How CRE effects dsx expression          

            to establish and modify 

          sexual dimorphic traits"
                           Presenter: Peng, Yi-Hung"
                           PI: Artyom Copp"




♀	

                                   ♂
Background"
of Drosophila’s Sexual Dimorphism
     and dsx (doublesex gene)"
Sexual Dimorphism"
The differences between Male and Female

            (性別二型性)"
Model Organism:

Drosophila melanogaster"
      A kind of fruit flies"
♂	

         Sex Comb (性梳)"
       The sexual Dimorphic trait of
          Male D. melanogaster"
♀	

   No Sex Comb"
Sex Comb is a good example of 

  Sexual Dimorphism!


     What causes this?!
dsx!
Drosophila double sex gene"
XY	

                                   XX	


    ♂	

       Sxl	

               tra	

                                           ♀	

        Sxl	

                                                         tra	

                        fru M	

                                            fru	

    dsx M	

                                   F	

                                           dsx



 dsx (double sex gene)                "


establishes and modifies sexual dimorphic
    traits of Drosophila melanogaster"
                                                Greenspan et al. Annual Review of Genetics 2000
♂	

                    ♀	

                dsx M	

               dsx F	





      Male"                 Origin"               Female"


dsx s role"
in D. melanogaster is to break down
intralocus sexual conflict in the other."
                                                   Tanaka el al PLOS Biology Reviews 2011
How"dsx break down "
intralocus sexual conflict?"
Family of!
DM domain 

  genes!




                                 Share a common DNA binding domain!


    dsx is in the family of DM domain genes"
   DM domain genes share the same characteristic DM DNA binding site;
   dsxM and dsxF both share a common binding domain"
Common DNA binding domain

                 DSX F & DSX M"
DSX F/M!


                         Bind, Control, 

                    Expression or Repression!

           5’!                                         3’!



                        Gene’s binding site for DSX!



A gene must gain a binding    site for dsx to be
             expressed sex specifically."
On the other hand…"

                     The DSX (protein product of dsx gene) is 

                     Not expressed in all cells"




                                                                  DSX Expression Region!




Robinett el al PLOS Biology Reviews 2010
Something else determined
  the expression of dsx!
CRE"
    cis Regulatory Element 

of Drosophila double sex gene"
CREs for dsx gene!       dsx gene!

5’!                                    3’!

                             +	

 CRE enhance dsx gene expression!
                                     DSX is produced!



                                                     Common binding domain

                                     DSX F/M!        Dsx F & Dsx M!

                                                          Bind, Control, 

                                                     Expression or Repression!
  Roles of CREs 

  (Cis Regulatory Elements)"               5’!                                   3’!


                                                 Gene’s binding site for dsx!
Other"
Drosophila species’ dsx expression"
D. willistoni
D. virilis (pic D,hydei)




The sexually dimorphic structure of the sex combs
differ greatly over a "

Short evolutionary time"
                                             Kopp, EVOLUTION & DEVELOPMENT 2012
Kopp, EVOLUTION & DEVELOPMENT 2012
melanogaster	


dsx expression is correlated with sex comb "
not only in Drosophila melanogaster "
but also with these closely related species."

                                                Kopp, EVOLUTION & DEVELOPMENT 2012
This raises the question,"

        Does dsx simply break down
        interlocus sexual conflict……"
        "
        Or does it also play a role in
        regulation within a sex in
        determining the optimal spatial,
        temporal, and level of
        expression?"
To know the answer, we need to"

     Compare the CREs of dsx
   between species of Drosophila"
Under the model of the sex comb, there are
Two paths:"


           Enhancer Bashing"
           Establish the minimal CRE within D. mel"
           to see if there is any CRE inside these introns "



           Testing of the homologous regions"
           Establish the approximate region with
           species within the melanogaster and
           obscura species groups."
dsx gene"




Exons (Coding Regions in dsx)! Introns (Non-Coding Regions in dsx)!


 Enhancer Bashing"
 to see if there is any CRE inside these introns "
1"   2"
3"   4"
Methods"
Of Enhancer Bashing (Looking for CRE) "
dsx gene"

Exons (Coding Regions in dsx)! Introns (Non-Coding Regions in dsx)!
     Intron   1"                           PCR!                Add Gal4 

         Intron    2"                               (a Transcription Factor gene) 

                        Intron   3.1"                  into different introns 

                                    Intron 3.2"
                                                                   of dsx!
                                              Intron 3.3"
                                                                                      Gal4!
                                                         Intron 3.4"

                                                                  Intron 3.5"

                                                                              Intron 4"

          Create Different 
                                         Intron   5"
      intron - Gal4 Line 

          D. melanogaster "
UAS-GFP!           X!        Different 

Collect Virgin
            intron - Gal4!
Female Only!



