An unidentified frog was observed by Jack Corbo while on a 2000 expedition to the recently explored portion of the Bladen Nature Reserve, Belize, Central America.
Aquatic Insect Similarity Connecting Natural Wetland Habitat and Ricefield fo...Innspub Net
This study describes the relationship of the natural wetland habitats in Agusan Marsh to nearby rice fields and its implication to ecological rice production. Aquatic insects play multiple roles in the ecosystem such as predators, prey to other animals and decomposers which help in maintaining ecological balance. Results revealed that the diversity of odonates was highest in the sedge-dominated swamp among natural habitats which corresponds to the adjoining ricefields. The pattern of clustering of odonates show 3 groups; the rice-sago and rice-sedges sub-cluster, the rice-bangkal, rice-Terminalia, rice-fern, bangkal, sago and sedges sub-cluster, and the Terminalia forest as the outlier. The diversity of semi-aquatic and aquatic bugs was highest in the Bangkal forest while the lowest was in the fern-dominated swamp. The pattern of clustering shows 2 sub-clusters and the outlier Bangkal forest. On aquatic beetles, highest diversity was in the Terminalia forest. The sub-cluster consists of Terminalia habitat and rice-fern, while the other sub-cluster includes rice-Bangkal and rice-Terminalia. The resulting patterns of similarity in diversity and distribution of species in natural habitats and nearby ricefields indicate that ricefields are important temporary habitats for some aquatic insect species and serve as stepping stones for the movement of the insects.
Trends in Macrophyte Diversity in Anthropogenic Perturbed Lentic Ecosystems w...Premier Publishers
Aquatic macrophytes hold several niches within the ecosystem, including inter alia water purification, carbon sequestration and serve as microhabitats for aquatic insects. These dynamic roles make macrophytes good indicators of current environmental conditions. Hence assessing their abundance in line with wetland ecosystem dynamics and function is essential. Frequency of occurrence and density values were estimated, using twenty (20) 2 m x 2 m quadrats for each macrophyte encountered. The results of the study revealed twenty-one (21) macrophytes belonging to 16 families. These ponds varied markedly in terms of species composition and in numerical strength such that Polygonum lanigerum (1143+175st/ha), Setaria verticillata (337.5+ 32.8st/ha), Azolla pinnata (337.7+ 16.4 st/ha) recorded high density values while Lagenaria breviflora (18.7±2.19), Sida acuta (18.75±5.30), Ludwigia erecta (18.7±0.15) and Milletia aboensis (18.7±0.03) were the least abundant species. Pond A and D with 11 taxa each had the higher Shannon-Wiener (2.192, 2.214) and Simpson (0.8699, 0.8787) diversity indices respectively when compared to the other ponds. On the contrary, pond C with four taxa had the least Shannon-Wiener and Simpson diversity indices (1.253, 0.6782) respectively. Equitability and evenness ranged between 0.914 - 0. 952 and 0.814 - 0.900 respectively. Bray and Curtis cluster analysis showed that pond B was the most dissimilar compared to other ponds in terms of the taxa composition.
Domestication of Lais (Ompok hypopthalmus) in the Fishpond as a Sustainable C...Premier Publishers
The research was done in concrete fishponds owned by the community and the other owned the Laboratory of the Faculty of Fishery of the Christian University of Palangka Raya, Central Kalimantan. The Lais were domesticated coming from the Rungan river of Palangka Raya city. The research was done in March throhh July 2016. The study was conducted in two stages, the first stage of research to engineer Lais fish maintenance environment on plakstik pond and the second stage to engineer the feed so that the fish can adapt and grow. The parameters observed were: fish growth, survival, food conversion and water quality (temperature, DO, pH, depth), as well as the development of Lais fish gonads. The sample of test fish is 200 fish, each pond is 50 tails per pond. The virtues of this study were to engineer the Lais fish feed and adaptation time of the fish in new maintenance environments as well as adaptation to artificial foods that promote the hormonal growth of Lais fish. Innovation of environmental engineering cultivation and adaptation of artificial feed for the development of fish gonad. Lais fish farming technology can be applied by freshwater fish farmers.
Aquatic Insect Similarity Connecting Natural Wetland Habitat and Ricefield fo...Innspub Net
This study describes the relationship of the natural wetland habitats in Agusan Marsh to nearby rice fields and its implication to ecological rice production. Aquatic insects play multiple roles in the ecosystem such as predators, prey to other animals and decomposers which help in maintaining ecological balance. Results revealed that the diversity of odonates was highest in the sedge-dominated swamp among natural habitats which corresponds to the adjoining ricefields. The pattern of clustering of odonates show 3 groups; the rice-sago and rice-sedges sub-cluster, the rice-bangkal, rice-Terminalia, rice-fern, bangkal, sago and sedges sub-cluster, and the Terminalia forest as the outlier. The diversity of semi-aquatic and aquatic bugs was highest in the Bangkal forest while the lowest was in the fern-dominated swamp. The pattern of clustering shows 2 sub-clusters and the outlier Bangkal forest. On aquatic beetles, highest diversity was in the Terminalia forest. The sub-cluster consists of Terminalia habitat and rice-fern, while the other sub-cluster includes rice-Bangkal and rice-Terminalia. The resulting patterns of similarity in diversity and distribution of species in natural habitats and nearby ricefields indicate that ricefields are important temporary habitats for some aquatic insect species and serve as stepping stones for the movement of the insects.
