G protein-coupled receptors (GPCRs) are integral membrane proteins that detect extracellular molecules and signal intracellular pathways. They have seven transmembrane domains and interact with G proteins. There are two principal signaling pathways: 1) the cAMP pathway, where the G protein activates adenylyl cyclase to produce cAMP, which activates protein kinase A and regulates genes and secretion; and 2) the phosphatidylinositol pathway, where the G protein activates phospholipase C to produce IP3 and DAG, which trigger calcium release and activate protein kinase C to phosphorylate target proteins and induce cellular responses. These pathways are connected by calcium-calmodulin, which regulates enzymes in both routes.
The signal transduction pathway uses a network of interactions within cells, among cells, and throughout plant.
The external signals that affect plant growth and development include many aspects of the plant’s physical, chemical, and biological environments. Some external signals come from other plants.
Many signals interact cooperatively and synergistically with each other to produce the final response. Signal combinations that induce such complex plant responses include red and blue light, gravity and light, growth regulators and mineral nutrients .
For example the overall regulation of seed germination involves control by both external factors and internal signals.
G PROTEIN COUPLED RECEPTORS(GPCRs) Cell Membrane ReceptorMerlin890676
G-protein coupled receptors (GPCRs)
Are cell membrane receptors
7 α-helical membrane spanning hydrophobic amino acid (AA) domain with 3 extracellular and 3 intracellular loops
The G-proteins has three subunits
α, β and γ
In the inactive state GDP is bound to the α subunit
Ligand binding activate the receptor and leads to displacement of GDP by GTP.
Three major effector pathways
(a) Adenylyl cyclase: cAMP pathway
(b) Phospholipase C: IP3-DAG pathway
(c) Channel regulation
Activation of AC by α subunit of Gs results in intracellular accumulation of second messenger cAMP
which functions through cAMP-dependent protein kinase (PKA).
The PKA phosphorylates and alters the function of many enzymes, ion
channels, transporters, transcription factors and structural proteins
to manifest as increased contractility/impulse generation (heart), relaxation (smooth muscle), glycogenolysis, lipolysis inhibition of secretion/mediator release, modulation of junctional transmission, water conservation by kidney, steroid hormone synthesis, etc.
Eg. Adrenaline
Inhibition of AC by α subunit of Gi results in inhibition of formation of second messenger cAMP
Opening of K+ channels
Eg. Acetyl choline M2 receptors
Activation of phospholipase Cβ (PLcβ) by α subunit of Gq hydrolyses
phospholipid phosphatidyl inositol 4,5-bisphosphate (PIP2)
to generate the second messengers inositol 1,4,5-trisphosphate (IP3) and diacylglycerol (DAG).
The IP3being water soluble diffuses to the cytosol and mobilizes Ca2+ from endoplasmic reticular depots.
The lipophilic DAG remains within the membrane, but recruits protein kinase C (PKc) and activates it with the help of Ca2+.
The activated PKc phosphorylates many intracellular proteins and mediates various physiological responses.
Eg.Histamine H1 Receptor
The activated Gproteins (Gs, Gi, Go)
open or inhibit ionic channels specific for Ca2+ and K+ without the intervention of any second messenger like cAMP or IP3
bring about hyperpolarization/depolarization/changes in intracellular Ca2+ concentration.
The Gs opens Ca2+ channels in myocardium and skeletal muscles
while Gi and Go open K+ channels in heart and smooth muscle as well as inhibit neuronal Ca2+ channels
Signal transducing machinery as targets for potential drugs.
Drugs:-
a). Diclofenac- for treating cholera toxin
b). Fasentin- for treating insulin signalling
The signal transduction pathway uses a network of interactions within cells, among cells, and throughout plant.
The external signals that affect plant growth and development include many aspects of the plant’s physical, chemical, and biological environments. Some external signals come from other plants.
Many signals interact cooperatively and synergistically with each other to produce the final response. Signal combinations that induce such complex plant responses include red and blue light, gravity and light, growth regulators and mineral nutrients .
For example the overall regulation of seed germination involves control by both external factors and internal signals.
G PROTEIN COUPLED RECEPTORS(GPCRs) Cell Membrane ReceptorMerlin890676
G-protein coupled receptors (GPCRs)
Are cell membrane receptors
7 α-helical membrane spanning hydrophobic amino acid (AA) domain with 3 extracellular and 3 intracellular loops
The G-proteins has three subunits
α, β and γ
In the inactive state GDP is bound to the α subunit
Ligand binding activate the receptor and leads to displacement of GDP by GTP.
Three major effector pathways
(a) Adenylyl cyclase: cAMP pathway
(b) Phospholipase C: IP3-DAG pathway
(c) Channel regulation
Activation of AC by α subunit of Gs results in intracellular accumulation of second messenger cAMP
which functions through cAMP-dependent protein kinase (PKA).