 ♀	

                         ♂	

Collect   F1 (First offspring generation) Only!
F1 (First offspring generation) Genotype"



5’!                                    Chromosome from Gal4 Line!    3’!
              Different intron position of dsx!     Gal4!


                                  X!
5’!                                    Chromosome from UAS-GFP Line! 3’!
             UAS!                      GFP gene!
                         *GFP: Green fluorescent protein (綠螢光蛋白)
F1 (First offspring generation) Genotype"

                    Different intron 

                    position of dsx!        Activate!

5’!                  With CRE"                             +	

      3’!
              Different intron position of dsx!         Gal4!
                                                     Produce Gal4!
               Bind and             Gal4"
             activate UAS!
5’!                                                                  3’!
             UAS!                        GFP gene!
                             Activate!        +
Crossing Lines"
of intron-Gal4 line and UAS-GFP line"
Collection: White Prepupal	

Collect 2 developmental stages: "
5 hr. & 24 hr."


                        Pupal"



Primary Dissection and Fixation	

Add Paraformaldehyde

for Fixation"
Dissection	

Dissecting 2 developmental stages: "
5 hr. & 24 hr."




 Dissection Work!   5 hr Pupal's Leg! 24 hr Pupal's Leg!
Slides Making"
Different Gender, Developmental Stage and
Different Lines!




      Polylysine slide!
Results"
of Enhancer Bashing (Looking for CRE) "
Exons (Coding Regions in dsx)!    Introns (Non-Coding Regions in dsx)!



                                                         dsx gene"
                                                        Previous Work 

                                                        by Gavin Rice!


                                                        Enhancer Bashing 

                                                        by Peng, Yi-Hung!
[79]! [51]!          [64]!    [12A]!           [27c]!
                     [12]!
                     [ 8 ]!




Enhancer Bashing"
to see if there is any CRE inside these introns "
dsx gene"




  dsx intron 3.1 

  (first 5 kb)"
  Male, 24 hours"
                            Antibody
                     GFP"
                            Staining"
dsx gene"




dsx intron 3.1 

the 0-3 kb!


dsx intron 3.1 

the 2-5 kb!
dsx gene"




dsx intron 3.1 

the 0-3 kb!


dsx intron 3.1 

the 2-5 kb!



   Male, 36 hours"
                            Antibody
                     GFP"
                            Staining"
dsx gene"




dsx intron 3.1 

the 0-3 kb!


dsx intron 3.1 

the 2-5 kb!



   Male, 36 hours"
                            Antibody
                     GFP"
                            Staining"
dsx intron 3.1 

the 0-3 kb!
                              So we are sure that there is a "
                   CRE in dsx intron 3.1 the 0-3kb"
How about the other introns?"
doublesex and the Evolution of Sexual Dimorphism




5 hr               
         PLoS Biology | www.plosbiology.org   3     August 2011 | Volume 9 | Issue 8 | e1001131




Developemental Stage"
Previous study suggested that the
dsx Do express in this stage."
We got nothing in "

5hr Developmental Stage!
So, we look into   24 hr 

 Developmental Stage……!
            !
dsx gene"

 [79]! [51]!        [64]!       [12A]!           [27c]!
                    [12]!
                    [ 8 ]!
                        ti 1"            ti 1"




  dsx intron 2 
        ti 2"            ti 2"            ti 1"
  Male, 24 hours"                                                       ti 2"
                                                              (Previous)
                             Video"          GFP"          Antibody Staining"
ti 1"         ti 1"




dsx intron 2 
                                  ti 1"
Female, 24 hours"                                             ti 2"
                    ti 2"        ti 2"              (Previous)
                        Video"           GFP"    Antibody Staining"
dsx intron 2 

                 Male and Female, 24 hours"




GFP"     ti 1"             ti 2"   ti 3"      ti 4"   ti 5"




Video"   ti 1"             ti 2"   ti 3"      ti 4"   ti 5"
CRE in dsx intron 2?"


    Different Pattern of Expression and
           Monomorphic characteristic
            “might” due to the effect of"
        Shadow Enhancer"
Future Work"
of Enhancer Bashing (Looking for CRE) "
ti 1"          ti 1"


                                                          New 

                                                        Antibody
                               ti 1"         ti 1"
                                                         Staining
                                                            for
                                                        Reference"
ti 2"          ti 2"                                   ti 1"
                                                                      ti 2"
                              ti 2"         ti 2"        (Previous)
    Video"             GFP"      Video"         GFP"   Antibody Staining"



             ♂	

                         ♀	

Antibody Staining"
dsx gene"


                                                Previous Work 

                                                by Gavin Rice!

                                                Enhancer Bashing 

                                                by Peng, Yi-Hung!
  [79]! [51]!        [64]!    [12A]!   [27c]!




