Chemical Physics Letters 467 (2008) 37–40



                                                              Contents lists available at ScienceDirect


                                                            Chemical Physics Letters
                                               journal homepage: www.elsevier.com/locate/cplett




Hydrogen bonding with a hydrogen bond: The methane–water complex and the
penta-coordinate carbon
B. Raghavendra, E. Arunan *
Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore 560012, Karnataka, India



a r t i c l e        i n f o                           a b s t r a c t

Article history:                                       Ab initio and atoms in molecules (AIM) theoretical studies have been used to show that in a 1:1 complex
Received 25 August 2008                                formed between CH4 and H2O, CH4 acting as a hydrogen bond acceptor leads to the global minimum struc-
In final form 4 November 2008                           ture. There is a bond path connecting C to the H of H2O revealing a penta-coordinate carbon that could be
Available online 7 November 2008
                                                       the precursor to the CHþ . It appears to be a general feature in CH4Á Á ÁHX complexes (X = F, Cl, and SH). It is
                                                                               5
                                                       in agreement with the experimental structure for analogous complexes and also the C2H6Á Á ÁHF/HCN com-
                                                       plexes, suggesting that it is also a general feature for hydrocarbon–HX interaction.
                                                                                                                          Ó 2008 Elsevier B.V. All rights reserved.




1. Introduction                                                                            critical point between these two atoms as expected [11]. However,
                                                                                           this work did not consider the global minimum geometry and con-
   The title of this manuscript draws from the title of a recently                         centrated on the C–HÁ Á ÁO hydrogen bond, no wonder influenced by
published article ‘Chemical bonding without chemical bonds’ [1].                           the increasing attention devoted to this weak, nevertheless impor-
In this work, the Authors discussed the intra-molecular interac-                           tant interaction [12]. What is the nature of the interaction or bond-
tions in iron trimethylenemethane complex and pointed out that                             ing in the experimentally observed structure, which is found to be
contrary to chemical wisdom, a bond path was not found connect-                            the global minimum theoretically? Similar structures have been
ing the metal atom to the three methylene carbons. The ‘chemical                           observed experimentally for several other CH4Á Á ÁHX (X = F, Br, Cl,
wisdom’ was that the three methylene carbons were ‘bonded’ to                              and CN) complexes, in which H of HX is pointing towards the cen-
the Fe atom as a triply coordinating ligand. Atoms in molecules                            tre of a tetrahedral face of methane, represented here as X–HÁ Á ÁD
[2] theoretical calculations, however, revealed that there were no                         (triangle symbol represents one of the tetrahedron faces of CH4)
bond paths connecting the three methylene carbons to the Fe                                [13–17]. Evidently, the interaction is similar in all these complexes
which according to this theory implied that there are no ‘chemical                         and one can see that all the HX referred above are typical hydrogen
bonds’ between them leading to the title as given above. The cen-                          bond donors. These spectroscopic studies, however, could not
tral carbon, however, was connected to the Fe through a bond path.                         establish whether there is a ‘bond’ between C of CH4 and H of HX.
In the current manuscript, we discuss the hydrogen bonding in                                  A structure in which O–H points towards a tetrahedron plane of
CH4Á Á ÁH2O and analogous complexes. Results from microwave                                CH4 could be interpreted as the result of close packing as the ap-
spectroscopic experiments showed that the structure of this com-                           proach towards a corner or an edge of the tetrahedron would lead
plex has the H from water pointing towards a tetrahedron plane in                          to relatively larger intermolecular distances. Moreover, such close
CH4 [3]. This was in agreement with a thorough theoretical study                           approach can lead to better stabilization, when dispersive (van der
[4], published in the previous year, finding this geometry to be                                                                                        ´
                                                                                           Waals?) forces dominate the interaction. Indeed, Szczçsniak et al.
the global minimum. This work also revealed that a structure hav-                          concluded that inclusion of dispersion is important in determining
ing C–HÁ Á ÁO hydrogen bonding is a local minimum in the intermo-                          the global minimum of CH4–H2O complex [4]. However, they
lecular potential energy hyper-surface.                                                    pointed out categorically that ‘although the dispersion energy
   Hydrogen bonding in CH4Á Á ÁH2O complex has attracted a lot of                          determines the overall trend in the stabilities, it is important to
theoretical attention [4–11]. Except for Ref. [4], many of the other                       stress that none of the single components of the interaction energy
papers published before and after, discussed only the C–HÁ Á ÁO                            is capable of a qualitatively correct description of the anisotropy
interactions in this complex. The AIM theoretical calculations on                          (in the intermolecular potential)’ (Emphasis and words in paren-
CH4Á Á ÁH2O complex were reported earlier, revealing a bond path                           thesis ours). Anisotropy (directionality) is generally thought to be
connecting H from CH4 to the O and a characteristic (3,À1) bond                            the defining feature of hydrogen bonding compared to the more
                                                                                           general ‘van der Waals interactions’ between molecules.
 * Corresponding author. Fax: +91 80 2360 0282.                                                The CH4–HX complexes are important as they can give some in-
   E-mail address: arunan@ipc.iisc.ernet.in (E. Arunan).                                   sight about the CHþ , which has proven to be a very difficult ion to
                                                                                                               5


0009-2614/$ - see front matter Ó 2008 Elsevier B.V. All rights reserved.
doi:10.1016/j.cplett.2008.11.009
38                                                   B. Raghavendra, E. Arunan / Chemical Physics Letters 467 (2008) 37–40


                                                                                            and SH) complexes. Interestingly, a bond critical point is observed
                                                                                            in all these complexes connecting the C of CH4 to the H of HX. The
                                                                                            bond path goes from H of HX through the tetrahedron plane
                                                                                            formed by the three H atoms of methane and connects to the cen-
                                                                                            tral C atom. This is similar to what was found in Ref. [1] between
                                                                                            the central C atom and the Fe atom through a plane formed by
                                                                                            three C atoms!