Trends in Macrophyte Diversity in Anthropogenic Perturbed Lentic Ecosystems w...Premier Publishers
Aquatic macrophytes hold several niches within the ecosystem, including inter alia water purification, carbon sequestration and serve as microhabitats for aquatic insects. These dynamic roles make macrophytes good indicators of current environmental conditions. Hence assessing their abundance in line with wetland ecosystem dynamics and function is essential. Frequency of occurrence and density values were estimated, using twenty (20) 2 m x 2 m quadrats for each macrophyte encountered. The results of the study revealed twenty-one (21) macrophytes belonging to 16 families. These ponds varied markedly in terms of species composition and in numerical strength such that Polygonum lanigerum (1143+175st/ha), Setaria verticillata (337.5+ 32.8st/ha), Azolla pinnata (337.7+ 16.4 st/ha) recorded high density values while Lagenaria breviflora (18.7±2.19), Sida acuta (18.75±5.30), Ludwigia erecta (18.7±0.15) and Milletia aboensis (18.7±0.03) were the least abundant species. Pond A and D with 11 taxa each had the higher Shannon-Wiener (2.192, 2.214) and Simpson (0.8699, 0.8787) diversity indices respectively when compared to the other ponds. On the contrary, pond C with four taxa had the least Shannon-Wiener and Simpson diversity indices (1.253, 0.6782) respectively. Equitability and evenness ranged between 0.914 - 0. 952 and 0.814 - 0.900 respectively. Bray and Curtis cluster analysis showed that pond B was the most dissimilar compared to other ponds in terms of the taxa composition.
Domestication of Lais (Ompok hypopthalmus) in the Fishpond as a Sustainable C...Premier Publishers
The research was done in concrete fishponds owned by the community and the other owned the Laboratory of the Faculty of Fishery of the Christian University of Palangka Raya, Central Kalimantan. The Lais were domesticated coming from the Rungan river of Palangka Raya city. The research was done in March throhh July 2016. The study was conducted in two stages, the first stage of research to engineer Lais fish maintenance environment on plakstik pond and the second stage to engineer the feed so that the fish can adapt and grow. The parameters observed were: fish growth, survival, food conversion and water quality (temperature, DO, pH, depth), as well as the development of Lais fish gonads. The sample of test fish is 200 fish, each pond is 50 tails per pond. The virtues of this study were to engineer the Lais fish feed and adaptation time of the fish in new maintenance environments as well as adaptation to artificial foods that promote the hormonal growth of Lais fish. Innovation of environmental engineering cultivation and adaptation of artificial feed for the development of fish gonad. Lais fish farming technology can be applied by freshwater fish farmers.
11/2/2014
1
Community Ecology I
Stability, Resilience
WFC 10 – D. A. Kelt
A biological community is defined by the species that occupy a
particular locality and the interactions among those species.
A Primer of Conservation Biology, 3rd ed. R. B. Primack 2004
Community Ecology is the study of biological communities.
In what ways are communities organized, structured, predictable?
In what ways are they not?
Note the difference between “habitat” and “community.”
The former refers to a physical location,
whereas the latter refers to constituent species.
Many communities may appear very similar.
Coniferous Forest
near Mt. Rainier
central Oregon
King’s Canyon National Park
Sandy Desert
Sahara Desert
Simpson Desert (Australia)
Death Valley, California
Thus, there may be great variation
from point to point in these
communities
One major way in which they differ is
in composition – the particular species
that occur at a site.
Example: Burrowing
mammals
N. Amer. - Gopher
Asia - Zokor
Australia – Marsupial mole
S. Amer. – Tuco tuco
Africa – Mole rat
Ecologically similar species in different
regions with different evolutionary origins.
N. Amer. - Gopher
Asia - Zokor
Australia – Marsupial mole
S. Amer. – Tuco tuco
Africa – Mole rat
11/2/2014
2
Often true at smaller spatial scales as well . . .
Geomys
Eastern Pocket Gophers
Cratogeomys
Yellow-faced Pocket Gophers
Pappogeomys
Southern Pocket Gophers
Thomomys
Western Pocket Gophers
4 genera of North American
pocket gophers
From a conservation perspective we are interested in how
stable a community is in the face of anthropogenic abuses.
Stability – often portrayed in simple cartoon fashion as follows:
So, given all this variation, how are communities structured,
and how do they respond to disturbance?
Global Stability Local Stability
Stability may be measured by a community’s fluctuation over time.
Communities often remain stable over time.
However, they may be perturbed by some external force.
What happens then?
The American chestnut (Castanea dentata)
made up >40% of trees in mature eastern
deciduous forest.
Chestnut blight – introduced to New York City in ca. 1900
By 1950 only 1 remaining large tree in North America
What impact did this enormous loss have on
the biota of eastern North America?
Perhaps surprisingly, essentially no impact.
Eastern deciduous forests are very diverse – maples, oaks, hickories, catalpa, etc. Loss of American chestnut led to NO major changes in animal or plant communities.
Black bears may have suffered from loss of mast.
Thus, this was a relatively minor perturbation
from the perspective of the community – it
evidently shifted to a different local stable point.
Seven butterfly/moth species were specialists on
American chestnut, and have gone extinct.
Another 49 Lepidopterans simply shifted their hosts.
11/2/2014
3
Pollution – another
perturbation that can
result in ecological
deteriorat.
Extinct Jefferson Ground Sloth mitochondrial DNA (mtDNA)Jack Corbo
Ancient DNA (aDNA) of extinct Megalonyx jeffersonii that was native to eastern North America. The sequence is of the entire genome of the mitochondrial DNA (mtDNA)
Corrosion Publication by Jack Corbo and Hamid FarzamJack Corbo
Corbo, J. & Farzam, H., "Influence of Three Commonly Used Inorganic Compounds on the Pore Solution Chemistry and Their Possible Implications to the Corrosion of Steel in Concrete." ACI Materials Journal, 85(5), November-October 1989, pp 498- 502.
Corrosion Publication by Dr. Charles Nmai and Jack CorboJack Corbo
Nmai, C. & Corbo, J., "Sodum Thiocyaniate and the Corrosion Potential of Steel in Concrete and Mortar," Concrete International, 11(11), Nov. 1989, pp. 59-67.