The PKA phosphorylates and alters the function of many enzymes, ion
channels, transporters, transcription factors and structural proteins
to manifest as increased contractility/impulse generation (heart), relaxation (smooth muscle), glycogenolysis, lipolysis inhibition of secretion/mediator release, modulation of junctional transmission, water conservation by kidney, steroid hormone synthesis, etc.
Eg. Adrenaline
Inhibition of AC by α subunit of Gi results in inhibition of formation of second messenger cAMP
Opening of K+ channels
Eg. Acetyl choline M2 receptors
Activation of phospholipase Cβ (PLcβ) by α subunit of Gq hydrolyses
phospholipid phosphatidyl inositol 4,5-bisphosphate (PIP2)
to generate the second messengers inositol 1,4,5-trisphosphate (IP3) and diacylglycerol (DAG).
The IP3being water soluble diffuses to the cytosol and mobilizes Ca2+ from endoplasmic reticular depots.
The lipophilic DAG remains within the membrane, but recruits protein kinase C (PKc) and activates it with the help of Ca2+.
The activated PKc phosphorylates many intracellular proteins and mediates various physiological responses.
Eg.Histamine H1 Receptor
The activated Gproteins (Gs, Gi, Go)
open or inhibit ionic channels specific for Ca2+ and K+ without the intervention of any second messenger like cAMP or IP3
bring about hyperpolarization/depolarization/changes in intracellular Ca2+ concentration.
The Gs opens Ca2+ channels in myocardium and skeletal muscles
while Gi and Go open K+ channels in heart and smooth muscle as well as inhibit neuronal Ca2+ channels
Signal transducing machinery as targets for potential drugs.
Drugs:-
a). Diclofenac- for treating cholera toxin
b). Fasentin- for treating insulin signalling
A microarray is a laboratory tool used to detect the expression of thousands of genes at the same time. DNA microarrays are microscope slides that are printed with thousands of tiny spots in defined positions, with each spot containing a known DNA sequence or gene.
Cancer cell metabolism: special Reference to Lactate PathwayAADYARAJPANDEY1
Normal Cell Metabolism:
Cellular respiration describes the series of steps that cells use to break down sugar and other chemicals to get the energy we need to function.
Energy is stored in the bonds of glucose and when glucose is broken down, much of that energy is released.
Cell utilize energy in the form of ATP.
The first step of respiration is called glycolysis. In a series of steps, glycolysis breaks glucose into two smaller molecules - a chemical called pyruvate. A small amount of ATP is formed during this process.
Most healthy cells continue the breakdown in a second process, called the Kreb's cycle. The Kreb's cycle allows cells to “burn” the pyruvates made in glycolysis to get more ATP.
The last step in the breakdown of glucose is called oxidative phosphorylation (Ox-Phos).
It takes place in specialized cell structures called mitochondria. This process produces a large amount of ATP. Importantly, cells need oxygen to complete oxidative phosphorylation.
If a cell completes only glycolysis, only 2 molecules of ATP are made per glucose. However, if the cell completes the entire respiration process (glycolysis - Kreb's - oxidative phosphorylation), about 36 molecules of ATP are created, giving it much more energy to use.
IN CANCER CELL:
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
introduction to WARBERG PHENOMENA:
WARBURG EFFECT Usually, cancer cells are highly glycolytic (glucose addiction) and take up more glucose than do normal cells from outside.
Otto Heinrich Warburg (; 8 October 1883 – 1 August 1970) In 1931 was awarded the Nobel Prize in Physiology for his "discovery of the nature and mode of action of the respiratory enzyme.
WARNBURG EFFECT : cancer cells under aerobic (well-oxygenated) conditions to metabolize glucose to lactate (aerobic glycolysis) is known as the Warburg effect. Warburg made the observation that tumor slices consume glucose and secrete lactate at a higher rate than normal tissues.
Nutraceutical market, scope and growth: Herbal drug technologyLokesh Patil
As consumer awareness of health and wellness rises, the nutraceutical market—which includes goods like functional meals, drinks, and dietary supplements that provide health advantages beyond basic nutrition—is growing significantly. As healthcare expenses rise, the population ages, and people want natural and preventative health solutions more and more, this industry is increasing quickly. Further driving market expansion are product formulation innovations and the use of cutting-edge technology for customized nutrition. With its worldwide reach, the nutraceutical industry is expected to keep growing and provide significant chances for research and investment in a number of categories, including vitamins, minerals, probiotics, and herbal supplements.
Introduction:
RNA interference (RNAi) or Post-Transcriptional Gene Silencing (PTGS) is an important biological process for modulating eukaryotic gene expression.