                                                                                            2. Computational details

Fig. 1. (a) Electrostatic potential (ESP) of methane indicating the electron rich               Ab initio molecular orbital and AIM theoretical studies have
region in light green colour. It is along the centre of the tetrahedron planes.
                                                                                            been carried out to gain more insight about both C–HÁ Á ÁO and O–
Optimized structures (at MP2/aug-cc-pVTZ level) for H4CÁ Á ÁH2O (b) and H3C–
HÁ Á ÁOH2 (c) along with the bond critical points and bond paths from AIM
                                                                                            HÁ Á ÁD interactions. Geometry optimization has been carried out
calculations. HBCP is the hydrogen bond critical point. (a) ESP, (b) H4CÁ Á ÁH2O, (c)       at a reasonably higher level calculation i.e. MP2(FULL)/aug-cc-
H3C–HÁ Á ÁOH2. (For interpretation of the references to colour in this figure legend,        pVTZ level using the commercial GAUSSIAN-03 software [32]. Fre-
the reader is referred to the web version of this article.)                                 quency calculations at the same level were done to calculate the
                                                                                            frequency shifts on complex formation as well as to ensure that
                                                                                            the optimized geometries are true minima. Single point energies
study, both experimentally and theoretically. The detailed analysis                         at CCSD(T)/aug-cc-pVTZ level were calculated with the optimized
of the structure of ðCH5 Þþ is somewhat intriguing and all the evi-                         geometries in order to get more accurate values of interaction
dence indicate that the global minimum can be viewed as a CHþ         3
                                                                                            energies. Four systems were chosen for our study involving CH4
tripod with a H2 moiety attached to the carbon in an eclipsed Cs                            interaction with HF, HCl, H2O, and H2S, and both C–HÁ Á ÁX and X–
configuration [18–20]. Both H2O and NH3 have lone pairs which                                HÁ Á ÁD geometries were considered. The interaction energies were
can not only accept hydrogen bonds but also a proton to form                                corrected for basis set superposition error using the counterpoise
H3 Oþ and NHþ , respectively. Evidently, CH4 does not have a lone
                4
                                                                                            method [33]. Wave function for the optimized geometry is gener-
pair to accept a hydrogen bond or a proton. Our understanding                               ated using the key words OUPUT = WFN, DENSITY = CURRENT and
about hydrogen bonding has evolved over the last century and it                             SCF = TIGHT in GAUSSIAN03. The AIM (atoms in molecules) calcula-
has been well established now that any electron rich region can                             tions were done using the AIM 2000 software [34]. Non-bonded ra-
act as a hydrogen bond acceptor [21,22]. Ref. [21] defined the                               dii of acceptor atom and interacting ‘H’ atom were calculated using
hydrogen bond as ‘an intermediate range intermolecular interac-                             MORPHY98 [35,36] program.
tion between an electron-deficient hydrogen and a region of high
electron density’. Ref. [22] defined the hydrogen bond as ‘an attrac-                        3. Results and discussion
tive interaction between an electron-deficient hydrogen atom al-
ready bonded to one atom and an electron rich region either                                     Table 1 lists the interaction energy, the H–A bond distance, the
within the same or with another atom/molecule’. Examples for                                X–H–A bond angle (A is the H-bond acceptor atom), the increase in
the electron rich regions include the traditional lone pairs in H2O                         bond length of X–H in the complex compared to the monomer and
and NH3 [23], p electrons in C2H4 [24], r electrons in H2 [25],                             the vibrational frequency shift in X–H mode following complex
and even an unpaired electron in CH3 radical [26,27]. Where is                              formation for both X–HÁ Á ÁD and C–HÁ Á ÁX minima. All these results
the electron rich region in CH4? Analysis of the molecular electro-                         are from MP2/aug-cc-pVTZ level calculations. The single point
static potential can help in identifying the site of an electrophilic                       interaction energies calculated at CCSD(T)/aug-cc-pVTZ are also re-
attack, in this case the approach of H from the donor [28,29]. A look                       ported in the Table. These are the traditional parameters that were
at the electrostatic potential of CH4 clearly identifies the centre of                       considered for inferring a hydrogen bond [23,24]. In all four com-
each of the four tetrahedron faces as regions of high electron den-                         plexes investigated, the X–HÁ Á ÁD geometry has a larger complexa-
sity (see Fig. 1). Clearly, the hydrogen bond donors such as H2O                            tion energy compared to C–HÁ Á ÁX geometry. The results from the
would have their hydrogen atom approaching this region to form                              single point CCSD(T) calculations predict the binding energies to
the ‘hydrogen bond’.                                                                        be uniformly lower than those from MP2 calculations but do not
    Atoms in molecules theory has proved to be quite useful in                              change the general trend or even the quantitative difference be-
understanding bonding [2]. Koch and Popelier have come up with                              tween the two structures for the same complex. All X–HÁ Á ÁD geom-
a set of criteria to characterize interactions involving hydrogen as                        etries have stabilization energy more than 4 kJ molÀ1 and the C–
hydrogen bonding or van der Waals interaction and they have been                            HÁ Á ÁX geometries have it less than 4 kJ molÀ1. The difference be-
extensively used [30,31]. Such an analysis on structures corre-                             tween the two geometries is higher for CH4Á Á ÁHF/HCl complexes
sponding to both minima i.e. C–HÁ Á ÁO and O–HÁ Á ÁD, would be quite                        ($6.0 kJ molÀ1)      compared      to   CH4Á Á ÁH2O/H2S  complexes
useful and it is reported in this Letter for CH4Á Á ÁHX (X = F, Cl, OH,                     ($2.0 kJ molÀ1).


Table 1
Interaction energy (E in kJ molÀ1) calculated at MP2/aug-cc-pVTZ level and single point CCSD(T) levels corrected for BSSE. optimized H–A bond distances (RH–A in Å) and bond
angles (XHA in °), change in H–X bond length after complex formation (RH–X in Å) and shift in H–X stretching frequency due to complex formation (in cmÀ1). A is the acceptor
atom.

