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150712 antabif dry_valleys
The Antarctic Biodiversity Information Facility (ANTABIF) aims to provide free, open, and interoperable access to biodiversity data focusing on Antarctic marine life. It includes a dynamic register of over 17,000 taxa, access to 900 datasets with 2.5 million records dating back to 1900, and efforts to promote scientific research and conservation. The document highlights the achievements and future developments of ANTABIF, including its data management tools and contributions to Antarctic biodiversity research.
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150712 antabif dry_valleys
- 1. ANTABIF: DryValleys, 2012 Antarctic Biodiversity Information Facility Sunday 15 July 12
- 2. Our vision: Antarctic biodiversity data are open, linked, useful, interoperable and safe. Sunday 15 July 12
- 3. What’s ANTABIF? David B, Danis B, Griffiths HJ Sunday 15 July 12
- 4. What’s ANTABIF? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component David B, Danis B, Griffiths HJ Sunday 15 July 12
- 5. What’s ANTABIF? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data: taxonomy and biogeography David B, Danis B, Griffiths HJ Sunday 15 July 12
- 6. What’s ANTABIF? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data: taxonomy and biogeography • SCAR-MarBIN => ANTABIF projects David B, Danis B, Griffiths HJ Sunday 15 July 12
- 7. What’s ANTABIF? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data: taxonomy and biogeography • SCAR-MarBIN => ANTABIF projects • Science, conservation and management David B, Danis B, Griffiths HJ Sunday 15 July 12
- 8. What’s ANTABIF? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data: taxonomy and biogeography • SCAR-MarBIN => ANTABIF projects • Science, conservation and management • Networked community developments David B, Danis B, Griffiths HJ Sunday 15 July 12
- 9. What’s ANTABIF? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data: taxonomy and biogeography • SCAR-MarBIN => ANTABIF projects • Science, conservation and management • Networked community developments • Scientific impact: Citations : 423, Publications: 58, H-Index: 11 David B, Danis B, Griffiths HJ Sunday 15 July 12
- 10. What’s ANTABIF? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data: taxonomy and biogeography • SCAR-MarBIN => ANTABIF projects • Science, conservation and management • Networked community developments • Scientific impact: Citations : 423, Publications: 58, H-Index: 11 David B, Danis B, Griffiths HJ Sunday 15 July 12
- 11. Progress: Taxonomy 17,098 taxa The first dynamic Register of Antarctic Marine Species Taxonomic backbone Board of 64 editors Feeds World Register of Marine Species, Catalogue of Life and Encyclopedia of Life Sunday 15 July 12
- 12. Progress: Taxonomy 17,098 taxa The first dynamic Register of Antarctic Marine Species Taxonomic backbone Board of 64 editors Feeds World Register of Marine Species, Catalogue of Life and Encyclopedia of Life Sunday 15 July 12
- 13. Progress: Biogeography • Single access to 900 datasets • 2.5 million records • Data back to 1900 (Pygoscelis adeliae) • Spatial data on over 5000 taxa • Downloadable • Interoperable • Free and open Sunday 15 July 12
- 14. Progress: Biogeography • Single access to 900 datasets • 2.5 million records • Data back to 1900 (Pygoscelis adeliae) • Spatial data on over 5000 taxa • Downloadable • Interoperable • Free and open Sunday 15 July 12
- 15. progress: ANTABIF Architecture Sunday15 July 12
- 16. progress: ANTABIF Architecture • www.biodiversity.aq Sunday 15 July 12
- 17. progress: ANTABIF Architecture • www.biodiversity.aq • data.biodiversity.aq Sunday 15 July 12
- 18. progress: ANTABIF Architecture • www.biodiversity.aq • data.biodiversity.aq • ipt.biodiversity.aq Sunday 15 July 12
- 19. progress: ANTABIF Architecture • www.biodiversity.aq • data.biodiversity.aq • ipt.biodiversity.aq • afg.biodiversity.aq Sunday 15 July 12
- 20. progress: ANTABIF Architecture • www.biodiversity.aq • data.biodiversity.aq • ipt.biodiversity.aq • afg.biodiversity.aq • atlas.biodiversity.aq Sunday 15 July 12
- 21. progress: ANTABIF Architecture • www.biodiversity.aq • data.biodiversity.aq • ipt.biodiversity.aq • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aq Sunday 15 July 12
- 22. progress: ANTABIF Architecture Promote)the)communit • www.biodiversity.aq MODULAR development)of)N ARCHITECTURE • data.biodiversity.aq • GBIF)promotes)training)and)us • ipt.biodiversity.aq • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aq ANTABIF Sunday 15 July 12
- 23. progress: ANTABIF Architecture Nodes)Investment)in)new)func@onality) Promote)the)communit • • www.biodiversity.aq MODULAR development)of)N Nodes)extend)the)plaGorm)with)new)modules) ARCHITECTURE • data.biodiversity.aq • GBIF)promotes)training)and)us Data discovery A)module)we)all)need) • ipt.biodiversity.aq A)module)I)need) • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aq ANTABIF Sunday 15 July 12