It is highly conserved process of posttranscriptional gene silencing by which double stranded RNA (dsRNA) causes sequence-specific degradation of mRNA sequences.
dsRNA-induced gene silencing (RNAi) is reported in a wide range of eukaryotes ranging from worms, insects, mammals and plants.
This process mediates resistance to both endogenous parasitic and exogenous pathogenic nucleic acids, and regulates the expression of protein-coding genes.
What are small ncRNAs?
micro RNA (miRNA)
short interfering RNA (siRNA)
Properties of small non-coding RNA:
Involved in silencing mRNA transcripts.
Called “small” because they are usually only about 21-24 nucleotides long.
Synthesized by first cutting up longer precursor sequences (like the 61nt one that Lee discovered).
Silence an mRNA by base pairing with some sequence on the mRNA.
Discovery of siRNA?
The first small RNA:
In 1993 Rosalind Lee (Victor Ambros lab) was studying a non- coding gene in C. elegans, lin-4, that was involved in silencing of another gene, lin-14, at the appropriate time in the
development of the worm C. elegans.
Two small transcripts of lin-4 (22nt and 61nt) were found to be complementary to a sequence in the 3' UTR of lin-14.
Because lin-4 encoded no protein, she deduced that it must be these transcripts that are causing the silencing by RNA-RNA interactions.
Types of RNAi ( non coding RNA)
MiRNA
Length (23-25 nt)
Trans acting
Binds with target MRNA in mismatch
Translation inhibition
Si RNA
Length 21 nt.
Cis acting
Bind with target Mrna in perfect complementary sequence
Piwi-RNA
Length ; 25 to 36 nt.
Expressed in Germ Cells
Regulates trnasposomes activity
MECHANISM OF RNAI:
First the double-stranded RNA teams up with a protein complex named Dicer, which cuts the long RNA into short pieces.
Then another protein complex called RISC (RNA-induced silencing complex) discards one of the two RNA strands.
The RISC-docked, single-stranded RNA then pairs with the homologous mRNA and destroys it.
THE RISC COMPLEX:
RISC is large(>500kD) RNA multi- protein Binding complex which triggers MRNA degradation in response to MRNA
Unwinding of double stranded Si RNA by ATP independent Helicase
Active component of RISC is Ago proteins( ENDONUCLEASE) which cleave target MRNA.
DICER: endonuclease (RNase Family III)
Argonaute: Central Component of the RNA-Induced Silencing Complex (RISC)
One strand of the dsRNA produced by Dicer is retained in the RISC complex in association with Argonaute
ARGONAUTE PROTEIN :
1.PAZ(PIWI/Argonaute/ Zwille)- Recognition of target MRNA
2.PIWI (p-element induced wimpy Testis)- breaks Phosphodiester bond of mRNA.)RNAse H activity.
MiRNA:
The Double-stranded RNAs are naturally produced in eukaryotic cells during development, and they have a key role in regulating gene expression .
Seminar of U.V. Spectroscopy by SAMIR PANDASAMIR PANDA
Spectroscopy is a branch of science dealing the study of interaction of electromagnetic radiation with matter.
Ultraviolet-visible spectroscopy refers to absorption spectroscopy or reflect spectroscopy in the UV-VIS spectral region.
Ultraviolet-visible spectroscopy is an analytical method that can measure the amount of light received by the analyte.
A brief information about the SCOP protein database used in bioinformatics.
The Structural Classification of Proteins (SCOP) database is a comprehensive and authoritative resource for the structural and evolutionary relationships of proteins. It provides a detailed and curated classification of protein structures, grouping them into families, superfamilies, and folds based on their structural and sequence similarities.
Richard's entangled aventures in wonderlandRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
This presentation explores a brief idea about the structural and functional attributes of nucleotides, the structure and function of genetic materials along with the impact of UV rays and pH upon them.
Comparing Evolved Extractive Text Summary Scores of Bidirectional Encoder Rep...University of Maribor
Slides from:
11th International Conference on Electrical, Electronics and Computer Engineering (IcETRAN), Niš, 3-6 June 2024
Track: Artificial Intelligence
https://www.etran.rs/2024/en/home-english/
Multi-source connectivity as the driver of solar wind variability in the heli...Sérgio Sacani
The ambient solar wind that flls the heliosphere originates from multiple
sources in the solar corona and is highly structured. It is often described
as high-speed, relatively homogeneous, plasma streams from coronal
holes and slow-speed, highly variable, streams whose source regions are
under debate. A key goal of ESA/NASA’s Solar Orbiter mission is to identify
solar wind sources and understand what drives the complexity seen in the
heliosphere. By combining magnetic feld modelling and spectroscopic
techniques with high-resolution observations and measurements, we show
that the solar wind variability detected in situ by Solar Orbiter in March
2022 is driven by spatio-temporal changes in the magnetic connectivity to
multiple sources in the solar atmosphere. The magnetic feld footpoints
connected to the spacecraft moved from the boundaries of a coronal hole
to one active region (12961) and then across to another region (12957). This
is refected in the in situ measurements, which show the transition from fast
to highly Alfvénic then to slow solar wind that is disrupted by the arrival of
a coronal mass ejection. Our results describe solar wind variability at 0.5 au
but are applicable to near-Earth observatories.