Complex       DE MP2     DE CCSD(T)    RH–Aa                 DXHA    DRH–X     Dm       Complexa        DE MP2   DE CCSD(T)   RH–Aa                 DXHA    DRH–X     Dm
H4CÁ Á ÁHF    À8.8       À7.9          2.269   (2.20/2.90)   179.5   0.002     60.2     H3C–HÁ Á ÁFH    À2.9     À2.2         2.520   (2.43/2.55)   179.3   À0.001    À11.5
H4CÁ Á ÁHCl   À9.6       –             2.388   (2.47/2.90)   178.7   0.002     17.2     H3C–HÁ Á ÁClH   À3.8     –            2.930   (2.87/3.00)   179.4    0.000     À5.8
H4CÁ Á ÁH2O   À6.3       À5.0          2.491   (2.47/2.90)   176.0   0.000     13.8     H3C–HÁ Á ÁOH2   À4.2     À3.3         2.542   (2.47/2.60)   179.3   À0.001     À8.3
H4CÁ Á ÁH2S   À6.7       À3.8          2.603   (2.75/2.90)   177.6   0.001      6.2     H3C–HÁ Á ÁSH2   À5.0     À2.4         3.025   (2.90/3.05)   178.2    0.000     À0.6
  a
    Numbers in parentheses are the sums of hydrogen bond radii defined for the corresponding complexes (Ref. [22]) followed by the sums of van der Waals radii of H and the
acceptor atom from Ref. [23].
B. Raghavendra, E. Arunan / Chemical Physics Letters 467 (2008) 37–40                                          39


    All complexes have ‘linear H bonds’ with X–HÁ Á ÁA angle close to                    a set of eight criteria to settle this issue. Interestingly, most of these
180°. The values vary from 176.0° for H4CÁ Á ÁH2O to 179.5° for                          criteria were met by all the eight structures investigated here.
H4CÁ Á ÁHF. The H–A distances in all these complexes, RH–A, listed                       According to Koch and Popelier, mutual penetration of H and
in Table 1 highlight something important about the hydrogen bond                         acceptor atoms is the necessary and sufficient condition [30]. Table
distances. These are compared to the sum of van der Waals radii                          2 lists the values of DrA and DrH, namely the difference between
[23] of H and A atoms and also the sum of the recently recom-                            non-bonded and bonded radii of the acceptor and hydrogen atoms.
mended hydrogen bond radii [22] for H and A atoms. The reader                            These values give a measure of the mutual penetration. The
is referred to Ref. [22] for the details of the hydrogen bond radii                      bonded radius is the distance from the bonded atom to the bond
and these are defined for strong, medium and weak hydrogen                                critical point along the bond path. The non-bonded radius is calcu-
bonds. The most striking observation is that the RH–A distances                          lated as the distance from the atom to the point at which the elec-
are significantly smaller than the sum of van der Waals radii for                         tron density becomes 0.001 au along the bond path in the isolated
X–HÁ Á ÁD structures but only marginally smaller for the C–HÁ Á ÁX                       molecule. For comparison, values for H2OÁ Á ÁHX and ArÁ Á ÁHX are in-
structures. These distances are within 0.1 Å from the sum of the                         cluded in Table 2, the former a typical hydrogen bond for all and
hydrogen bond radii recommended for these atoms. More impor-                             the latter a hydrogen bond for some [2,40]. It is interesting to note
tantly, for all the four X–HÁ Á ÁD structures, the RH–C is very close                    that the sum of DrA and DrH is about 0.7–0.9 Å for X–HÁ Á ÁC struc-
to the sum of hydrogen bond radii for H and C and in two cases                           tures and it is larger than that for the C–HÁ Á ÁX structures, 0.5–
(HCl and H2S) it is less than the sum of hydrogen bond radii. How-                       0.8 Å. For comparison, the H2OÁ Á ÁHX complexes have this value
ever, all the four C–HÁ Á ÁX structures have RH–A slightly larger than                   in the range 1.1–1.4 Å and the ArÁ Á ÁHX complexes have 0.6–0.9 Å.
the sum of hydrogen bond radii of H and A, but within about 0.1 Å,                       If one looks at DrH alone, it is clear that the H2OÁ Á ÁHX complexes
typical uncertainty in these radii. In other words, the X–HÁ Á ÁD                        have much higher values (0.6–0.8 Å) and the others have values
structures have shorter than average H–A distances and the C–                            of 0.3–0.4 Å. In any case, it is clear that X–HÁ Á ÁC has more ‘hydro-
HÁ Á ÁX structures have longer than average H–A distances. All the                       gen bonding’ nature than what C–HÁ Á ÁX shows, based on this
X–HÁ Á ÁD geometries show red-shift in X–H frequencies and the                           criterion.
C–HÁ Á ÁX geometries show small blue shift in C–H stretching fre-                            Koch and Popelier have also given a range for values of electron
quency and these are well established [24,37] for similar hydrogen                       density and Laplacian of the electron densities at the hydrogen
bonded complexes. Clearly, all the traditional criteria employed for                     BCP. These parameters are also listed in Table 2. The Laplacian val-
identifying a hydrogen bond suggest that the X–HÁ Á ÁD structures                        ues reported in this Table are defined as L ¼ À1=4r2 q as given in
qualify better as hydrogen bonds than the C–HÁ Á ÁX structures.                          Ref. [31]. Electron densities and Laplacian at the hydrogen BCPs are
    Let us now turn our attention to the results from AIM theoretical                    well within the range suggested for H-bonds. Here again, X–HÁ Á ÁC
calculations which are quite revealing. The most important obser-                        qualifies as a hydrogen bond better than C–HÁ Á ÁX. For example,
vation is that all eight complexes show a (3,À1) bond critical point                     electron density at the BCP for the complexes of H2OÁ Á ÁHF,
along a bond path corresponding to X–HÁ Á ÁD and C–HÁ Á ÁX interac-                      H4CÁ Á ÁHF, ArÁ Á ÁHF and H3CHÁ Á ÁFH are 0.0436, 0.0121, 0.0158 and
tions. Interestingly, for the X–HÁ Á ÁD geometry the bond critical                       0.0061 au, respectively. All of them fall within the range (0.002–
point (BCP) connects the C from CH4 to H from HX through a bond                          0.04 au) quoted by Koch and Popelier for a hydrogen bond. Inter-
path (see Fig. 1) and from now on it will be referred to as X–HÁ Á ÁC                    estingly, the electron density at BCP for CÁ Á ÁHF geometry is twice
hydrogen bond. According to Bader, the presence of a (3,À1) criti-                       that for CHÁ Á ÁF geometry and both are smaller than that of ArÁ Á ÁHF.
cal point along the bond path is the necessary and sufficient condi-                      For H2O and H2S complexes, the electron densities at BCP are very
tion for the existence of a bond [2]. Clearly C is bonded to the H of                    similar ($0.008 au) for both X–HÁ Á ÁC and C–HÁ Á ÁX geometries. The
HX and CHþ would have been possible with a penta-coordinate C.
             5                                                                           Laplacian for all the complexes shown in Table 2 are negative, indi-
However, as the proton is approaching the C through the tetrahe-                         cating that they are all closed shell interactions [31].
dron plane, the H–H interaction starts dominating the intermolec-                            The other parameters given by Koch and Popelier such as
ular potential surface and CHþ ends up with a structure that has
                                 5                                                       change in atomic volume, DV, change in total atomic energy, DE,
been experimentally and theoretically found. Evidently, in the case                      change in atomic population, DN and change in atomic first mo-
of H2O and NH3, the proton approaches the central atom away                              ments, DM, all for the H-bonded hydrogen atom all satisfy the cri-
from the hydrogens and these can form the hydronium and ammo-                            teria for these interactions to be classified as hydrogen bonds. (See
nium ions readily. Not surprisingly, attempts to look for NH2þ have
                                                               5                         Supporting materials) However, one exception is that the change in
not been very successful as the second proton is again looking at a                      atomic population of H, DN, is small but positive for X–HÁ Á ÁC
tetrahedron NHþ [38]. On the other hand the existence of H4 O2þ
                  4                                                                      (0.004–0.009) and X–HÁ Á ÁAr complexes and it is negative for both
has been shown experimentally and theoretically [39].                                    X–HÁ Á ÁOH2 and C–HÁ Á ÁX complexes. According to Koch and
    If one is not satisfied with the criterion by Bader for classifica-                    Popelier criteria, it should have been negative for hydrogen bonded
tion as hydrogen bonding, Koch and Popelier [30,31] have given                           complexes. Interestingly, they have pointed out that for FHÁ Á ÁPH3