- 24. progress: ANTABIF Architecture Nodes)Investment)in)new)func@onality) Promote)the)communit Nodes)Investment)in)new)func@ona • • www.biodiversity.aq MODULAR development)of)N Nodes)extend)the)plaGorm)with)new)modules) ARCHITECTURE • Nodes)extend)the)plaGorm)with)new)mod • GBIF)promotes)training)and)us • data.biodiversity.aq Data discovery A)module)we)all)need) • ipt.biodiversity.aq A)module)I)need) Data visualization A)module)we)all)need) A)module)I)need) • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aq ANTABIF Sunday 15 July 12
- 25. progress: ANTABIF Architecture Nodes)Investment)in)new)func@onality) NPT)can)be)extended)by)crea@ng)an Promote)the)communit Nodes)Investment)in)new)func@ona • • www.biodiversity.aq installing)Modules) MODULAR development)of)N Nodes)extend)the)plaGorm)with)new)modules) ARCHITECTURE • Nodes)extend)the)plaGorm)with)new)mod • GBIF)promotes)training)and)us • data.biodiversity.aq Data discovery Data products A)module)we)all)need) • ipt.biodiversity.aq A)module)I)need) Data visualization A)module)we)all)need) A)module)I)need) • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aq ANTABIF Sunday 15 July 12
- 26. data.biodiversity.aq • data discovery interface • visualize occurrence data on map • view taxonomic data • download data • view metrics • send feedback • access technical documentation Sunday 15 July 12
- 27. Data flow (user’s point of view) Your data DwC-A IPT ANTABIF standardize upload publish publish Data Paper Sunday 15 July 12
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- 36. ipt.biodiversity.aq • Integrated Publishing Toolkit • standardize and clean your data • manage primary biodiversity data • manage associated metadata • choose collaborators • generate and submit a Data Paper • push data and metadata to Information Systems Sunday 15 July 12
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- 42. Reward data publishing Metadata document Data Paper Sunday 15 July 12
- 43. Proof of concept Sunday15 July 12
- 44. Proof of concept Sunday15 July 12
- 45. Proof of concept Sunday15 July 12
- 46. Proof of concept ZooKeys 185: 73–78 (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition doi: 10.3897/zookeys.185.3078 DAtA PAPEr A peer-reviewed open-access journal 73 www.zookeys.org Launched to accelerate biodiversity research Antarctic Starfish (Echinodermata, Asteroidea) from the ANDEEP3 expedition Bruno Danis1, Michel Jangoux2, Jennifer Wilmes2 1 ANTABIF, 29, rue Vautier, 1000, Brussels, Belgium 2 Université Libre de Bruxelles, 50, av FD Roosevelt, 1050, Brussels, Belgium Corresponding author: Bruno Danis (bruno.danis@gmail.com) Academic editor: Vishwas Chavan | Received 13 March 2012 | Accepted 18 April 2012 | Published 23 April 2012 Citation: Danis B, Jangoux M, Wilmes J (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition. ZooKeys 185: 73–78. doi: 10.3897/zookeys.185.3078 Abstract This dataset includes information on sea stars collected during the ANDEEP3 expedition, which took place in 2005. The expedition focused on deep-sea stations in the Powell Basin and Weddell Sea. Sea stars were collected using an Agassiz trawl (3m, mesh-size 500µm), deployed in 16 stations during the ANTXXII/3 (ANDEEP3, PS72) expedition of the RV Polarstern. Sampling depth ranged from 1047 to 4931m. Trawling distance ranged from 731 to 3841m. The sampling area ranges from -41°S to -71°S (latitude) and from 0 to -65°W (longitude). A complete list of stations is available from the PANGAEA data system (http://www.pangaea.de/PHP/CruiseReports.php?b=Polarstern), including a cruise report (http://epic-reports.awi.de/3694/1/PE_72.pdf ). The dataset includes 50 records, with individual counts ranging from 1-10, reaching a total of 132 specimens. The andeep3-Asteroidea is a unique dataset as it covers an under-explored region of the Southern Ocean, and that very little information was available regarding Antarctic deep-sea starfish. Before this study, most of the information available focused on starfish from shallower depths than 1000m. This dataset allowed to make unique observations, such as the fact that some species were only present at very high depths (Hymenaster crucifer, Hymenaster pellucidus, Hymenaster praecoquis, Psilaster charcoti, Freyella attenuata, Freyastera tuberculata, Styrachaster chuni and Vemaster sudatlanticus were all found below -3770m), while others displayed remarkable eurybathy, with very high depths amplitudes (Bathybiaster loripes (4842m), Lysasterias adeliae (4832m), Lophaster stellans (4752m), Cheiraster planeta (4708m), Er- emicaster crassus (4626m), Lophaster gaini (4560m) and Ctenodiscus australis (4489m)). Even if the number of records is relatively small, the data bring many new insights on the taxonomic, bathymetric and geographic distributions of Southern starfish, covering a very large sampling zone. The dataset also brings to light six species, newly reported in the Southern Ocean. The quality of the data was controlled very thoroughly, by means of on-board Polarstern GPS sys- tems, checking of identification by a renowned specialist (Prof. Michel Jangoux, Université Libre de Brux- Copyright Bruno Danis et al. This is an open access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC- BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Sunday 15 July 12