NFL Concussion Litigation Settlement (letter sent to family of Tom Corbo) Jack Corbo
This is a summary of the Concussion Litigation Settlement class action suit against the US National Football League (NFL). This letter was sent to all immediate family members of Tom Corbo who played for the 1944 NFL Cleveland Rams and died of possible health related causes in 2000.
van Keulen and Lindmark Viticulture (wine) Research, 2001Jack Corbo
Cleveland Stater 2001 article about the viticulture (wine) research of molecular biologist Dr. Harry van Keulen (then advisor to Jack Corbo) and microbiologist Dr. Don Lindmark of Cleveland State University.
Corbo & McDonald 2016 Published Chelydra ManuscriptJack Corbo
"An Overview of the Paleoclimatic Influences on the Genetic Variation of Chelydra" published in the Bulletin of the Chicago Herpetological Society by Jack M. Corbo (MS) and Dr. H Greg McDonald, 51(7): 105-117, 2016. Author contributions: J.M.C. led the writing and conceived most of the ideas with some editing while H.G.M. led the editing with some writing and conceived some ideas. Cover art by Richard F. Deckert (1919) suggested and provided by Jack Corbo.
2002 CV of Dr. Peter Dunham (field advisor to Jack Corbo)Jack Corbo
Dr. Peter Dunham (Department of Anthropology) was the field advisor to Jack Corbo in his attempt to obtain a Ph.D. in molecular biology from the Department of Biology at Cleveland State University (1999-2005).
The Rosetta Stone was carved in 196 BC for Egyptian King Ptolemy V. .Rediscovered in 1799, the 114.4 x 72.3 x 27,9 cm (45 x 28.5 x 11 inch) granodiorite stone is unique in that it is inscribed with three written languages: Egyptian hieroglyphs, Demotic, and Greek script that all pronounce the same royal decree.
Rampart Cave discovered by Willis Evans in 1936 is a rare cavern used by the extinct Nothrotheriops shastensis (Shasta Ground Sloth). Paleontological excavations indicate that these megafauna inhabited the cave 36 kya.
Rampart Cave discovered in 1936 is located Grand Canyon National Park, Arizona. The rare cave was inhabited by Nothrotheriops shastensis (Shasta Ground Sloth) 13 kya and 36 kya. Paleontological excavations found deposits of this megafauna species at depths of 6 m (20 ft) deep. A majority consisted of dung deposits that gave the cave the smell of a horse stable. The dry dung was also combustible which tragically occurred in 1976. The cave could be considered a repository or archive of the ecology and the genetic change of N. shastensis over more than 30,000 years.
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...Sérgio Sacani
Since volcanic activity was first discovered on Io from Voyager images in 1979, changes
on Io’s surface have been monitored from both spacecraft and ground-based telescopes.
Here, we present the highest spatial resolution images of Io ever obtained from a groundbased telescope. These images, acquired by the SHARK-VIS instrument on the Large
Binocular Telescope, show evidence of a major resurfacing event on Io’s trailing hemisphere. When compared to the most recent spacecraft images, the SHARK-VIS images
show that a plume deposit from a powerful eruption at Pillan Patera has covered part
of the long-lived Pele plume deposit. Although this type of resurfacing event may be common on Io, few have been detected due to the rarity of spacecraft visits and the previously low spatial resolution available from Earth-based telescopes. The SHARK-VIS instrument ushers in a new era of high resolution imaging of Io’s surface using adaptive
optics at visible wavelengths.
(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...Scintica Instrumentation
Intravital microscopy (IVM) is a powerful tool utilized to study cellular behavior over time and space in vivo. Much of our understanding of cell biology has been accomplished using various in vitro and ex vivo methods; however, these studies do not necessarily reflect the natural dynamics of biological processes. Unlike traditional cell culture or fixed tissue imaging, IVM allows for the ultra-fast high-resolution imaging of cellular processes over time and space and were studied in its natural environment. Real-time visualization of biological processes in the context of an intact organism helps maintain physiological relevance and provide insights into the progression of disease, response to treatments or developmental processes.
In this webinar we give an overview of advanced applications of the IVM system in preclinical research. IVIM technology is a provider of all-in-one intravital microscopy systems and solutions optimized for in vivo imaging of live animal models at sub-micron resolution. The system’s unique features and user-friendly software enables researchers to probe fast dynamic biological processes such as immune cell tracking, cell-cell interaction as well as vascularization and tumor metastasis with exceptional detail. This webinar will also give an overview of IVM being utilized in drug development, offering a view into the intricate interaction between drugs/nanoparticles and tissues in vivo and allows for the evaluation of therapeutic intervention in a variety of tissues and organs. This interdisciplinary collaboration continues to drive the advancements of novel therapeutic strategies.
Slide 1: Title Slide
Extrachromosomal Inheritance
Slide 2: Introduction to Extrachromosomal Inheritance
Definition: Extrachromosomal inheritance refers to the transmission of genetic material that is not found within the nucleus.
Key Components: Involves genes located in mitochondria, chloroplasts, and plasmids.
Slide 3: Mitochondrial Inheritance
Mitochondria: Organelles responsible for energy production.
Mitochondrial DNA (mtDNA): Circular DNA molecule found in mitochondria.
Inheritance Pattern: Maternally inherited, meaning it is passed from mothers to all their offspring.
Diseases: Examples include Leber’s hereditary optic neuropathy (LHON) and mitochondrial myopathy.
Slide 4: Chloroplast Inheritance
Chloroplasts: Organelles responsible for photosynthesis in plants.
Chloroplast DNA (cpDNA): Circular DNA molecule found in chloroplasts.
Inheritance Pattern: Often maternally inherited in most plants, but can vary in some species.
Examples: Variegation in plants, where leaf color patterns are determined by chloroplast DNA.