Table 2
Atoms in molecule theoretical parameters for the eight complexes under investigation and the analogous Ar and H2O complexesa.

Complex         qb           Lb            r0 c
                                            A     rAc    rAd     r0 c
                                                                  H     rHc    rHd     Complex           qb           Lb          r0 c
                                                                                                                                   A      rAc   rAd   r0 c
                                                                                                                                                       H     rHc   rHd
H4CÁ Á ÁHF      0.01208      À0.01156      2.0    1.5    0.5     1.1    0.8    0.3     H3C–HÁ Á ÁFH      0.00605      À0.00618    1.7     1.5   0.2   1.4    1.1   0.3
H4CÁ Á ÁHCl     0.01066      À0.01015      2.0    1.5    0.5     1.3    0.9    0.4     H3C–HÁ Á ÁClH     0.00591      À0.00483    2.2     1.8   0.4   1.4    1.1   0.3
H4CÁ Á ÁH2O     0.00795      À0.00827      2.0    1.6    0.4     1.2    0.9    0.3     H3C–HÁ Á ÁOH2     0.00723      À0.00669    1.9     1.5   0.4   1.4    1.0   0.4
H4CÁ Á ÁH2S     0.00738      À0.00715      2.0    1.6    0.4     1.4    1.0    0.4     H3C–HÁ Á ÁSH2     0.00624      À0.00432    2.3     1.9   0.4   1.4    1.1   0.3
H2OÁ Á ÁHF      0.04356      À0.02625      1.9    1.2    0.7     1.1    0.5    0.6     ArÁ Á ÁHF         0.01584      À0.01394    2.0     1.5   0.5   1.1    0.7   0.4
H2OÁ Á ÁHCl     0.03503      À0.02388      1.9    1.2    0.7     1.3    0.6    0.7     ArÁ Á ÁHCl        0.00941      À0.00876    2.0     1.6   0.4   1.3    0.9   0.4
H2OÁ Á ÁH2O     0.02581      À0.02109      1.9    1.3    0.6     1.2    0.7    0.5     ArÁ Á ÁH2O        0.00805      À0.00804    2.0     1.6   0.4   1.2    0.9   0.3
H2OÁ Á ÁH2S     0.01694      À0.01633      1.9    1.3    0.6     1.4    0.8    0.6     ArÁ Á ÁH2S        0.00690      À0.00635    2.0     1.7   0.3   1.4    1.1   0.3
 a
      Results from calculation at MP2(FULL)/aug-cc-pVTZ level.
 b
      Electron density at HBCP, q, and Laplacian of the electron density at HBCP, L defined as L ¼ À1=4r2 q.
  c
      Non-bonded radii of the acceptor atom and hydrogen atom, r 0 and r 0 , and bonded radii of acceptor and hydrogen atoms, rA and rH in Å.
                                                                        A     H
 d
      rA = (r0 À rA ) and rH = (r0 À r H ) which are the penetration parameters in Å.
             A                   A
40                                          B. Raghavendra, E. Arunan / Chemical Physics Letters 467 (2008) 37–40


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been shown that the former resembles a hydrogen bond more clo-                   [25] S.J. Grabowski, W.A. Sokalski, J. Leszczynski, Chem. Phys. Lett. 432 (2006) 33.
sely than the commonly considered C–HÁ Á ÁX interactions. In all                 [26] I. Alkorta, I. Rozas, J.F. Elguero, Ber. Bunsen-Ges. Phys. Chem. 102 (1998) 429.
these cases, the H–A distances are very close to the sum of the                  [27] B. Raghavendra, E. Arunan, J. Phys. Chem. A 111 (2007) 9699.
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   Supplementary data associated with this article can be found, in
the online version, at doi:10.1016/j.cplett.2008.11.009.

