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Medical Chemistry
Lecture 1
PhD Marika Shavlakadze
2021
•Syllabus presentation
•Introduction to assessment system
•General overview of the subject
Lecture 1 hr
The electronic structure of Atoms; The dual nature of the electron;
Quantum mechanical description of the hydrogen atom; quantum
numbers; Atomic orbitals; Electron configuration; The shielding
effect in many-electron atoms.
Seminar1hr: The principal quantum number; The angular
momentum quantum number; The magnetic quantum number; The
electron spin quantum number;
s-,p-,d-,f- orbitals; The energies of orbitals; The Pauli exclusive
principle; Hund’s rule
Medical chemistry
1. General Chemistry the essential concepts Raymond chang, Jason Overby. USA-New
York.2011
2.Klein D. - Organic chemistry Student study guide and solutions manual. John Wiley &
Sons, Inc 2012.
What is Medical Chemistry?
The electronic structure of Atoms;
The dual nature of the electron;
Quantum mechanical description of the hydrogen atom;
Quantum numbers;
Atomic orbitals;
Electron configuration;
The shielding effect in many-electron atoms.
The Study of Chemistry
• chemistry is the study of matter and the
changes it undergoes;
• Matter is anything that occupies space and
has mass
• All matter is composed of discrete, tiny
particles called atoms.
Atoms, Elements, Compounds, and Ions
• Atom
• basic building block of all matter
• Element
•Substance that consists of only one type of atom.
•Molecule has two different atoms.
• Compound
• substance that consists of more than one type of element.
• Ion
• substance that has a positive or negative charge
Atoms have:
• A nucleus
• small, heavy part of the atom
•An electron cloud
• large, lightweight part of the atom
Nucleus Electron Cloud
Nucleus of an Atom
• Nucleus contains:
N
• Protons
• Have a positive charge
• All atoms are distinguished by
the number of protons it
has (atomic number)
• Neutrons
• Have no charge
• Have same mass as
protons
N
N
e-
e-
Electron Cloud of an Atom
An electron cloud contains:
• Electrons
• determine bonding properties of
substance
• have a very small mass compared to
protons and neutrons
• orbit the nucleus of the atom
• are contained within shells of the
electron cloud
• have a negative charge
The symbols, relative mass and
the charge of subatomic particles
Subatomic
particle
Symbol Relative
mass
Charge
Proton p 1 +1
Electron e -1
Neutron n 1 0
1840
1
Isotopes
Atoms of the same element always have the same number of
protons. However they may have different numbers of
neutrons. There are known as isotopes. Carbon has two
isotopes:
C C
6
14
6
12
Write down the number of protons, neutrons and electrons
in the two isotopes of carbon
Carbon-12 Carbon-14
Isotopes
+
+ +
+
+
+
Nucleus
Electrons
Nucleus
Neutron
Proton
Carbon-12
Neutrons 6
Protons 6
Electrons 6
Nucleus
Electrons
Carbon-14
Neutrons 8
Protons 6
Electrons 6
+
+
+
+
+
+
Nucleus
Neutron
Proton
Bohr’s Model of the Atom
• Einstein’s theory of light’s dual nature
accounted for several unexplainable
phenomena, but it did not explain why
atomic emission spectra of elements were
discontinuous.
Bohr’s Model of the Atom
• In 1913, Niels Bohr, a Danish physicist working
in Rutherford’s laboratory, proposed a
quantum model for the hydrogen atom that
seemed to answer this question.
– This model correctly predicted the frequency lines
in hydrogen’s atomic emission spectrum.
Bohr’s Model of the Atom
• The lowest allowable energy state of an atom
is called its ground state.
• When an atom gains energy, it is in an excited
state.
Bohr’s Model of the Atom
• Bohr suggested that an electron moves
around the nucleus only in certain allowed
circular orbits.
Bohr’s Model of the Atom
• Each orbit was given a number,
called the quantum number.
– Bohr orbits are like steps of a ladder,
each at a specific distance from the
nucleus and each at a specific energy.