Slide 5: Plasmid Inheritance
Plasmids: Small, circular DNA molecules found in bacteria and some eukaryotes.
Features: Can carry antibiotic resistance genes and can be transferred between cells through processes like conjugation.
Significance: Important in biotechnology for gene cloning and genetic engineering.
Slide 6: Mechanisms of Extrachromosomal Inheritance
Non-Mendelian Patterns: Do not follow Mendel’s laws of inheritance.
Cytoplasmic Segregation: During cell division, organelles like mitochondria and chloroplasts are randomly distributed to daughter cells.
Heteroplasmy: Presence of more than one type of organellar genome within a cell, leading to variation in expression.
Slide 7: Examples of Extrachromosomal Inheritance
Four O’clock Plant (Mirabilis jalapa): Shows variegated leaves due to different cpDNA in leaf cells.
Petite Mutants in Yeast: Result from mutations in mitochondrial DNA affecting respiration.
Slide 8: Importance of Extrachromosomal Inheritance
Evolution: Provides insight into the evolution of eukaryotic cells.
Medicine: Understanding mitochondrial inheritance helps in diagnosing and treating mitochondrial diseases.
Agriculture: Chloroplast inheritance can be used in plant breeding and genetic modification.
Slide 9: Recent Research and Advances
Gene Editing: Techniques like CRISPR-Cas9 are being used to edit mitochondrial and chloroplast DNA.
Therapies: Development of mitochondrial replacement therapy (MRT) for preventing mitochondrial diseases.
Slide 10: Conclusion
Summary: Extrachromosomal inheritance involves the transmission of genetic material outside the nucleus and plays a crucial role in genetics, medicine, and biotechnology.
Future Directions: Continued research and technological advancements hold promise for new treatments and applications.
Slide 11: Questions and Discussion
Invite Audience: Open the floor for any questions or further discussion on the topic.
Richard's entangled aventures in wonderlandRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
The increased availability of biomedical data, particularly in the public domain, offers the opportunity to better understand human health and to develop effective therapeutics for a wide range of unmet medical needs. However, data scientists remain stymied by the fact that data remain hard to find and to productively reuse because data and their metadata i) are wholly inaccessible, ii) are in non-standard or incompatible representations, iii) do not conform to community standards, and iv) have unclear or highly restricted terms and conditions that preclude legitimate reuse. These limitations require a rethink on data can be made machine and AI-ready - the key motivation behind the FAIR Guiding Principles. Concurrently, while recent efforts have explored the use of deep learning to fuse disparate data into predictive models for a wide range of biomedical applications, these models often fail even when the correct answer is already known, and fail to explain individual predictions in terms that data scientists can appreciate. These limitations suggest that new methods to produce practical artificial intelligence are still needed.
In this talk, I will discuss our work in (1) building an integrative knowledge infrastructure to prepare FAIR and "AI-ready" data and services along with (2) neurosymbolic AI methods to improve the quality of predictions and to generate plausible explanations. Attention is given to standards, platforms, and methods to wrangle knowledge into simple, but effective semantic and latent representations, and to make these available into standards-compliant and discoverable interfaces that can be used in model building, validation, and explanation. Our work, and those of others in the field, creates a baseline for building trustworthy and easy to deploy AI models in biomedicine.
Bio
Dr. Michel Dumontier is the Distinguished Professor of Data Science at Maastricht University, founder and executive director of the Institute of Data Science, and co-founder of the FAIR (Findable, Accessible, Interoperable and Reusable) data principles. His research explores socio-technological approaches for responsible discovery science, which includes collaborative multi-modal knowledge graphs, privacy-preserving distributed data mining, and AI methods for drug discovery and personalized medicine. His work is supported through the Dutch National Research Agenda, the Netherlands Organisation for Scientific Research, Horizon Europe, the European Open Science Cloud, the US National Institutes of Health, and a Marie-Curie Innovative Training Network. He is the editor-in-chief for the journal Data Science and is internationally recognized for his contributions in bioinformatics, biomedical informatics, and semantic technologies including ontologies and linked data.
Seminar of U.V. Spectroscopy by SAMIR PANDASAMIR PANDA
Spectroscopy is a branch of science dealing the study of interaction of electromagnetic radiation with matter.
Ultraviolet-visible spectroscopy refers to absorption spectroscopy or reflect spectroscopy in the UV-VIS spectral region.
Ultraviolet-visible spectroscopy is an analytical method that can measure the amount of light received by the analyte.
Nutraceutical market, scope and growth: Herbal drug technologyLokesh Patil
As consumer awareness of health and wellness rises, the nutraceutical market—which includes goods like functional meals, drinks, and dietary supplements that provide health advantages beyond basic nutrition—is growing significantly. As healthcare expenses rise, the population ages, and people want natural and preventative health solutions more and more, this industry is increasing quickly. Further driving market expansion are product formulation innovations and the use of cutting-edge technology for customized nutrition. With its worldwide reach, the nutraceutical industry is expected to keep growing and provide significant chances for research and investment in a number of categories, including vitamins, minerals, probiotics, and herbal supplements.
1. 1
Case of an Unidentified Frog Observed in the Bladen Branch
Nature Reserve, Toledo District, Belize, Central America
Jack M. Corbo
************
South Euclid, OH 44121
Abstract
The Maya Mountains in the Bladen Nature
Reserve of Belize have only recently been
explored in the last 30 years. On a 2000
expedition to the region, the author sited in
Muklebal Tzul valley a species of anuarian that
could not be identified. The anecdotal
description of the frog in this publication was
observed on the gravel bank of Cave creek: a
tributary of the upper Bladen River that is the
eastern branch of the Monkey River drainage.