THE IMPORTANCE OF MARTIAN ATMOSPHERE SAMPLE RETURN.Sérgio Sacani
The return of a sample of near-surface atmosphere from Mars would facilitate answers to several first-order science questions surrounding the formation and evolution of the planet. One of the important aspects of terrestrial planet formation in general is the role that primary atmospheres played in influencing the chemistry and structure of the planets and their antecedents. Studies of the martian atmosphere can be used to investigate the role of a primary atmosphere in its history. Atmosphere samples would also inform our understanding of the near-surface chemistry of the planet, and ultimately the prospects for life. High-precision isotopic analyses of constituent gases are needed to address these questions, requiring that the analyses are made on returned samples rather than in situ.
2. Receptors are the sensing element in the
system of chemical communication that
coodinates the functions of all the different
cells in the body.
Chemical messengers or signalling
molecules can be hormones transmitters and
other mediators
3.
4. GPCR
• G protein-coupled receptors also known as seven-(pass)-
transmembrane domain receptors, 7TM
receptors, heptahelical receptors, serpentine receptor,
and G protein-linked receptors (GPLR)
• constitute a large protein family of receptors that
detect molecules outside the cell and activate internal signal
trasduction pathways and, ultimately, cellular responses
There are two principal signal transduction pathways
involving the G protein-coupled receptors:
the cAMP signal pathway and
the phosphatidylinositol signal pathway
5. GPCR RECEPTOR STRUCTURE
• GPCRs are integral membrane proteins that possess
seven membrane-spanning domains
or transmembrane helices.
• The extracellular parts of the receptor can
be glycosylated. These extracellular loops also
contain two highly conserved cysteine residues that
form disulfide bonds to stabilize the receptor
structure.
•
6. G PROTEIN
• Guanine nucleotide binding proteins.
• family of proteins that act as molecular switches
inside cells, and are involved in transmitting signals
from a variety of stimuli outside a cell to its interior.
• Their activity is regulated by factors that control
their ability to bind to and hydrolyze guanosine
triphosphate (GTP) to guanosine diphosphate (GDP).
• When they are bound to GTP, they are 'on', and,
when they are bound to GDP, they are 'off'.
7.
8. cAMP pathway
• Receptor bind with signal molecules
• G-protein linked to receptor , and its α subunit
upon activation could stimulate the activity of an
enzyme or other intracellular metabolism
• Adenylyl cyclase is a 12-transmembrane
glycoprotein that catalyzes ATP to form cAMP with
the help of cofactor Mg2+ or Mn2+.
• The cAMP produced is a second messenger in
cellular metabolism and is an allosteric activator of
protein kinase A.
9. • It can also regulate specific gene expression,
cellular secretion, and membrane permeability.
• The protein enzyme contains two catalytic subunits
and two regulatory subunits.
• When cAMP binds to the regulatory subunits, their
conformation is altered, causing the dissociation of
the regulatory subunits, which activates protein
kinase A.
• These signals then can be terminated by cAMP
phosphodiesterase, which is an enzyme that
degrades cAMP to 5'-AMP and inactivates protein
kinase A.
10.
11.
12.
13.
14.
15.
16.
17.
18. Phosphatidylinositol signal pathway
• The extracellular signal molecule binds with the G-
protein receptor (Gq) and activates phospholipase C.
• The lipase hydrolyzes phosphatidylinositol 4,5-
bisphosphate (PIP2) into two second
messengers: inositol 1,4,5-trisphosphate
(IP3) and diacylglycerol (DAG).
• IP3 binds with the IP3 receptor in the membrane of
the smooth endoplasmic reticulum and
mitochondria to open Ca2+ channels.
•
19. • DAG helps activate protein kinase C (PKC), which
phosphorylates many other proteins, changing their
catalytic activities, leading to cellular responses.
• Ca2+ with DAG in activating PKC and can activate
the CaM kinase pathway.
• The kinase then phosphorylates target enzymes,
regulating their activities.
• The two signal pathways are connected together by
Ca2+-CaM, which is also a regulatory subunit of
adenylyl cyclase and phosphodiesterase in the
cAMP signal pathway.