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This document provides information about a meeting to design an integrated information system called MARS (Microbial Antarctic Resource System) for microbial biodiversity data from Antarctica. The goals are to capture stakeholder needs, scope the project, identify requirements, examine challenges of unifying different data types, and provide recommendations. Participants will discuss priorities and needs, examine sample data, and have hands-on activities over multiple days to iteratively design MARS.
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A new atlas, providing the most thorough audit of marine life in the Southern Ocean, is published this week by the Scientific Committee on Antarctic Research (SCAR). Leading marine biologists and oceanographers from all over the world spent the last four years compiling everything they know about ocean species from microbes to whales. It’s the first time that such an effort has been undertaken since 1969 when the American Society of Geography published its Antarctic Map Folio Series.
In an unprecedented international collaboration 147 scientists from 91 institutions across 22 countries (Australia, Belgium, Brazil, Canada, Chile, Denmark, France, Germany, Ireland, Italy, Japan, the Netherlands, New Zealand, Norway, Poland, Portugal, Russia, South Africa, Spain, Switzerland, the UK and the USA) combined their expertise and knowledge to produce the new Biogeographic Atlas of the Southern Ocean. More than 9000 species are recorded, ranging from microbes to whales. Hundreds of thousands of records show the extent of scientific knowledge on the distribution of life in the Southern Ocean. In 66 chapters, the scientists examine the evolution, physical environment, genetics and possible impact of climate change on marine organisms in the region.
Chief editor, Claude De Broyer, of the Royal Belgian Institute of Natural Sciences, said: “This is the first time that all the records of the unique Antarctic marine biodiversity, from the very beginnings of Antarctic exploration in the days of Captain Cook, have been compiled, analysed and mapped by the scientific community. It has resulted in a comprehensive atlas and an accessible database of useful information on the conservation of Antarctic marine life.”
Register of Antarctic Marine Species - AquaRES
RAMS (the Register of Antarctic Marine Species) is a free and open access database that contains taxonomic and biogeographic data for over 18,000 accepted Antarctic marine species. It is a community-driven project with a board of 60 editors. RAMS is part of the larger WoRMS (World Register of Marine Species) database. It serves as a taxonomic backbone for many Antarctic biodiversity projects and is aimed at supporting science, conservation, and management efforts. RAMS data is accessible on the biodiversity.aq website.
Mars Workshop
Presentation given at the Microbial Antarctic Resource System (mARS), during the SCAR Open Science Conference 2012, in Portland. Presented by Alison Murray and Bruno Danis.
140712 antabif egbamm
Presentation given at the Expert Group on Birds and Marine Mammals at the SCAR Open Science Conference.
150712 antabif data_publication_lsssg
Presentation given at the Standing Groups meeting at the SCAR Open Science Conference. This presentation focuses on a facet of the ANTABIF architecture, the GBIF Integrated Publishing Toolkit
150712 antabif dry_valleys
Presentation given at the Dry Valleys workshop, in the framework of the 2012 SCAR Open Science Conference. @biodiversityaq
ANTABIF at the BELSPO-SOA event
This presentation was given at the joint Belgian Science Policy Office - Chinese State Oceanic Administration.
Antabif on mars
The document describes a dataset of sea stars (Antarctic starfish) collected during the ANDEEP3 expedition in 2005. The expedition focused on deep-sea stations in the Powell Basin and Weddell Sea of Antarctica. Sea stars were collected using trawling methods at depths ranging from 1,047 to 4,931 meters. The dataset includes information on the starfish specimens collected, such as location and depth of collection. A data paper describing the dataset was published in the peer-reviewed open-access journal ZooKeys to make the dataset available and provide scholarly credit to the data publishers.
ANTABIF at BNCAR
Presentation given by Anton Van de Putte at the Belgian National Committee on Antarctic Research in March 2012
Réseaux d'information sur la biodiversité - situation outils et perspectives
Présentation donnée dans le cadre du cours de biogéographie (Chantal De Ridder, ULB)
Antarctic Biodiversity Networks: new architecture, new tools
Presentation given at the MNHM, Paris in December 2011. GIves an overview of the new architecture and new tools available for the community.
Antabif training
This document provides an overview and objectives of an ANTABIF training session. The training will familiarize participants with ANTABIF's architecture, functionalities, tools and standards. It will include hands-on exercises with dummy and real data. The objectives are to learn about ANTABIF, see demonstrations of its features, and collect feedback on its usefulness. The agenda includes technical overviews, standards, publishing tools, and hands-on sessions.
Presentation at College de Belgique
Presentation given by Anton Van de Putte at the Collège de Belgique, October 2011.
An overview of Antarctic biodiversity networks
The document summarizes Bruno Danis' presentation on Antarctic Biodiversity Networks at the GBIF Science Symposium 2011. Some key points:
- Antarctic Treaty of 1959 inspired sharing of scientific data from Antarctica freely.
- SCAR-MarBIN and ANTABIF facilitate open access to Antarctic biodiversity data through various tools and portals.
- Achievements include the Reference Antarctic Marine Species database, over 1 million georeferenced records published through GBIF and OBIS, and community projects like the Antarctic Field Guides and Biogeography Atlas of the Southern Ocean.
- Future challenges include continued technological improvements and promoting a culture of open data sharing in the Antarctic community.
Danis ANTABIF update for SCADM
Progress report give at the Standing Committee on Antarctic Data Management, in Palma de Mallorca, on September 9, 2011
Antabif general
Presentation given during the 8th Symposium on Polar Studies 7 - 9 September 2011, Palma de Mallorca, Spain.
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Mars intro
- 1. Welcome to MARS Microbial Antarctic Resource System
- 2. Welcome to MARS Microbial Antarctic Resource System
- 3. Logistics • WiFi login/pass • Coffee • Food • Toilets
- 4. Why are we here? • ANTABIF: Antarctic Biodiversity Information Facility • IPY: International Polar Year • CAML: Census of Antarctic Marine Life • CCAMBIO: Climate Change and Antarctic Microbial Biodiversity • Try to design an integrated information system for Antarctic microbes
- 5. Proposed approach • 1st day to capture needs and ideas • Interactive • Speakup • Hands-on • Virtual participants • Interdisciplinary
- 6. Challenges • Different levels of data processing on different data sets • Different regions of the same gene (16S rRNA or 18S rRNA) that are not comparable or alignable vs. nearly full length gene sequences generated in the past. • Different levels of sequencing effort • Different sequencing technologies • Providing raw/semi processed data AND the processed data that publications are built on. • Can consider how ICoMM dealt with this for short-read pyrosequencing data; there are ~ 20 Southern Ocean data sets there in FASTA format and processed format
- 7. Challenge To unify data from different biodiversity domains
- 8. Expected outcomes • scope MARS • identify prioritized requirements for MARS • reality check: identification of technology and standards • identification of stakeholders • recommendations (white paper) • organize SCAR OSC meeting
- 9. Today • Intro presentations • Discussions • Examination of actual data • Identification of your needs • Identification of your priorities • (broad) scoping and requirements for MARS
- 10. Rest of the week • Open • Focused groups, hands-on • Agile, iterative workflow • Input always welcome • Communication @biodiversityaq
Editor's Notes
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