Introduction
In 1525, Hernán Cortés cursed the arduous
terrain of the Maya Mountains of southern
Belize as he led an expedition around the range
to subdue the local Mayas, then a backwater of
their realm. Though not very high, the
inaccessibility of this mountain range prevented
their crossing until 1875 while the highest
summit, Doyle’s Delight, was first accented as
recently as 1987 (Kindon, 2002). Exploration is
difficult due to the steeply eroded knife-like
karst limestone composition that is further
isolated by dense stands of impenetrable
seasonal rain forest. This “terra incognita” (it
was also referred to as “Lost World” by the
expedition director) aspect was the very reason
that a local university archeologist directed a
series of archeological expeditions to the Maya
Mountains for a decade starting in the 1990’s
(Dunham, 1995: Dunham, 2009). With the
discovery of several previously undocumented
Mayan out-post cities on earlier expeditions, the
very unexplored nature of the Maya Mountains
led me to conclude that significant biological
findings could also be made.
Due to the cross-disciplinary nature of the
expeditions and as a then biology PhD student, I
was invited to be a member of the 1999 and
2000 expeditions deep into the 99,687 acre
Bladen Branch Nature Reserve. A region of the
upper Monkey River drainage and then the main
area of my field research.
Although the objective of this paper is to
describe an unidentified frog seen on one of
these expeditions, it also provides an
opportunity to document the serendipitous
nature and pitfalls of scientific field
investigations (the first half of this paper). Such
obstacles can possibly lead to discoveries
outside the intended area of research.
Background
Guides at the front of our procession used
machetes to advance a trail through the tick
infested forest undergrowth to our field camp.
Some of the Mayans we employed had
improvised backpacks made of used white rice
sacks of nylon that were supported by a thinned
palm leaf used as a trump line across their
foreheads. I recognized this as a traditional
method of portage chronicled as far back as the
Spanish conquest (Ross, 1978).
Occasionally abandoned logging trails (the
region was known for its lucrative mahogany
trade in the late 19th and early 20th centuries) or
sun-baked dry riverbeds (during the rainy
season from July to December they become
lethal torrents) were incorporated into the trail.
The dry riverbed of lower Bladen River, a
collapsed river cave, had the added drudgery of
enormous weathered limestone boulders some
the size of small houses littering the trail.
Dubbed “Rock Shoot”, despite the hardship of
climbing over or squeezing between these
obstacles to reach our destination, I learned to
welcome this last leg of our trek. It was located
near field camp and heralded an end of a
2. 2
grueling 16 km, day-and-a-half inland hike that
began at a logging road off Belize’s Southern
Highway.
Two field camps were established to
accommodate our roughly thirty-member
expedition crew. The first was located at the
eastern end of AC valley where the middle
Bladen River exited AC cave. The valley and
cave were so-named for a much welcomed air-
conditioned-like microclimate that emanated
from the cave and permeated our canopy-shaded
camp. A smaller camp was set up in the larger
neighboring Muklebal Tzul (“Mooklaybahl
Tzool”) valley.
The fieldwork was tedious; often pestered by
malarial mosquitoes, which I caught in 1999,
and botflies whose parasitic larvae I was
routinely infested with in numbers too high to
count (the juvenile insects burrow below and
feed on skin tissue). Out of desperation I
developed a reliable method to remove these
pests on the 2000 expedition by placing a drop
of insecticide on their breathing hole. After a
few minutes, the infested area of skin was
thoroughly washed (many of the insecticides in
Belize contain DDT). After a days wait, the
decomposing pest loosened its grip and could be
extracted by applying pressure like popping a zit
(the botfly larvae have three rows of spikes
surrounding their thorax that otherwise prevent
easy extraction even when freshly killed).
Other dangers in the field were the venomous
fur-de-Lance (Bothrops asper) and herds of
White-Lipped Peccaries (Tayasuu pecan), the
latter mauled one unfortunate expedition
member on our 2000 expedition. We had to
vicariously call-in via satellite phone to
Washington DC a Royal British Army
helicopter from the capital of Belize City some
112 km (70 miles) away. The dusk casualty
evacuation was made at a helicopter landing
area we routinely had cut from the forest near
our field camp as a precaution. I vividly
remember one expedition member treating the 2
inch long by 1 inch deep rear wound caused by
the tusk of these animals with iodine from my
tissue sampling kit for turtles as we waited for
the helicopter on the edge of the field.
Initially I planed to study the population
genetics of Kinosternon leucostomum (White-
lipped Mud Turtle) for my field research. On
later expeditions, a fish species, Heterondria
bimaculata (False Swordtail) and Pachychilus
indiorum (Jute Snail) were added. These were
all commonly found species in the middle
Bladen River and chosen for their varying
degrees of mobility and ease of identification.
They were also easily captured during the dry
season (January to June) when portions of the
river’s course and its tributaries run dry forming
stagnant pools that force aquatic life to
congregate in abnormally large numbers. This
was especially helpful the in the capture of K.
leucostomum which were found in high
densities hiding in the decomposing leaf litter at
the bottom of the streambeds. I intended to
extract DNA from tissue samples collected from
the three species and sequence small genomic
domains to determine if tributary animal
populations have unique genetic characteristics
specific to each stream in the study area.
Figure 1. Map of Bladen River drainage found
in the southwestern region of the Bladen Branch
Nature Reserve, Toledo District in southern
Belize. AC and Muklebal Tzul field camps are
represented by the large and small solid circles,
respectively. The helicopter landing area is
represented by the square. AC Cave is depicted
by the doted line between the two field camps.
The unidentified frog was sited in May of 2000
on the bank of Cave Creek within an estimated
300 m upstream from the Muklebal Tzul valley
field camp.