Hydrogen bonding 4

  • 1.
    Chemical Physics Letters467 (2008) 37–40 Contents lists available at ScienceDirect Chemical Physics Letters journal homepage: www.elsevier.com/locate/cplett Hydrogen bonding with a hydrogen bond: The methane–water complex and the penta-coordinate carbon B. Raghavendra, E. Arunan * Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore 560012, Karnataka, India a r t i c l e i n f o a b s t r a c t Article history: Ab initio and atoms in molecules (AIM) theoretical studies have been used to show that in a 1:1 complex Received 25 August 2008 formed between CH4 and H2O, CH4 acting as a hydrogen bond acceptor leads to the global minimum struc- In final form 4 November 2008 ture. There is a bond path connecting C to the H of H2O revealing a penta-coordinate carbon that could be Available online 7 November 2008 the precursor to the CHþ . It appears to be a general feature in CH4Á Á ÁHX complexes (X = F, Cl, and SH). It is 5 in agreement with the experimental structure for analogous complexes and also the C2H6Á Á ÁHF/HCN com- plexes, suggesting that it is also a general feature for hydrocarbon–HX interaction. Ó 2008 Elsevier B.V. All rights reserved. 1. Introduction critical point between these two atoms as expected [11]. However, this work did not consider the global minimum geometry and con- The title of this manuscript draws from the title of a recently centrated on the C–HÁ Á ÁO hydrogen bond, no wonder influenced by published article ‘Chemical bonding without chemical bonds’ [1]. the increasing attention devoted to this weak, nevertheless impor- In this work, the Authors discussed the intra-molecular interac- tant interaction [12]. What is the nature of the interaction or bond- tions in iron trimethylenemethane complex and pointed out that ing in the experimentally observed structure, which is found to be contrary to chemical wisdom, a bond path was not found connect- the global minimum theoretically? Similar structures have been ing the metal atom to the three methylene carbons. The ‘chemical observed experimentally for several other CH4Á Á ÁHX (X = F, Br, Cl, wisdom’ was that the three methylene carbons were ‘bonded’ to and CN) complexes, in which H of HX is pointing towards the cen- the Fe atom as a triply coordinating ligand. Atoms in molecules tre of a tetrahedral face of methane, represented here as X–HÁ Á ÁD [2] theoretical calculations, however, revealed that there were no (triangle symbol represents one of the tetrahedron faces of CH4) bond paths connecting the three methylene carbons to the Fe [13–17]. Evidently, the interaction is similar in all these complexes which according to this theory implied that there are no ‘chemical and one can see that all the HX referred above are typical hydrogen bonds’ between them leading to the title as given above. The cen- bond donors. These spectroscopic studies, however, could not tral carbon, however, was connected to the Fe through a bond path. establish whether there is a ‘bond’ between C of CH4 and H of HX. In the current manuscript, we discuss the hydrogen bonding in A structure in which O–H points towards a tetrahedron plane of CH4Á Á ÁH2O and analogous complexes. Results from microwave CH4 could be interpreted as the result of close packing as the ap- spectroscopic experiments showed that the structure of this com- proach towards a corner or an edge of the tetrahedron would lead plex has the H from water pointing towards a tetrahedron plane in to relatively larger intermolecular distances. Moreover, such close CH4 [3]. This was in agreement with a thorough theoretical study approach can lead to better stabilization, when dispersive (van der [4], published in the previous year, finding this geometry to be ´ Waals?) forces dominate the interaction. Indeed, Szczçsniak et al. the global minimum. This work also revealed that a structure hav- concluded that inclusion of dispersion is important in determining ing C–HÁ Á ÁO hydrogen bonding is a local minimum in the intermo- the global minimum of CH4–H2O complex [4]. However, they lecular potential energy hyper-surface. pointed out categorically that ‘although the dispersion energy Hydrogen bonding in CH4Á Á ÁH2O complex has attracted a lot of determines the overall trend in the stabilities, it is important to theoretical attention [4–11]. Except for Ref. [4], many of the other stress that none of the single components of the interaction energy papers published before and after, discussed only the C–HÁ Á ÁO is capable of a qualitatively correct description of the anisotropy interactions in this complex. The AIM theoretical calculations on (in the intermolecular potential)’ (Emphasis and words in paren- CH4Á Á ÁH2O complex were reported earlier, revealing a bond path thesis ours). Anisotropy (directionality) is generally thought to be connecting H from CH4 to the O and a characteristic (3,À1) bond the defining feature of hydrogen bonding compared to the more general ‘van der Waals interactions’ between molecules. * Corresponding author. Fax: +91 80 2360 0282. The CH4–HX complexes are important as they can give some in- E-mail address: arunan@ipc.iisc.ernet.in (E. Arunan). sight about the CHþ , which has proven to be a very difficult ion to 5 0009-2614/$ - see front matter Ó 2008 Elsevier B.V. All rights reserved. doi:10.1016/j.cplett.2008.11.009
  • 2.