Bohr’s Model of the Atom
• The electron releases energy as it falls back
towards the ground state.
Quantum Mechanical Model
• Louis de Broglie (1892–1987) hypothesized
that particles, including electrons, could also
have wavelike behaviors.
– Electrons do not behave like particles flying
through space.
• We cannot, in general, describe their exact paths.
Quantum Mechanical Model
• Heisenberg showed it is impossible to take any
measurement of an object without disturbing
it.
• The Heisenberg uncertainty principle states
that it is fundamentally impossible to know
precisely both the velocity and position of a
particle at the same time.
Quantum Mechanical Model
• The only quantity that can be known is the
probability for an electron to occupy a certain
region around the nucleus.
Quantum Mechanical Model
• Schrödinger treated electrons as waves in a
model called the quantum mechanical model
of the atom.
– Schrödinger’s equation applied equally well to
elements other than hydrogen (unlike Bohr’s
model).
Quantum Mechanical Model
• The quantum mechanical model makes no
attempt to predict the path of an electron
around the nucleus.
– Bohr orbits were replaced with quantum-
mechanical orbitals.
Quantum Mechanical Model
• Orbitals are different from orbits in that
they represent probability maps that
show a statistical distribution of where
the electron is likely to be found.
Hydrogen’s Atomic Orbitals
• s sublevel:
• p sublevel:
• d sublevel:
• f sublevel:
Lecture 1   medical Chemistry.pptxxfjxfjfjcf
Lecture 1   medical Chemistry.pptxxfjxfjfjcf
Lecture 1   medical Chemistry.pptxxfjxfjfjcf
Lecture 1   medical Chemistry.pptxxfjxfjfjcf
Lecture 1   medical Chemistry.pptxxfjxfjfjcf
Lecture 1   medical Chemistry.pptxxfjxfjfjcf
Lecture 1   medical Chemistry.pptxxfjxfjfjcf
Lecture 1   medical Chemistry.pptxxfjxfjfjcf
Lecture 1   medical Chemistry.pptxxfjxfjfjcf
Lecture 1   medical Chemistry.pptxxfjxfjfjcf
Lecture 1   medical Chemistry.pptxxfjxfjfjcf
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Lecture 1   medical Chemistry.pptxxfjxfjfjcf
Lecture 1   medical Chemistry.pptxxfjxfjfjcf
Lecture 1   medical Chemistry.pptxxfjxfjfjcf
Lecture 1   medical Chemistry.pptxxfjxfjfjcf
Lecture 1   medical Chemistry.pptxxfjxfjfjcf
Lecture 1   medical Chemistry.pptxxfjxfjfjcf
Lecture 1   medical Chemistry.pptxxfjxfjfjcf
Lecture 1   medical Chemistry.pptxxfjxfjfjcf
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Lecture 1 medical Chemistry.pptxxfjxfjfjcf

  • 1. Medical Chemistry Lecture 1 PhD Marika Shavlakadze 2021
  • 2. •Syllabus presentation •Introduction to assessment system •General overview of the subject Lecture 1 hr The electronic structure of Atoms; The dual nature of the electron; Quantum mechanical description of the hydrogen atom; quantum numbers; Atomic orbitals; Electron configuration; The shielding effect in many-electron atoms. Seminar1hr: The principal quantum number; The angular momentum quantum number; The magnetic quantum number; The electron spin quantum number; s-,p-,d-,f- orbitals; The energies of orbitals; The Pauli exclusive principle; Hund’s rule
  • 3. Medical chemistry 1. General Chemistry the essential concepts Raymond chang, Jason Overby. USA-New York.2011 2.Klein D. - Organic chemistry Student study guide and solutions manual. John Wiley & Sons, Inc 2012.
  • 4.
  • 5. What is Medical Chemistry? The electronic structure of Atoms; The dual nature of the electron; Quantum mechanical description of the hydrogen atom; Quantum numbers; Atomic orbitals; Electron configuration; The shielding effect in many-electron atoms.
  • 6. The Study of Chemistry • chemistry is the study of matter and the changes it undergoes; • Matter is anything that occupies space and has mass • All matter is composed of discrete, tiny particles called atoms.