3. 3
The streams in the investigation were Ek Xux
(“Eck Shoosh”) creek and the middle Bladen
River: tributaries to the lower Bladen River
(Figure 1). Ek Xux creek courses over volcanic
bedrock making its water slightly acidic and
inhospitable to P. indiorum unlike the limestone
bedrock of middle Bladen River that has
carbonate rich water, a favorable habitat for the
snail (Corbo, 2000). The availability of the P.
indiorum in one tributary and its absence from
another provide potentially different diets for K.
leucostomum, which inhabits both tributaries. I
hypothesized and attempted to prove that
populations of K. leucostomum, develop minor
genetic variations to cope with these different
food resources. My main interest was the
genetic analysis of animal populations in the
tributaries as well as the genetic analysis of the
animal populations at the tributaries’
convergence. Just as the waters of the two
converging tributaries mix, the animal
subpopulations of the same species inhabiting
different tributaries also merge and interbreed
with upstream subpopulations. I further
hypothesized that a genetic mixing downstream
of subpopulations could preserve adaptive traits
uniquely advantageous to upstream tributary
environments. This archiving mechanism would
be useful for recolonization if an upstream
tributary subpopulation was catastrophically
extirpated. In other words, when upstream
genetic traits are introduced to downstream
populations the traits have the potential to be
reintroduced by recolonization and
establishment of a recovering upstream
subpopulation in the advent of a prior upstream
population catastrophe. Otherwise advantageous
adaptive traits would be permanently lost if they
were solely restricted to drought vulnerable
upstream populations and would have to form
again a priori.
A GPS survey made by the author (with
assistance from guides Norman Chaco and Ben
Rash) on the hydrology of Ex Xux creek and
middle Bladen River indicated approximately
half their lower course ran dry during the dry
season. Streamsinks (where the river runs
underground) potentially isolate upstream
populations from those downstream where a
resurgence was observed at the convergence of
these two streambeds. Lethal catastrophes could
conceivably occur during an abnormally hot dry
season where an upstream tributary would
completely run dry only to become habitable
again with a continuous flow of the tributary
during the rainy season. Such research would
provide a mechanism for riparian species to
maintain or rapidly regain portion of its range
(by the inbreeding expression of beneficial
recessive traits) lost during environmental
catastrophic events.
Preliminary d-loop CR mtDNA sequence
phylogenetic analysis was made on eleven K.
leucostomum collected from three sites (with
one out group specimen from Nicaragua)
suggested there were no clear subpopulations.
The turtles caught at the Muklebal Tzul pool
near the entrance to AC Cave, AC valley, and
Ek Xux creek showed evidence of migration
between the sites (van Keulen, 2003), even
though they were separated by steep karst
mountain terrain or connected by tortuous
caves.
Regrettably time restrictions, funding
problems and a near direct hit to the study area
by hurricane Iris in 2001 (making trails to the
field camp cut in previous years impassible with
fallen timber) prevented me from obtaining the
PhD. But it was on the 2000 expedition during a
field excursion to capture K. leucostomum in
late May that I sited a cream colored frog that is
the subject of this paper.
Study Area
The approximately 8.75 km2 (roughly 4 km
long) Muklebal Tzul valley derives its name
from Q’eqchi’ Maya meaning “Hill of Many
Tombs” (Kindon, 2002). The ruined structures
(211 were counted) in this valley were built of
eroded rectilinear limestone slabs, collected
from local rock outcrops and piled up to 7 m
high to build monumental ceremonial structures
with civic plazas, tombs, and house mounds (a
remote area of the canyon was also found to
have stone-faced agricultural terraces). Far from
the better-known Mayan archeological sites like
4. 4
Tikal or Palenque, no elaborate carvings or
hieroglyphics were found after the site was
bushed (cleared of vegetation by machetes
wielding guides). Ornamentation was likely
painted rather than carved on any architectural
stonework and had long since weathered away.
The Muklebal Tzul archeological site is
thought to be a backwater settlement established
during the Maya Late Classic as a frontier
kingdom dating roughly AD 700-850. This
remote mountainous city had a population
estimate (based on the number of house mounds
surveyed multiplied by the average number of
ethnic Mayans occupying a contemporary
house) at the height of occupation of 1,146
people (Kindon, 2002). A more updated
interpretation of the site is that the city was
founded to exploit mineral resources much like
the modern mining city of Denver, Colorado.
The region is thought to be an economic source
for quarried raw materials like granite for
grinding stones. Mineral pigments such as red
hematite was another material traded to lowland
Mayan cities far downstream toward the
Caribbean coast. The area is also rich in cave
formations that had religious significance to the
Maya. I particularly remember Mayehal Xheton
Cave which had the remnants of a 10 m wide
elevated plaster platform (stage) constructed in
front. The entrance was narrow with a natural
pointed arch flanked by a second smaller cave
giving the cliff face a cathedral-like facade.
Other caves had a more practical use where the
cooler temperatures were exploited to store
presumably corn. Large empty ollas, round-
bottom short-necked ceramic storage vessels up
to 60 cm (2 ft) in diameter, were found intact in
some of theses dry caves (Prufer, 2002).
The 2000 MMAP expedition had an
archeological survey conducted on the Mayan
ruins and limestone caves of Muklebal Tzul
valley. The smaller field camp was set up to
accommodate three archeological graduate
students and a support team of Belizean field
technicians. I was invited from AC field camp
along with two guides, Ben Rash then from the
town of Big Falls and Sebastian “Besh” Rash
then from the village of Silver Creek, to expand
my fieldwork into this adjacent canyon (two
guides always assisted me, in the case of an
emergency one of our party stayed with the
injured while the other ran to a field camp for
help).
The Muklebal Tzul valley field camp was
located on Cave Creek which served as the
camp’s water source. Another aquatic habitat
found in the eastern side of this canyon was
small 3 m wide pool that had a high density of
K. leucostomum: five adult female, eight adult
male, and five hatchlings (Corbo, 2000).
