known as brine shrimp, play a crucial role in aquaculture due to their nutritional value and suitability as live feed for many aquatic species, particularly in larval stages (Sorgeloos & Roubach, 2021).
Professional air quality monitoring systems provide immediate, on-site data for analysis, compliance, and decision-making.
Monitor common gases, weather parameters, particulates.
Travis Hills' Endeavors in Minnesota: Fostering Environmental and Economic Pr...Travis Hills MN
Travis Hills of Minnesota developed a method to convert waste into high-value dry fertilizer, significantly enriching soil quality. By providing farmers with a valuable resource derived from waste, Travis Hills helps enhance farm profitability while promoting environmental stewardship. Travis Hills' sustainable practices lead to cost savings and increased revenue for farmers by improving resource efficiency and reducing waste.
Comparing Evolved Extractive Text Summary Scores of Bidirectional Encoder Rep...University of Maribor
Slides from:
11th International Conference on Electrical, Electronics and Computer Engineering (IcETRAN), Niš, 3-6 June 2024
Track: Artificial Intelligence
https://www.etran.rs/2024/en/home-english/
hematic appreciation test is a psychological assessment tool used to measure an individual's appreciation and understanding of specific themes or topics. This test helps to evaluate an individual's ability to connect different ideas and concepts within a given theme, as well as their overall comprehension and interpretation skills. The results of the test can provide valuable insights into an individual's cognitive abilities, creativity, and critical thinking skills
ANAMOLOUS SECONDARY GROWTH IN DICOT ROOTS.pptxRASHMI M G
Abnormal or anomalous secondary growth in plants. It defines secondary growth as an increase in plant girth due to vascular cambium or cork cambium. Anomalous secondary growth does not follow the normal pattern of a single vascular cambium producing xylem internally and phloem externally.
Earliest Galaxies in the JADES Origins Field: Luminosity Function and Cosmic ...Sérgio Sacani
We characterize the earliest galaxy population in the JADES Origins Field (JOF), the deepest
imaging field observed with JWST. We make use of the ancillary Hubble optical images (5 filters
spanning 0.4−0.9µm) and novel JWST images with 14 filters spanning 0.8−5µm, including 7 mediumband filters, and reaching total exposure times of up to 46 hours per filter. We combine all our data
at > 2.3µm to construct an ultradeep image, reaching as deep as ≈ 31.4 AB mag in the stack and
30.3-31.0 AB mag (5σ, r = 0.1” circular aperture) in individual filters. We measure photometric
redshifts and use robust selection criteria to identify a sample of eight galaxy candidates at redshifts
z = 11.5 − 15. These objects show compact half-light radii of R1/2 ∼ 50 − 200pc, stellar masses of
M⋆ ∼ 107−108M⊙, and star-formation rates of SFR ∼ 0.1−1 M⊙ yr−1
. Our search finds no candidates
at 15 < z < 20, placing upper limits at these redshifts. We develop a forward modeling approach to
infer the properties of the evolving luminosity function without binning in redshift or luminosity that
marginalizes over the photometric redshift uncertainty of our candidate galaxies and incorporates the
impact of non-detections. We find a z = 12 luminosity function in good agreement with prior results,
and that the luminosity function normalization and UV luminosity density decline by a factor of ∼ 2.5
from z = 12 to z = 14. We discuss the possible implications of our results in the context of theoretical
models for evolution of the dark matter halo mass function.
3. mtDNA
• Mitochondrial DNA is composed of 37 genes found in the single
circular chromosome measuring 16,569 base pairs in length.
• Among these,
• 13 genes encode proteins of the electron transport chain (abbreviated
"ETC"),
• 22 encode transfer RNA (tRNA), and two encode the large and small
subunits that form ribosomal RNA (rRNA).
• The 13 proteins involved in the ETC of the mitochondrion are
necessary for oxidative phosphorylation.
4.
5.
