This document provides an overview of the principles of virology course taught by Dr. Fahed Parvaiz. It discusses key topics that will be covered in the course including the nature of viruses, their diversity, areas of study in virology, and ways that viruses can be both pathogenic and beneficial. Specifically, it notes that viruses are microscopic obligate intracellular parasites that contain genes and replicate inside host cells, making them dependent on their hosts.

1. PRINCIPLES OF
VIROLOGY
(BSC-401)
Instructor: Fahed Parvaiz, Ph.D
CAS-PIFI Fellow
Post-Doc (Virology & Immunology)

2. Introduction to virology
• Viruses are ubiquitous on earth.
• Infect all cellular forms i.e. Prokaryotes and
Eukaryotes.
• Upon infection…typical symptoms.
• Some viruses are non-pathogenic.
• Some are active while some are in quiescent
phase.
• Some contain remnants of host genomes

3. What is a virus?
1) Submicroscopic, obligate intracellular parasite.
2) Particles are produced from assembly of pre-formed
components.
3) Virus particles (virions) themselves do not grow or
undergo division.
4) They do not encode information for:
a- energy production
b- ribosomes
c-tRNAs (a few exceptions)
d- lipid membrane synthesis

4. Virus diversity:
From the beautiful….
Three Broken Tulips
By Nicolas Robert
(1624-1685)
Striping patterns on
tulips caused by tulip
mosaic virus infection.

5. …to the down right nasty!
Smallpox lesions in a child

6. This knowledge permits the development
of effective means for prevention,
diagnosis and treatment of virus diseases
through the production of vaccines,
diagnostic reagents and techniques, and
antiviral drugs. These medical
applications therefore constitute major
aspects of the science of virology.

7. • Important factors to be studied in virology:
i. Nature
ii. Gene expression (Transcription and Translation)
iii. Mode of replication
iv. Cellular internalization
v. Interaction with host cellular factors/ proteins
vi. Host defense mechanisms
vii. Mechanism of pathogenesis
viii. Virus egress

8. Other areas of virology
• Veterinary virology and plant virology are also important
because of the economic impact of the many viruses that
cause disease in domestic animals and crop plants: foot
and mouth disease virus and rice yellow mottle virus are
just two examples.
• Another area where viruses can cause economic damage
is in the dairy industry, where phages can infect the lactic
acid bacteria that are responsible for the fermentations
that produce cheese, yogurt and other milk products.

9. Virus: A beneficial creature
1. Phage typing of bacteria
2. Enzyme production
3. Pesticides
4. Anti-bacterial agents
5. Anti-cancer agents
6. Gene vectors

10. 1. Phage typing of bacteria
• Some groups of bacteria, such as Salmonella species, are
classified into strains on the basis of the spectrum of phages
to which they are susceptible.
• Identification of the phage types of bacterial isolates can
provide useful epidemiological information during outbreaks
of disease caused by these bacteria.

12. 2. Enzyme production
A number of enzymes used in molecular biology
are virus enzymes.
 Examples:
Reverse transcriptase from retroviruses.
RNA polymerases from phages

13. 3. Pesticides
 Some insect pests are controlled with
baculoviruses and myxoma virus.

14. 4. Anti-bacterial agents
• Initially, bacteriophages were harvested for the
treatment of bacterial infections.
• Discovery of Antibiotics & eventually emergence of
drug resistant bacterial strains.
• Bacteriophages.

15. 5. Anti-Cancer agents
• Genetically modified strains of viruses, such as herpes simplex
virus and vaccinia virus, are being investigated for treatment
of cancers.
• These strains have been modified so that they are able to
infect and destroy specific tumour cells, but are unable to
infect normal cells.

16. 6. Gene vectors for protein production
• Viruses such as certain baculoviruses and
adenoviruses are used as vectors to take genes into
animal cells growing in culture. This technology can
be used to insert into cells genes encoding useful
proteins, such as vaccine components, and the cells
can then be used for mass production of the
proteins.

17. Addgene, Repository for Vectors

18. Nature of viruses
• Microscopic particles
• Contain genes
• Parasites

19. 1) Viruses are microscopic
particles
• Evidence for the existence of very small infectious agents was first
provided in the late 19th century by two scientists working independently:
Martinus Beijerinck in Holland and Dimitri Ivanovski in Russia. They made
extracts from diseased plants, which we now know were infected with
tobacco mosaic virus, and passed the extracts through fine filters. The
filtrates contained an agent that was able to infect new plants, but no
bacteria could be cultured from the filtrates. The agent remained infective
through several transfers to new plants, eliminating the possibility of a
toxin. Beijerinck called the agent a ‘virus’ and the term has been in use
ever since.

20. • Mainly measured in nm.
• Smallest group of viruses include parvoviruses (20nm).
• Virology concerns with smallest yet among diverse group of
microbes.

21. 2) Viruses contain genes
• Considered to be living primarily because of: DNA/RNA
and its replication.
• Mainly four different possibilties:
• double-stranded DNA
• single-stranded DNA
• double-stranded RNA
• single-stranded RNA.

22. • Genome: The genomic content of the virus together
makes up its genome.
• Capsid: The viral coating that protects its genome and
helps in the host viral interaction is known as capsid.
• Virion: The combination of viral genome, capsid and
other replication machinery together constitute Virion.

23. Viruses are extensively tiny yet favor
pathogenesis. How?
• There are several mechanisms:
i. Harboring host cell proteins
ii. Efficient coding
iii. Multifunctional proteins

24. i. Harboring host cell proteins
The genomes of large viruses duplicate
some of the functions of the host cell, but
the small viruses rely very heavily on
functions of the host cell.

25. ii. Efficient coding
There may be overlapping genes and genes
encoded within genes. The small genome of
Hepatitis B virus is a good example

26. iii. Multifunctional proteins
A virus protein may have several enzyme
activities.

27. 3. Viruses are parasites
Viruses differ from cells in the way in which they
multiply. A new cell is always formed directly from a
pre-existing cell, but a new virion is never formed
directly from a pre-existing virion. New virions are
formed by a process of replication, which takes place
inside a host cell and involves the synthesis of
components followed by their assembly into virions.

28. Contd…
• Viruses are therefore parasites of cells, and are dependent on
their hosts for most of their requirements, including:
1. Building-blocks such as amino acids and nucleotides.
2. Protein-synthesizing machinery (ribosomes).
3. Energy, in the form of Adenosine triphosphate.

29. Contd…
A virus modifies the intracellular environment of its host in
order to enhance the efficiency of the replication process.
Modifications might include production of new membranous
structures, reduced expression of cell genes or enhancement
of a cell process. Some large phages encode proteins that
boost photosynthesis in the cells of their photosynthetic
bacterial hosts, thereby probably boosting the yields of virus
from the cells

30. “There is nothing so patient, in this world
or any other, as a virus searching for a
host.”
Mira Grant