Situated in the riverbed of the dry upper Bladen
River, I suspected this stagnant pool acted as an
oasis/nursery that sustained the turtles until the
rainy season resumed the continuous flow of the
river. This would explain the accumulation in
the pool of 1.5 ppm dissolved ammonia
(TetraTest® Ammonia; Corbo, 2000) making it
potentially deadly for fish and presumably
amphibians. An artificial source of water devoid
of aquatic life was found at the Muklebal Tzul
archeological site where an intact 13 m long by
1 m high horizontal well was constructed
sidewise 2 m below the civic stelae plaza
(Prufer, 2002) at the core of the ruined city. The
once plaster lined tunnel ended in natural spring
flowing from a fist-sized fissure. The proximity
and low volume likely made it an exclusive
water source, insufficient to supply for the entire
city’s population during the dry season.
Habitat
Cave Creek flows through an Evergreen
Broadleaf Forrest in the Maya Mountains at an
elevation of 370 m (Meyers, Farneti, and Foster,
1996). A primary stream, the width was variable
with a maximum of 2 m and no more than 50
cm deep with a current estimated to be less than
4 m/min. Downstream of our field camp, a
stream sink caused the creek channel to run dry
as it followed the northeastern wall of the valley
where it converged with the dry streambed of
upper Bladen River. The river channel then
entered AC Cave which tunnels through the
eastern side of Muklebal Tzul valley. Tree
trunks snagged in the 15 m high ceiling at the
opening of the cave (observed by previous
5. 5
researchers) attested to the depth of severe
flooding that can occur during the rainy season.
I planned to make biological collections
upstream of Cave Creek to its source, but our
efforts ended after we encountered a 10 m
vertical waterfall in a narrowed branch of the
canyon. Located 1 km from the field camp, the
falls were climbed by both accompanying field
technicians who found yet another waterfall of
equal height above, suggesting that we were at
or near the rim of the valley. None of organisms
in my primary study (K. leucostomum, H.
bimaculata, and P. indiorum) were observed in
our survey.
The absence of the P. indiorum is especially
noteworthy in that it suggests an acidic water
chemistry as was also observed in neighboring
Ek Xux creek in the adjacent valley which had a
GH/KH of 0 ppm (GH/KH TetraTest®:
measurement of dissolved carbonates needed for
shell formation; Corbo, 2000) and a acidic pH
of 6.5 (pH TetraTest®; Corbo, 2000). Rain
runoff over a predominance of volcanic bedrock
in these two valleys is the likely cause for the
acidic water chemistry (Bateson and Hall,
1977). A resurgent cave spring roughly 60 m
from downstream entrance of AC Cave formed
the headwaters of the middle Bladen River
which registered a higher alkaline pH range of
7.5-8.6 and KH/GH range of 35-122 ppm
(Corbo, 2000). The higher alkaline water
chemistry of the down stream middle Bladen
River is likely the byproduct of dissolved
carbonates released by the acidic headwaters
from limestone strata that makeup AC Cave and
the riverbed. As a consequence of the high
KH/GH, unlike its upstream counterpart, the
middle Bladen River as it exited AC Cave had
an abundance of P. indiorum populations.
Description of Unidentified Frog
About 300 m upstream from the field camp
we observed the frog in question on the northern
side of Cave Creek which in this area was less
than a 1 m wide and not more than 10 cm deep.
The frog was seen for less than a minute by the
technicians and author in the midmorning
suggesting a diurnal behavior. It sat in a
stationary posture roughly 10 cm from the
stream northern edge on a damp, shaded
graveled bank. As depicted in Figure 2, the frog
had the appearance of a terrestrial species with
two prominent characteristics. The first and
most notable was a lack of dermal pigmentation
with a uniformly smooth cream-colored skin
with no notable blotches, striping or tubercles
(ventral skin pigmentation was not observed and
there may have been a darkened face mask
around the eyes). The second distinguishing
characteristic was the dorsalateral black eyes
with no discernable iris and the same diameter
as the medium sized tympanum. The interorbital
distance was roughly 15 mm. There were no
terminal discs observed on the fingers as are
found on tree frogs, which confirmed its
terrestrial behavior. A dorsalateral fold was
observed, the snout was rounded and the snout-
vent length was about 7.5 cm with a general
body shape was reminiscence of the genus
Rana.
Figure 2. Drawing made in 2004 by the author
of an unidentified frog observed at Cave Creek,
a tributary to the upper Bladen River (a branch
of the Monkey River), on a 2000 expedition to
Muklebal Tzul valley, Belize. Distinguishing
characteristics were the cream-colored skin and
black eyes. The frog appeared to be a terrestrial
species with a body shape of genus Rana.
One of my accompanying field technicians
dissuaded my attempts to hand capture the frog
as I straddled the stream in pursuit of the
6. 6
ambivalent anuran. He implied that it was a
common species and was not worthy of an
investigation. In hindsight as we resumed our
upstream survey, I regretted heeding this advice
and on our return downstream to the field camp
two hours later found that the frog was absent
from the site. A similar frog was seen by the
author a year earlier in the 1999 expedition in
the same region. The amphibian was observed
in the center of the mostly dry riverbed of the
middle Bladen River sitting on the damp clay
edge of very small 1 m crescent shaped pool. A
large boulder on the downstream side shaded
the muddy pool and its occupants from the
glaring tropical sun. This frog was darker and
likely not the same species seen at Cave Creek.
On a later expedition in 2003 to the valley of
Dam Creek (more than 16 km from east of Cave
Creek) in the eastern foothills of the Maya
Mountains near the town of Medina Bank the
frog was not observed. A flyer with the
illustration of the frog in Figure 2 was kindly
handed out to local workers by the co-director
of the 2004 Uxbenka: another university
archeological expedition site located at the
southern foothills of the Maya Mountains. No
response was received of the frog inhabiting this
region either, suggesting a restricted, not
cosmopolitan, range (Wanyerka, 2005). The
species is apparently confined to the interior of
the Maya Mountains, endemic perhaps solely to
Muklebal Tzul valley. The appearance of the
frog was reminiscent to the author specifically
to Rana Sylvatica (North American Wood Frog)
in size and morphology with a lack of skin
pigmentation.