- 47. Proof of concept ZooKeys 185: 73–78 (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition doi: 10.3897/zookeys.185.3078 DAtA PAPEr A peer-reviewed open-access journal 73 www.zookeys.org Launched to accelerate biodiversity research Antarctic Starfish (Echinodermata, Asteroidea) from the ANDEEP3 expedition Impact Factor: 0.514 Bruno Danis1, Michel Jangoux2, Jennifer Wilmes2 1 ANTABIF, 29, rue Vautier, 1000, Brussels, Belgium 2 Université Libre de Bruxelles, 50, av FD Roosevelt, 1050, Brussels, Belgium Corresponding author: Bruno Danis (bruno.danis@gmail.com) Academic editor: Vishwas Chavan | Received 13 March 2012 | Accepted 18 April 2012 | Published 23 April 2012 Citation: Danis B, Jangoux M, Wilmes J (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition. ZooKeys 185: 73–78. doi: 10.3897/zookeys.185.3078 Abstract This dataset includes information on sea stars collected during the ANDEEP3 expedition, which took place in 2005. The expedition focused on deep-sea stations in the Powell Basin and Weddell Sea. Sea stars were collected using an Agassiz trawl (3m, mesh-size 500µm), deployed in 16 stations during the ANTXXII/3 (ANDEEP3, PS72) expedition of the RV Polarstern. Sampling depth ranged from 1047 to 4931m. Trawling distance ranged from 731 to 3841m. The sampling area ranges from -41°S to -71°S (latitude) and from 0 to -65°W (longitude). A complete list of stations is available from the PANGAEA data system (http://www.pangaea.de/PHP/CruiseReports.php?b=Polarstern), including a cruise report (http://epic-reports.awi.de/3694/1/PE_72.pdf ). The dataset includes 50 records, with individual counts ranging from 1-10, reaching a total of 132 specimens. The andeep3-Asteroidea is a unique dataset as it covers an under-explored region of the Southern Ocean, and that very little information was available regarding Antarctic deep-sea starfish. Before this study, most of the information available focused on starfish from shallower depths than 1000m. This dataset allowed to make unique observations, such as the fact that some species were only present at very high depths (Hymenaster crucifer, Hymenaster pellucidus, Hymenaster praecoquis, Psilaster charcoti, Freyella attenuata, Freyastera tuberculata, Styrachaster chuni and Vemaster sudatlanticus were all found below -3770m), while others displayed remarkable eurybathy, with very high depths amplitudes (Bathybiaster loripes (4842m), Lysasterias adeliae (4832m), Lophaster stellans (4752m), Cheiraster planeta (4708m), Er- emicaster crassus (4626m), Lophaster gaini (4560m) and Ctenodiscus australis (4489m)). Even if the number of records is relatively small, the data bring many new insights on the taxonomic, bathymetric and geographic distributions of Southern starfish, covering a very large sampling zone. The dataset also brings to light six species, newly reported in the Southern Ocean. The quality of the data was controlled very thoroughly, by means of on-board Polarstern GPS sys- tems, checking of identification by a renowned specialist (Prof. Michel Jangoux, Université Libre de Brux- Copyright Bruno Danis et al. This is an open access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC- BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Sunday 15 July 12
- 48. afg. biodiversity.aq • Identification aid • High quality (useful) pictures • Expert Descriptions • Built on-the-fly from various sources • Generates a pdf for taxa/area of interest Sunday 15 July 12
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- 53. atlas.biodiversity.aq • Biogeographic Atlas of the Southern Ocean Sunday 15 July 12
- 54. atlas.biodiversity.aq • Biogeographic Atlas of the Southern Ocean • Redo of Hedgepeth 1969 Folio Sunday 15 July 12
- 55. atlas.biodiversity.aq • Biogeographic Atlas of the Southern Ocean • Redo of Hedgepeth 1969 Folio • Predictive approach Sunday 15 July 12
- 56. atlas.biodiversity.aq • Biogeographic Atlas of the Southern Ocean • Redo of Hedgepeth 1969 Folio • Predictive approach • Static and dynamic versions Sunday 15 July 12
- 57. atlas.biodiversity.aq • Biogeographic Atlas of the Southern Ocean • Redo of Hedgepeth 1969 Folio • Predictive approach • Static and dynamic versions • Modelization loops are ready Sunday 15 July 12
- 58. Slope 94 Interpolated data layers Bathymetry Chlorophyll Distance to the continent Distance to bird colonies Distance to ice Distance to shelf Distance to canyon Floor temperature ... + ANTABIF Occurrence records Sunday 15 July 12
- 59. Slope 94 Interpolated data layers Bathymetry Chlorophyll Distance to the continent Distance to bird colonies Distance to ice Distance to shelf Distance to canyon Floor temperature ... + ANTABIF Occurrence records Sunday 15 July 12
- 60. Slope 94 Interpolated data layers Bathymetry Chlorophyll Distance to the continent Distance to bird colonies Distance to ice Distance to shelf Distance to canyon Floor temperature ... + ANTABIF Occurrence records Sunday 15 July 12
- 61. R-functions GUI forBRT and GDM Sunday 15 July 12
- 62. R-functions GUI forBRT and GDM Sunday 15 July 12
- 63.