6. Oxidative phosphorylation
•Oxidative phosphorylation (or OXPHOS in short) is the
metabolic pathway in which cells use enzymes to oxidize
nutrients, thereby releasing energy which is used to reform ATP.
•In most eukaryotes, this takes place inside mitochondria.
Almost all aerobic organisms carry out oxidative
phosphorylation.
7.
8. •Mutations in these proteins results in impaired energy
production by mitochondria.
•This cellular energy deficit manifests most readily in tissues that
rely heavily upon aerobic metabolism such as the brain, skeletal
and cardiac muscles, sensory organs, and kidneys.
•This is one factor involved in the presentation of mitochondrial
diseases.
9. •Mitochondrial disease includes a group of neuromuscular
diseases caused by damage to intracellular structures that
produce energy, the mitochondria; disease symptoms usually
involve muscle contractions that are weak or spontaneous.
•There is no specific treatment for mitochondrial diseases
(myopathies).
•The prognosis varies according to the disease type; in general,
these diseases are progressive and can cause death.
10.
11. Inherited mtDNA diseases
mtDNA is maternally inherited - through the egg
Complex, unpredictable pattern of inheritance
These diseases are fatal or severely debilitating
No cure for mtDNA disease
11
12. Mitochondrial diseases include:
• Leber's hereditary optic neuropathy (LHON)
• visual loss beginning in young adulthood eye disorder characterized by progressive
loss of central vision due to degeneration of the optic nerves and retina
• Leigh syndrome,
• subacute sclerosing encephalopathyafter normal development the disease usually
begins late in the first year of life, although onset may occur in adulthood a rapid
decline in function occurs and is marked by seizures, altered states of consciousness,
dementia, ventilatory failure
• Myoneurogenic gastrointestinal encephalopathy (MNGIE)
• gastrointestinal pseudo-obstruction
• Mitochondrial myopathy, encephalomyopathy, lactic acidosis, stroke-like
symptoms (MELAS)
• KSS – (Kearns-Sayre Syndrome)
16. KSS – (Kearns-Sayre Syndrome)
• characterized by progressive external ophthalmoplegia (PEO),
pigmentary retinitis and an onset before the age of 20 years.
• Common additional features include deafness, cerebellar ataxia and
heart block.
• There is a defect in coenzyme Q metabolism in KSS.
17. Genetics
• The mtDNA deletions that cause Kearns-Sayre syndrome result in the loss
of genes important for mitochondrial protein formation and oxidative
phosphorylation.
• The most common deletion removes 4,997 nucleotides, which includes
twelve mitochondrial genes.
• Deletions of mtDNA result in impairment of oxidative phosphorylation and
a decrease in cellular energy production.
• Regardless of which genes are deleted, all steps of oxidative
phosphorylation are affected.
18. Symptoms
• Onset less than 20 years of age
• Progressive external Ophthalmoplegia,
• retinal pigmental degeneration,
• sometimes heart block,
• Ataxia (Ataxia is a neurological sign consisting of lack of voluntary
coordination of muscle movements)
• hyperparathyroidism and short stature.
19. Kearns-Sayre Syndrome (KSS) is defined by three criteria that
seem invariable:
• Pigmentary retinopathy
• Children with KSS appear normal at birth
• Boys and girls equally affected
20. • The Ophthalmoplegia begins at age 5, can be recognized as early as
age 2
• Parents notice ptosis or constricted eye movements.
Characteristically affects all eye muscles equally and never the pupils
21. Many other abnormalities have been found in patients with
KSS, including
•mental retardation
•Babinski signs
•limb weakness
•hearing loss
•seizures
•short stature
•delayed puberty
•various endocrine abnormalities.
22. •The Pigmentary Retinopathy (PR) a salt-and-pepper retinopathy,
called atypical to distinguish it from typical bone spicules retinitis
pigmentosa
•Pigmentary retinopathy indicates the retinal pigment epithelium
is affected
•Histologically shows abnormalities of the retinal pigment
epithelium as well as rods and cones
•PR accompanied by a mild decrease in vision in half the cases.