Native Frog Candidates
A review of known frogs inhabiting Belize
provided four candidates for the frog seen at
Cave Creek (Meyer, Farneti, and Foster, 1996).
Rana juliani (Maya Mountains Frog) ranges in
the area, but its color is medium brown with
dark brown markings unlike the lighter colored
skin of the Cave Creek frog. Eleutherodactylus
laticeps (Broadhead Rainfrog) is a similar size
as the Cave Creek frog, but again as with R.
juliani the dorsal color is a medium to dark
brown, too dark to be a match for the Cave
Creek frog. Eleutherodactylus rhodopis
(Lowland Rainfrog) ranges in northern Belize
and is smaller than the unidentified frog as is
Eleutherodactylus chac (Maya Mountains
Rainfrog) which also has dark bands on its legs.
Another possibility is that a known frog from
neighboring regions intruded its range into the
study area. A review of frogs that range in
nearby countries had none of the characteristics
observed on the frog seen at Cave Creek
(Cambell, 1988).
The geography of Muklebal Tzul valley
provides favorable conditions for the
unidentified frog to be a color variant or
subspecies of the known frogs mentioned above.
The steep karst canyon walls can act as
migration barriers, essentially biological islands
that isolate local frog populations promoting
inbreeding and the expression of recessive genes
such as a leucistic genotype (Bachtel, 1995).
Pale leucistic phenotypes typically though not
aways have eyes that are light color unlike the
black eyes of the Cave Creek frog, making it a
color variant of a local frog unlikely. The
abundance of caves in the canyon and lack of
skin pigmentation lend a second possibility, the
frog is not adapted to epigean (surface)
environments but rather a species adapted to
hypogean (subterranian) environments.
Reduction of skin pigmentation is one
characteristic of troglobites, organisms that have
undergone regressive evolution living their
entire life cycle in caves (environments also
considered biological islands). Because the frog
was observed roughly 0.5 km outside the nearest
known cave, it is more appropriately called a
trogloxene: species that live in but are not
completely dependent on caves (Gillieson,
1996; Wilkins, Culver, and Humphreys, 2000).
AC Cave was explored on a different project, I
was collaborating with the American Cancer
Society, Natural Products Division, in the
collection of cave soil samples to isolate species
of fungus that would provide new variety of
antibiotics, much like penicillin. During the
arduous walk through the cave to collect soil
samples, although not conducted as
herpetological survey, no amphibians were
observed. As mentioned earlier, this region has
7. 7
an abundance of caves which does not exclude
the possibility that the frog originated from
another.
Recommendations
The description of the frog observed at Cave
Creek is admittedly anecdotal. The objective of
this paper is to encourage other researchers
working in the middle Bladen River to further
investigate frog species in this stream Photo
documentation and tissue samples for genetic
analysis are needed to determine its taxonomy
and confirm if it is actually an undocumented
species of frog. A herpetofaunal survey is
recommended during the dry season for
Muklebal Tzul valley with emphasis on Cave
Creek. To my knowledge the region where the
unidentified frog was sited, Cave Creek in the
Bladen Branch Nature Reserve, has not since
been revisited to the extent of the 2000
expedition.
Authors note: correspondence with another
2000 expedition member who was a native of
southern Belize indicated that that he also
observed a strange translucent shrimp inhabiting
one of caves in the study region (Cal, 2013).
Photos of the some of the sites in this paper can
be viewed on my Facebook timeline (1999-
2003).
.
Literature Cited
Bateson JH and Hall LHS. 1977. The Geology of the Maya Mountains, Belize. Her Majesty’s Stationary
Office. London.
Bechtel HB. 1995. Reptile and Amphibian Variants Colors, Patterns, and Scales. Krieger Publishing
Company. Malabar, Florida.
Cal M, 2013, personal correspondence, Precision Dialogue.
Cambell JA. 1998. Amphibians and Reptiles of Northern Guatemala, the Yucatan, and Belize.
University of Okalahoma Press. Norman. 95-97.
Corbo JM. 2000. field notebook. Maya Mountains Archeological Project (MMAP), Cleveland State
University.
Dunham PS, Abramiuk MA, Scott Cummings L, Yost C, and Pesek TJ, 2001. Ancient Maya
Cultivation in The Southern Maya Mountains of Belize: Complex and Sustainable Strategies Uncovered,
Antiquity, 83(319),
Dunham PS, 1995, The Maya Mountains Archeological Project (MMAP): The Initial Reconnaissance
Years (1992-1995). Paper for the proceedings of the First International Symposium of Maya
Archaeology.
Gillieson D. 1996. Caves: Processes, Development and Management. Blackwell Publishers Ltd.,
Oxford.
Kindon AW. 2002. Classic Maya Sociopolitical Organization and Settlement Patterns in the Maya
Mountains of Southern Belize. Ph.D. Dissertation. University of California, Los Angeles.
Prufer KM. 2002. Communities, Caves, and Ritual Specialists: A study of Sacred Space in the Maya
Mountains of Southern Belize. Ph.D. Dissertation. Southern Illinois University, Carbondale.
8. 8
Meyer JR, Farneti, and Foster C. 1996. A Guide to the Frogs and Toads of Belize. Kreiger Publishing
Co. Malabar, Florida.
Ross K (commentary), 1978 (originally published after the Spanish conquest of Mexico), Codex
Mendoza Aztec Manuscript, Miller Graphics.
van Keulan H. 2003. personal correspondence, Cleveland State University
Wanyerka, P. 2004, personal correspondence, Cleveland State University.
Wilkins H, Culver DC, and Humphreys WF (editors). 2000. Ecosystems of the World: 30 Subterranean
Ecosystems. Elsevier. Amsterdam.