    38 B. Raghavendra, E. Arunan / Chemical Physics Letters 467 (2008) 37–40 and SH) complexes. Interestingly, a bond critical point is observed in all these complexes connecting the C of CH4 to the H of HX. The bond path goes from H of HX through the tetrahedron plane formed by the three H atoms of methane and connects to the cen- tral C atom. This is similar to what was found in Ref. [1] between the central C atom and the Fe atom through a plane formed by three C atoms! 2. Computational details Fig. 1. (a) Electrostatic potential (ESP) of methane indicating the electron rich Ab initio molecular orbital and AIM theoretical studies have region in light green colour. It is along the centre of the tetrahedron planes. been carried out to gain more insight about both C–HÁ Á ÁO and O– Optimized structures (at MP2/aug-cc-pVTZ level) for H4CÁ Á ÁH2O (b) and H3C– HÁ Á ÁOH2 (c) along with the bond critical points and bond paths from AIM HÁ Á ÁD interactions. Geometry optimization has been carried out calculations. HBCP is the hydrogen bond critical point. (a) ESP, (b) H4CÁ Á ÁH2O, (c) at a reasonably higher level calculation i.e. MP2(FULL)/aug-cc- H3C–HÁ Á ÁOH2. (For interpretation of the references to colour in this figure legend, pVTZ level using the commercial GAUSSIAN-03 software [32]. Fre- the reader is referred to the web version of this article.) quency calculations at the same level were done to calculate the frequency shifts on complex formation as well as to ensure that the optimized geometries are true minima. Single point energies study, both experimentally and theoretically. The detailed analysis at CCSD(T)/aug-cc-pVTZ level were calculated with the optimized of the structure of ðCH5 Þþ is somewhat intriguing and all the evi- geometries in order to get more accurate values of interaction dence indicate that the global minimum can be viewed as a CHþ 3 energies. Four systems were chosen for our study involving CH4 tripod with a H2 moiety attached to the carbon in an eclipsed Cs interaction with HF, HCl, H2O, and H2S, and both C–HÁ Á ÁX and X– configuration [18–20]. Both H2O and NH3 have lone pairs which HÁ Á ÁD geometries were considered. The interaction energies were can not only accept hydrogen bonds but also a proton to form corrected for basis set superposition error using the counterpoise H3 Oþ and NHþ , respectively. Evidently, CH4 does not have a lone 4 method [33]. Wave function for the optimized geometry is gener- pair to accept a hydrogen bond or a proton. Our understanding ated using the key words OUPUT = WFN, DENSITY = CURRENT and about hydrogen bonding has evolved over the last century and it SCF = TIGHT in GAUSSIAN03. The AIM (atoms in molecules) calcula- has been well established now that any electron rich region can tions were done using the AIM 2000 software [34]. Non-bonded ra- act as a hydrogen bond acceptor [21,22]. Ref. [21] defined the dii of acceptor atom and interacting ‘H’ atom were calculated using hydrogen bond as ‘an intermediate range intermolecular interac- MORPHY98 [35,36] program. tion between an electron-deficient hydrogen and a region of high electron density’. Ref. [22] defined the hydrogen bond as ‘an attrac- 3. Results and discussion tive interaction between an electron-deficient hydrogen atom al- ready bonded to one atom and an electron rich region either Table 1 lists the interaction energy, the H–A bond distance, the within the same or with another atom/molecule’. Examples for X–H–A bond angle (A is the H-bond acceptor atom), the increase in the electron rich regions include the traditional lone pairs in H2O bond length of X–H in the complex compared to the monomer and and NH3 [23], p electrons in C2H4 [24], r electrons in H2 [25], the vibrational frequency shift in X–H mode following complex and even an unpaired electron in CH3 radical [26,27]. Where is formation for both X–HÁ Á ÁD and C–HÁ Á ÁX minima. All these results the electron rich region in CH4? Analysis of the molecular electro- are from MP2/aug-cc-pVTZ level calculations. The single point static potential can help in identifying the site of an electrophilic interaction energies calculated at CCSD(T)/aug-cc-pVTZ are also re- attack, in this case the approach of H from the donor [28,29]. A look ported in the Table. These are the traditional parameters that were at the electrostatic potential of CH4 clearly identifies the centre of considered for inferring a hydrogen bond [23,24]. In all four com- each of the four tetrahedron faces as regions of high electron den- plexes investigated, the X–HÁ Á ÁD geometry has a larger complexa- sity (see Fig. 1). Clearly, the hydrogen bond donors such as H2O tion energy compared to C–HÁ Á ÁX geometry. The results from the would have their hydrogen atom approaching this region to form single point CCSD(T) calculations predict the binding energies to the ‘hydrogen bond’. be uniformly lower than those from MP2 calculations but do not Atoms in molecules theory has proved to be quite useful in change the general trend or even the quantitative difference be- understanding bonding [2]. Koch and Popelier have come up with tween the two structures for the same complex. All X–HÁ Á ÁD geom- a set of criteria to characterize interactions involving hydrogen as etries have stabilization energy more than 4 kJ molÀ1 and the C– hydrogen bonding or van der Waals interaction and they