                                        ……	

          ……	





                               ……	

  ……	





                     [12]!
                  ……	



                     [ 8 ]!



          dsx must also exist in in 5hr places !
            No CRE was found other Stage!
                                                Future Work!


Further Enhancer Bashing"
Artyom Kopp"   Gavin Rice"


Acknowledgements"




                              Olga 

                              Barmina"
Thank you"

UC Davis GREAT Program Final Presentation

  • 1.
    How CRE effectsdsx expression 
 to establish and modify 
 sexual dimorphic traits" Presenter: Peng, Yi-Hung" PI: Artyom Copp" ♀ ♂
  • 2.
    Background" of Drosophila’s SexualDimorphism and dsx (doublesex gene)"
  • 3.
    Sexual Dimorphism" The differencesbetween Male and Female
 (性別二型性)"
  • 4.
  • 5.
    Sex Comb (性梳)" The sexual Dimorphic trait of Male D. melanogaster"
  • 6.
    No Sex Comb"
  • 7.
    Sex Comb isa good example of 
 Sexual Dimorphism! What causes this?!
  • 8.
  • 9.
    XY XX ♂ Sxl tra ♀ Sxl tra fru M fru dsx M F dsx dsx (double sex gene) " establishes and modifies sexual dimorphic traits of Drosophila melanogaster" Greenspan et al. Annual Review of Genetics 2000
  • 10.
    ♀ dsx M dsx F Male" Origin" Female" dsx s role" in D. melanogaster is to break down intralocus sexual conflict in the other." Tanaka el al PLOS Biology Reviews 2011
  • 11.
    How"dsx break down" intralocus sexual conflict?"
  • 12.
    Family of! DM domain
 genes! Share a common DNA binding domain! dsx is in the family of DM domain genes" DM domain genes share the same characteristic DM DNA binding site; dsxM and dsxF both share a common binding domain"
  • 13.
    Common DNA bindingdomain
 DSX F & DSX M" DSX F/M! Bind, Control, 
 Expression or Repression! 5’! 3’! Gene’s binding site for DSX! A gene must gain a binding site for dsx to be expressed sex specifically."
  • 14.
    On the otherhand…" The DSX (protein product of dsx gene) is 
 Not expressed in all cells" DSX Expression Region! Robinett el al PLOS Biology Reviews 2010
  • 15.
    Something else determined the expression of dsx!
  • 16.
    CRE" cis Regulatory Element 
 of Drosophila double sex gene"
  • 17.
    CREs for dsxgene! dsx gene! 5’! 3’! + CRE enhance dsx gene expression! DSX is produced! Common binding domain
 DSX F/M! Dsx F & Dsx M! Bind, Control, 
 Expression or Repression! Roles of CREs 
 (Cis Regulatory Elements)" 5’! 3’! Gene’s binding site for dsx!
  • 19.
  • 20.
    D. willistoni D. virilis(pic D,hydei) The sexually dimorphic structure of the sex combs differ greatly over a " Short evolutionary time" Kopp, EVOLUTION & DEVELOPMENT 2012
  • 21.
    Kopp, EVOLUTION &DEVELOPMENT 2012
  • 22.
    melanogaster dsx expression iscorrelated with sex comb " not only in Drosophila melanogaster " but also with these closely related species." Kopp, EVOLUTION & DEVELOPMENT 2012
  • 23.
    This raises thequestion," Does dsx simply break down interlocus sexual conflict……" " Or does it also play a role in regulation within a sex in determining the optimal spatial, temporal, and level of expression?"
  • 24.
    To know theanswer, we need to" Compare the CREs of dsx between species of Drosophila"
  • 25.
    Under the modelof the sex comb, there are Two paths:" Enhancer Bashing" Establish the minimal CRE within D. mel" to see if there is any CRE inside these introns " Testing of the homologous regions" Establish the approximate region with species within the melanogaster and obscura species groups."
  • 26.
    dsx gene" Exons (CodingRegions in dsx)! Introns (Non-Coding Regions in dsx)! Enhancer Bashing" to see if there is any CRE inside these introns "
  • 27.
    1" 2" 3" 4"
  • 28.