- 64. mARS.biodiversity.aq • Microbial Antarctic Resource System Sunday 15 July 12
- 65. mARS.biodiversity.aq • Microbial Antarctic Resource System • The organisms are small… but their environmental impacts are critical to many Antarctic ecosystems Sunday 15 July 12
- 66. mARS.biodiversity.aq • Microbial Antarctic Resource System • The organisms are small… but their environmental impacts are critical to many Antarctic ecosystems • They are the dominant and most diverse form of life in the oceans and in the various microbial habitats on the continent Sunday 15 July 12
- 67. mARS.biodiversity.aq • Microbial Antarctic Resource System • The organisms are small… but their environmental impacts are critical to many Antarctic ecosystems • They are the dominant and most diverse form of life in the oceans and in the various microbial habitats on the continent • Access to their diversity is becoming cost-effective and increasing exponentially Sunday 15 July 12
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- 69. mars.biodiversity.aq • Integrate Antarctic microbial DNA sequence data in ANTABIF Sunday 15 July 12
- 70. mars.biodiversity.aq • Integrate Antarctic microbial DNA sequence data in ANTABIF • Phased approach: Sunday 15 July 12
- 71. mars.biodiversity.aq • Integrate Antarctic microbial DNA sequence data in ANTABIF • Phased approach: Step 0: data description and discovery Sunday 15 July 12
- 72. mars.biodiversity.aq • Integrate Antarctic microbial DNA sequence data in ANTABIF • Phased approach: Step 0: data description and discovery Step 1: microbial sequence and habitat metadata Sunday 15 July 12
- 73. mars.biodiversity.aq • Integrate Antarctic microbial DNA sequence data in ANTABIF • Phased approach: Step 0: data description and discovery Step 1: microbial sequence and habitat metadata Step 2: sequence data Sunday 15 July 12
- 74. mars.biodiversity.aq • Integrate Antarctic microbial DNA sequence data in ANTABIF • Phased approach: Step 0: data description and discovery Step 1: microbial sequence and habitat metadata Step 2: sequence data Step 3: batch sequence data processing Sunday 15 July 12
- 75. mars.biodiversity.aq • Integrate Antarctic microbial DNA sequence data in ANTABIF • Phased approach: Step 0: data description and discovery Step 1: microbial sequence and habitat metadata Step 2: sequence data Step 3: batch sequence data processing Step 4: customized sequence data processing Sunday 15 July 12
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- 77. mARS.biodiversity.aq • Potential applications: Sunday 15 July 12
- 78. mARS.biodiversity.aq • Potential applications: Is there a biogeography of Antarctic microbes? Sunday 15 July 12
- 79. mARS.biodiversity.aq • Potential applications: Is there a biogeography of Antarctic microbes? Document Antarctic bioprospecting activities Sunday 15 July 12
- 80. mARS.biodiversity.aq • Potential applications: Is there a biogeography of Antarctic microbes? Document Antarctic bioprospecting activities Assess bioindicating value of microbial diversity as early warning system of ecosystems shifts Sunday 15 July 12
- 81. In the pipeline Sunday15 July 12
- 82. in the pipeline • Interactive Identification keys • Spatially explicit gazetteer • Genomics/Proteomics (mARS paving the way) • Expeditions DBs • more... Sunday 15 July 12
- 83. Thanks and questions? @biodiversityaq image © NY Times Sunday 15 July 12