have been HÁ Á ÁX geometries have it less than 4 kJ molÀ1. The difference be- extensively used [30,31]. Such an analysis on structures corre- tween the two geometries is higher for CH4Á Á ÁHF/HCl complexes sponding to both minima i.e. C–HÁ Á ÁO and O–HÁ Á ÁD, would be quite ($6.0 kJ molÀ1) compared to CH4Á Á ÁH2O/H2S complexes useful and it is reported in this Letter for CH4Á Á ÁHX (X = F, Cl, OH, ($2.0 kJ molÀ1). Table 1 Interaction energy (E in kJ molÀ1) calculated at MP2/aug-cc-pVTZ level and single point CCSD(T) levels corrected for BSSE. optimized H–A bond distances (RH–A in Å) and bond angles (XHA in °), change in H–X bond length after complex formation (RH–X in Å) and shift in H–X stretching frequency due to complex formation (in cmÀ1). A is the acceptor atom. Complex DE MP2 DE CCSD(T) RH–Aa DXHA DRH–X Dm Complexa DE MP2 DE CCSD(T) RH–Aa DXHA DRH–X Dm H4CÁ Á ÁHF À8.8 À7.9 2.269 (2.20/2.90) 179.5 0.002 60.2 H3C–HÁ Á ÁFH À2.9 À2.2 2.520 (2.43/2.55) 179.3 À0.001 À11.5 H4CÁ Á ÁHCl À9.6 – 2.388 (2.47/2.90) 178.7 0.002 17.2 H3C–HÁ Á ÁClH À3.8 – 2.930 (2.87/3.00) 179.4 0.000 À5.8 H4CÁ Á ÁH2O À6.3 À5.0 2.491 (2.47/2.90) 176.0 0.000 13.8 H3C–HÁ Á ÁOH2 À4.2 À3.3 2.542 (2.47/2.60) 179.3 À0.001 À8.3 H4CÁ Á ÁH2S À6.7 À3.8 2.603 (2.75/2.90) 177.6 0.001 6.2 H3C–HÁ Á ÁSH2 À5.0 À2.4 3.025 (2.90/3.05) 178.2 0.000 À0.6 a Numbers in parentheses are the sums of hydrogen bond radii defined for the corresponding complexes (Ref. [22]) followed by the sums of van der Waals radii of H and the acceptor atom from Ref. [23].
  • 3.
    B. Raghavendra, E.Arunan / Chemical Physics Letters 467 (2008) 37–40 39 All complexes have ‘linear H bonds’ with X–HÁ Á ÁA angle close to a set of eight criteria to settle this issue. Interestingly, most of these 180°. The values vary from 176.0° for H4CÁ Á ÁH2O to 179.5° for criteria were met by all the eight structures investigated here. H4CÁ Á ÁHF. The H–A distances in all these complexes, RH–A, listed According to Koch and Popelier, mutual penetration of H and in Table 1 highlight something important about the hydrogen bond acceptor atoms is the necessary and sufficient condition [30]. Table distances. These are compared to the sum of van der Waals radii 2 lists the values of DrA and DrH, namely the difference between [23] of H and A atoms and also the sum of the recently recom- non-bonded and bonded radii of the acceptor and hydrogen atoms. mended hydrogen bond radii [22] for H and A atoms. The reader These values give a measure of the mutual penetration. The is referred to Ref. [22] for the details of the hydrogen bond radii bonded radius is the distance from the bonded atom to the bond and these are defined for strong, medium and weak hydrogen critical point along the bond path. The non-bonded radius is calcu- bonds. The most striking observation is that the RH–A distances lated as the distance from the atom to the point at which the elec- are significantly smaller than the sum of van der Waals radii for tron density becomes 0.001 au along the bond path in the isolated X–HÁ Á ÁD structures but only marginally smaller for the C–HÁ Á ÁX molecule. For comparison, values for H2OÁ Á ÁHX and ArÁ Á ÁHX are in- structures. These distances are within 0.1 Å from the sum of the cluded in Table 2, the former a typical hydrogen bond for all and hydrogen bond radii recommended for these atoms. More impor- the latter a hydrogen bond for some [2,40]. It is interesting to note tantly, for all the four X–HÁ Á ÁD structures, the RH–C is very close that the sum of DrA and DrH is about 0.7–0.9 Å for X–HÁ Á ÁC struc- to the sum of hydrogen bond radii for H and C and in two cases tures and it is larger than that for the C–HÁ Á ÁX structures, 0.5– (HCl and H2S) it is less than the sum of hydrogen bond radii. How- 0.8 Å. For comparison, the H2OÁ Á ÁHX complexes have this value ever, all the four C–HÁ Á ÁX structures have RH–A slightly larger than in the range 1.1–1.4 Å and the ArÁ Á ÁHX complexes have 0.6–0.9 Å. the sum of hydrogen bond radii of H and A, but within about 0.1 Å, If one looks at DrH alone, it is clear that the H2OÁ Á ÁHX complexes typical uncertainty in these radii. In other words, the X–HÁ Á ÁD have much higher values (0.6–0.8 Å) and the others have values structures have shorter than average H–A distances and the C– of 0.3–0.4 Å. In any case, it is clear that X–HÁ Á ÁC has more ‘hydro- HÁ Á ÁX structures have longer than average H–A distances. All the gen bonding’ nature than what C–HÁ Á ÁX shows, based on this X–HÁ Á ÁD geometries show red-shift in X–H frequencies and the criterion. C–HÁ Á ÁX geometries show small blue shift in C–H stretching fre- Koch and Popelier have also given a range for values of electron quency and these are well established [24,37] for similar hydrogen density and Laplacian of the electron densities at the hydrogen bonded complexes. Clearly, all the traditional criteria employed for BCP. These parameters are also listed in Table 2. The Laplacian val- identifying a hydrogen bond suggest that the X–HÁ Á ÁD structures ues reported in this Table are defined as L ¼ À1=4r2 q as given in qualify better as hydrogen bonds than the C–HÁ Á ÁX structures. Ref. [31]. Electron densities and Laplacian at the hydrogen BCPs are Let us now turn our attention to the results from AIM theoretical well within the range suggested for H-bonds. Here again, X–HÁ Á ÁC calculations which