    Methods" Of Enhancer Bashing(Looking for CRE) "
  • 29.
    dsx gene" Exons (CodingRegions in dsx)! Introns (Non-Coding Regions in dsx)! Intron 1" PCR! Add Gal4 
 Intron 2" (a Transcription Factor gene) 
 Intron 3.1" into different introns 
 Intron 3.2" of dsx! Intron 3.3" Gal4! Intron 3.4" Intron 3.5" Intron 4" Create Different 
 Intron 5" intron - Gal4 Line 
 D. melanogaster "
  • 30.
    UAS-GFP! X! Different 
 Collect Virgin
 intron - Gal4! Female Only! ♀ ♂ Collect F1 (First offspring generation) Only!
  • 31.
    F1 (First offspringgeneration) Genotype" 5’! Chromosome from Gal4 Line! 3’! Different intron position of dsx! Gal4! X! 5’! Chromosome from UAS-GFP Line! 3’! UAS! GFP gene! *GFP: Green fluorescent protein (綠螢光蛋白)
  • 32.
    F1 (First offspringgeneration) Genotype" Different intron 
 position of dsx! Activate! 5’! With CRE" + 3’! Different intron position of dsx! Gal4! Produce Gal4! Bind and Gal4" activate UAS! 5’! 3’! UAS! GFP gene! Activate! +
  • 33.
    Crossing Lines" of intron-Gal4line and UAS-GFP line"
  • 34.
    Collection: White Prepupal Collect2 developmental stages: " 5 hr. & 24 hr." Pupal" Primary Dissection and Fixation Add Paraformaldehyde
 for Fixation"
  • 35.
    Dissection Dissecting 2 developmentalstages: " 5 hr. & 24 hr." Dissection Work! 5 hr Pupal's Leg! 24 hr Pupal's Leg!
  • 36.
    Slides Making" Different Gender,Developmental Stage and Different Lines! Polylysine slide!
  • 38.
    Results" of Enhancer Bashing(Looking for CRE) "
  • 39.
    Exons (Coding Regionsin dsx)! Introns (Non-Coding Regions in dsx)! dsx gene" Previous Work 
 by Gavin Rice! Enhancer Bashing 
 by Peng, Yi-Hung! [79]! [51]! [64]! [12A]! [27c]! [12]! [ 8 ]! Enhancer Bashing" to see if there is any CRE inside these introns "
  • 40.
    dsx gene" dsx intron 3.1 
 (first 5 kb)" Male, 24 hours" Antibody GFP" Staining"
  • 41.
    dsx gene" dsx intron3.1 
 the 0-3 kb! dsx intron 3.1 
 the 2-5 kb!
  • 42.
    dsx gene" dsx intron3.1 
 the 0-3 kb! dsx intron 3.1 
 the 2-5 kb! Male, 36 hours" Antibody GFP" Staining"
  • 43.
    dsx gene" dsx intron3.1 
 the 0-3 kb! dsx intron 3.1 
 the 2-5 kb! Male, 36 hours" Antibody GFP" Staining"
  • 44.
    dsx intron 3.1
 the 0-3 kb! So we are sure that there is a " CRE in dsx intron 3.1 the 0-3kb"
  • 45.
    How about theother introns?"
  • 46.
    doublesex and theEvolution of Sexual Dimorphism 5 hr 
 PLoS Biology | www.plosbiology.org 3 August 2011 | Volume 9 | Issue 8 | e1001131 Developemental Stage" Previous study suggested that the dsx Do express in this stage."
  • 47.
    We got nothingin " 5hr Developmental Stage! So, we look into 24 hr 
 Developmental Stage……! !
  • 48.
    dsx gene" [79]![51]! [64]! [12A]! [27c]! [12]! [ 8 ]! ti 1" ti 1" dsx intron 2 
 ti 2" ti 2" ti 1" Male, 24 hours" ti 2" (Previous) Video" GFP" Antibody Staining"
  • 49.
    ti 1" ti 1" dsx intron 2 
 ti 1" Female, 24 hours" ti 2" ti 2" ti 2" (Previous) Video" GFP" Antibody Staining"
  • 50.
    dsx intron 2
 Male and Female, 24 hours" GFP" ti 1" ti 2" ti 3" ti 4" ti 5" Video" ti 1" ti 2" ti 3" ti 4" ti 5"
  • 51.
    CRE in dsxintron 2?" Different Pattern of Expression and Monomorphic characteristic “might” due to the effect of" Shadow Enhancer"
  • 52.
    Future Work" of EnhancerBashing (Looking for CRE) "
  • 53.
    ti 1" ti 1" New 
 Antibody ti 1" ti 1" Staining for Reference" ti 2" ti 2" ti 1" ti 2" ti 2" ti 2" (Previous) Video" GFP" Video" GFP" Antibody Staining" ♂ ♀ Antibody Staining"
  • 54.
    dsx gene" Previous Work 
 by Gavin Rice! Enhancer Bashing 
 by Peng, Yi-Hung! [79]! [51]! [64]! [12A]! [27c]! …… …… …… …… [12]! …… [ 8 ]! dsx must also exist in in 5hr places ! No CRE was found other Stage! Future Work! Further Enhancer Bashing"
  • 55.
    Artyom Kopp" Gavin Rice" Acknowledgements" Olga 
 Barmina"
  • 56.