24. Endocrinologically, KSS patient may have:
•Delayed sexual maturation
•Short stature,
• detailed studies of growth hormone and
somatostatin have not been performed
•Diabetes mellitus appears in approximately 20%
of patients with KSS
•Hypoparathyroidism has been described
25. •Onset may be anywhere from childhood to adulthood
•Mental Retardation can again vary from mild to frank dementia
•Seizures are not a prominent feature of KSS
•Skeletal Muscle Biopsy shows in almost all patients with KSS
typical ragged-red fibers
•Heart muscle has no ragged-red fibers
•There is no histopathological difference between KSS and
PEO(progressive external ophthalmoplegia) in muscle biopsy
specimens
27. Leigh Syndrome
• Leigh syndrome is a rare genetic neurometabolic disorder.
• It is characterized by the degeneration of the central nervous system (i.e.,
brain, spinal cord, and optic nerve).
• Leigh syndrome affects at least 1 in 40,000 newborns.The condition is more
common in certain populations.
28. Genetics
• Leigh syndrome can be caused by mutations in one of more than 75
different genes.
• In humans, most genes are found in DNA in the cell's nucleus, called
nuclear DNA. However, some genes are mitochondria. This type of DNA is
known as mitochondrial DNA (mtDNA).
• While most people with Leigh syndrome have a mutation in nuclear DNA,
about 20 percent have a mutation in mtDNA.
29. •Most genes associated with Leigh syndrome are involved in the
process of energy production in mitochondria.
•Mitochondria use oxygen to convert the energy from food into
a form cells can use through a process called oxidative
phosphorylation.
30. symptoms
• The symptoms of Leigh syndrome usually begin between the ages of
three months and two years, but some patients do not exhibit signs and
symptoms until several years later.
• Symptoms are associated with progressive neurological deterioration
and may include loss of previously acquired motor skills, loss of appetite,
vomiting, irritability, and/or seizure activity.
• As Leigh syndrome progresses, symptoms may also include generalized
weakness, lack of muscle tone (hypotonia), and episodes of lactic
acidosis, which may lead to impairment of respiratory and kidney
function.
31. • The earliest signs may be poor sucking ability,and the loss of head
control and motor skills.
• These symptoms may be accompanied by loss of appetite, vomiting,
irritability, continuous crying, and seizures
32. Treatment
• The most common treatment for Leigh's disease is thiamine orVitamin
B1.
• Oral sodium bicarbonate or sodium citrate may also be prescribed to
manage lactic acidosis.
• Researchers are currently testing dichloroacetate to establish its
effectiveness in treating lactic acidosis.
• In individuals who have the X-linked form of Leigh’s disease, a high-fat,
low-carbohydrate diet may be recommended.
36. 36
Negative results have a high false
negative rate;
if mitochondrial
disease is suspected, the patient
should be refered to a Mitochondrial
Disease Center.
37. There is no cure for mitochondrial disease
• Some helpful treatments include
– vitamins such as thiamine (B1), riboflavin (B12), vitamin C, and
vitamin E. Lipoic acid and coenzyme Q-10 are also useful
supplements.
• Some researchers are examining using drugs to block lactic
acid buildup in the body that is common in mitochondrial
disease.
• Others are trying very low carbohydrate diets to reduce the
workload for mitochondria.
ophthalmoplegia,
paralysis of the muscles within or surrounding the eye
Ophthalmoplegia- paralysis of the muscles within or surrounding the eye.
Babinski reflex is one of the normal reflexes in infants. Reflexes are responses that occur when the body receives a certain stimulus. The Babinski reflex occurs after the sole of the foot has been firmly stroked. The big toe then moves upward or toward the top surface of the foot.
bone spicules - bony matrix in the development of a new bone.
Retinitis- inflammation of the retina of the eye.
Fundus
the part of the eyeball opposite the pupil.
somatostatin - Somatostatin, also known as growth hormone–inhibiting hormone (GHIH)