are quite revealing. The most important obser- qualifies as a hydrogen bond better than C–HÁ Á ÁX. For example, vation is that all eight complexes show a (3,À1) bond critical point electron density at the BCP for the complexes of H2OÁ Á ÁHF, along a bond path corresponding to X–HÁ Á ÁD and C–HÁ Á ÁX interac- H4CÁ Á ÁHF, ArÁ Á ÁHF and H3CHÁ Á ÁFH are 0.0436, 0.0121, 0.0158 and tions. Interestingly, for the X–HÁ Á ÁD geometry the bond critical 0.0061 au, respectively. All of them fall within the range (0.002– point (BCP) connects the C from CH4 to H from HX through a bond 0.04 au) quoted by Koch and Popelier for a hydrogen bond. Inter- path (see Fig. 1) and from now on it will be referred to as X–HÁ Á ÁC estingly, the electron density at BCP for CÁ Á ÁHF geometry is twice hydrogen bond. According to Bader, the presence of a (3,À1) criti- that for CHÁ Á ÁF geometry and both are smaller than that of ArÁ Á ÁHF. cal point along the bond path is the necessary and sufficient condi- For H2O and H2S complexes, the electron densities at BCP are very tion for the existence of a bond [2]. Clearly C is bonded to the H of similar ($0.008 au) for both X–HÁ Á ÁC and C–HÁ Á ÁX geometries. The HX and CHþ would have been possible with a penta-coordinate C. 5 Laplacian for all the complexes shown in Table 2 are negative, indi- However, as the proton is approaching the C through the tetrahe- cating that they are all closed shell interactions [31]. dron plane, the H–H interaction starts dominating the intermolec- The other parameters given by Koch and Popelier such as ular potential surface and CHþ ends up with a structure that has 5 change in atomic volume, DV, change in total atomic energy, DE, been experimentally and theoretically found. Evidently, in the case change in atomic population, DN and change in atomic first mo- of H2O and NH3, the proton approaches the central atom away ments, DM, all for the H-bonded hydrogen atom all satisfy the cri- from the hydrogens and these can form the hydronium and ammo- teria for these interactions to be classified as hydrogen bonds. (See nium ions readily. Not surprisingly, attempts to look for NH2þ have 5 Supporting materials) However, one exception is that the change in not been very successful as the second proton is again looking at a atomic population of H, DN, is small but positive for X–HÁ Á ÁC tetrahedron NHþ [38]. On the other hand the existence of H4 O2þ 4 (0.004–0.009) and X–HÁ Á ÁAr complexes and it is negative for both has been shown experimentally and theoretically [39]. X–HÁ Á ÁOH2 and C–HÁ Á ÁX complexes. According to Koch and If one is not satisfied with the criterion by Bader for classifica- Popelier criteria, it should have been negative for hydrogen bonded tion as hydrogen bonding, Koch and Popelier [30,31] have given complexes. Interestingly, they have pointed out that for FHÁ Á ÁPH3 Table 2 Atoms in molecule theoretical parameters for the eight complexes under investigation and the analogous Ar and H2O complexesa. Complex qb Lb r0 c A rAc rAd r0 c H rHc rHd Complex qb Lb r0 c A rAc rAd r0 c H rHc rHd H4CÁ Á ÁHF 0.01208 À0.01156 2.0 1.5 0.5 1.1 0.8 0.3 H3C–HÁ Á ÁFH 0.00605 À0.00618 1.7 1.5 0.2 1.4 1.1 0.3 H4CÁ Á ÁHCl 0.01066 À0.01015 2.0 1.5 0.5 1.3 0.9 0.4 H3C–HÁ Á ÁClH 0.00591 À0.00483 2.2 1.8 0.4 1.4 1.1 0.3 H4CÁ Á ÁH2O 0.00795 À0.00827 2.0 1.6 0.4 1.2 0.9 0.3 H3C–HÁ Á ÁOH2 0.00723 À0.00669 1.9 1.5 0.4 1.4 1.0 0.4 H4CÁ Á ÁH2S 0.00738 À0.00715 2.0 1.6 0.4 1.4 1.0 0.4 H3C–HÁ Á ÁSH2 0.00624 À0.00432 2.3 1.9 0.4 1.4 1.1 0.3 H2OÁ Á ÁHF 0.04356 À0.02625 1.9 1.2 0.7 1.1 0.5 0.6 ArÁ Á ÁHF 0.01584 À0.01394 2.0 1.5 0.5 1.1 0.7 0.4 H2OÁ Á ÁHCl 0.03503 À0.02388 1.9 1.2 0.7 1.3 0.6 0.7 ArÁ Á ÁHCl 0.00941 À0.00876 2.0 1.6 0.4 1.3 0.9 0.4 H2OÁ Á ÁH2O 0.02581 À0.02109 1.9 1.3 0.6 1.2 0.7 0.5 ArÁ Á ÁH2O 0.00805 À0.00804 2.0 1.6 0.4 1.2 0.9 0.3 H2OÁ Á ÁH2S 0.01694 À0.01633 1.9 1.3 0.6 1.4 0.8 0.6 ArÁ Á ÁH2S 0.00690 À0.00635 2.0 1.7 0.3 1.4 1.1 0.3 a Results from calculation at MP2(FULL)/aug-cc-pVTZ level. b Electron density at HBCP, q, and Laplacian of the electron density at HBCP, L defined as L ¼ À1=4r2 q. c Non-bonded radii of the acceptor atom and hydrogen atom, r 0 and r 0 , and bonded radii of acceptor and hydrogen atoms, rA and rH in Å. A H d rA = (r0 À rA ) and rH = (r0 À r H ) which are the penetration parameters in Å. A A
  • 4.
    40 B. Raghavendra, E. Arunan / Chemical Physics Letters 467 (2008) 37–40 complex, which they had classified as a hydrogen bonded complex, References the DN was found to be small and positive. This was attributed to possible errors in integration. In any case, according to seven of the [1] L.J. Farrugia, C. Evans, M. Tegel, J. Phys. Chem. A 110 (2006) 7952. [2] R.F.W. Bader, Atoms in Molecules: A Quantum Theory, Clarendon Press, eight criteria given by Koch and Popelier [30], and the conventional Oxford, 1990. wisdom (stabilization energy, H–A distance, elongation of X–H [3] R.D. Suenram, G.T. Fraser, F.J. Lovas, Y. Kawashima, J. Chem. Phys. 101 (1994) bond and red-shift in the X–H vibrational frequency), X–HÁ Á ÁC 7230. ´ ´ [4] M.M. Szczçsniak, G. Chałasinski, S.M. Cybulski, P. Cieplak, J. Chem. Phys. 98 interaction is attractive hydrogen bonding interactions. It is more (1993) 3078. so than the C–HÁ Á ÁX interaction that is often discussed with respect [5] J.J. Novoa, B. 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