  • 7. Atoms, Elements, Compounds, and Ions • Atom • basic building block of all matter • Element •Substance that consists of only one type of atom. •Molecule has two different atoms. • Compound • substance that consists of more than one type of element. • Ion • substance that has a positive or negative charge
  • 8. Atoms have: • A nucleus • small, heavy part of the atom •An electron cloud • large, lightweight part of the atom Nucleus Electron Cloud
  • 9. Nucleus of an Atom • Nucleus contains: N • Protons • Have a positive charge • All atoms are distinguished by the number of protons it has (atomic number) • Neutrons • Have no charge • Have same mass as protons N N
  • 10. e- e- Electron Cloud of an Atom An electron cloud contains: • Electrons • determine bonding properties of substance • have a very small mass compared to protons and neutrons • orbit the nucleus of the atom • are contained within shells of the electron cloud • have a negative charge
  • 11.
  • 12. The symbols, relative mass and the charge of subatomic particles Subatomic particle Symbol Relative mass Charge Proton p 1 +1 Electron e -1 Neutron n 1 0 1840 1
  • 13.
  • 14.
  • 15.
  • 16. Isotopes Atoms of the same element always have the same number of protons. However they may have different numbers of neutrons. There are known as isotopes. Carbon has two isotopes: C C 6 14 6 12 Write down the number of protons, neutrons and electrons in the two isotopes of carbon Carbon-12 Carbon-14
  • 17. Isotopes + + + + + + Nucleus Electrons Nucleus Neutron Proton Carbon-12 Neutrons 6 Protons 6 Electrons 6 Nucleus Electrons Carbon-14 Neutrons 8 Protons 6 Electrons 6 + + + + + + Nucleus Neutron Proton
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  • 65. Bohr’s Model of the Atom • Einstein’s theory of light’s dual nature accounted for several unexplainable phenomena, but it did not explain why atomic emission spectra of elements were discontinuous.
  • 66. Bohr’s Model of the Atom • In 1913, Niels Bohr, a Danish physicist working in Rutherford’s laboratory, proposed a quantum model for the hydrogen atom that seemed to answer this question. – This model correctly predicted the frequency lines in hydrogen’s atomic emission spectrum.
  • 67.
  • 68. Bohr’s Model of the Atom • The lowest allowable energy state of an atom is called its ground state. • When an atom gains energy, it is in an excited state.
  • 69. Bohr’s Model of the Atom • Bohr suggested that an electron moves around the nucleus only in certain allowed circular orbits.
  • 70. Bohr’s Model of the Atom • Each orbit was given a number, called the quantum number. – Bohr orbits are like steps of a ladder, each at a specific distance from the nucleus and each at a specific energy.
  • 71. Bohr’s Model of the Atom • The electron releases energy as it falls back towards the ground state.
  • 72. Quantum Mechanical Model • Louis de Broglie (1892–1987) hypothesized that particles, including electrons, could also have wavelike behaviors. – Electrons do not behave like particles flying through space. • We cannot, in general, describe their exact paths.
  • 73. Quantum Mechanical Model • Heisenberg showed it is impossible to take any measurement of an object without disturbing it. • The Heisenberg uncertainty principle states that it is fundamentally impossible to know precisely both the velocity and position of a particle at the same time.
  • 74.
  • 75. Quantum Mechanical Model • The only quantity that can be known is the probability for an electron to occupy a certain region around the nucleus.
  • 76. Quantum Mechanical Model • Schrödinger treated electrons as waves in a model called the quantum mechanical model of the atom. – Schrödinger’s equation applied equally well to elements other than hydrogen (unlike Bohr’s model).
  • 77. Quantum Mechanical Model • The quantum mechanical model makes no attempt to predict the path of an electron around the nucleus. – Bohr orbits were replaced with quantum- mechanical orbitals.
  • 78. Quantum Mechanical Model • Orbitals are different from orbits in that they represent probability maps that show a statistical distribution of where the electron is likely to be found.
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