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GENE TRANSFER
TECHNIQUES
MANDAWI TRIPATHI
INTRODUCTION
• Gene transfer is to transfer a gene from one DNA molecule to
another DNA molecule.
• The directed desirable gene transfer from one organism to
another and the subsequent stable integration & expression of
foreign gene into the genome is referred as genetic
transformation.
• Transient transformation occur when DNA is not integreted
into host genome
• Stable transformation occur when DNA is integrated into host
genome and is inherited in subsequent generations.
• The transferred gene is known as transgene and the organism
that develop after a successful gene transfer is known as
transgenic.
METHODS OF GENE TRANSFER
DNA transfer by natural methods
• 1. Conjugation
• 2. Bacterial transformation
• 3. Retroviral transduction
• 4. Agrobacterium mediated transfer
DNA TRANSFER BY ARTIFICIAL METHODS
• Physical methods
• 1. Microinjection
• 2. Biolistics transformation
• Chemical methods
• 1. DNA transfer by calcium phosphate method
• 2. Liposome mediated transfer
• Electrical methods
• 1. Electroporation
CONJUGATION
• Requires the presence of a special plasmid called the F
plasmid.
• Bacteria that have a F plasmid are referred to as as F+ or
male. Those that do not have an F plasmid are F- of female.
• The F plasmid consists of 25 genes that mostly code for
production of sex pilli.
• A conjugation event occurs when the male cell extends his
sex pilli and one attaches to the female.
• This attached pilus is a temporary cytoplasmic bridge
through which a replicating F plasmid is transferred from
the male to the female.
• When transfer is complete, the result is two male cells.
• When the F+ plasmid is integrated within the bacterial
chromosome, the cell is called an Hfr cell (high frequency
of recombination cell).
TRANSFORMATION
• transformation is the direct uptake of exogenous DNA from its
surroundings and taken up through the cell membrane .
• Transformation occurs naturally in some species of bacteria,
but it can also be effected by artificial treatment in other
species.
• Cells that have undergone this treatment are said to be
competent.
• Any DNA that is not integrated into he chromosome will be
degraded.
TRANSDUCTION
• Gene transfer from a donor to a recipient by way of a
bacteriophag..
• If the lysogenic cycle is adopted, the phage chromosome is
integrated (by covalent bonds) into the bacterial chromosome,
where it can remain dormant for thousands of generation
• The lytic cycle leads to the production of new phage particles
which are released by lysis of the host.
AGROBACTERIUM MEDIATED
TRANSFER
• Agrobacterium tumefaciens is a soil borne gram negative
bacterium.
• It invades many dicot plants when they are injured at the soil
level and causes crown gall disease.
• The ability to cause crown gall disease is associated with the
presence of the Ti (tumour inducing) plasmid within the
bacterial cell.
• Ti plasmid can be used to transport new genes into plant cells.
THE Ti-PLASMIDS
• A remarkable feature of the Ti plasmid is that, after infection, part of
the molecule is integrated into the plant chromosomal DNA .
• This segment, called the T-DNA, is between 15 and 30 kb in size,
depending on the strain.
• T-DNA contains eight or so genes that are expressed in the plant cell
and are responsible for the cancerous properties of the transformed
cells.
• These genes also direct synthesis of unusual compounds, called
opines, that the bacteria use as nutrient.
• The vir (virulence) region of the Ti- plasmid contains the
genes required for the T-DNA transfer process.
• The genes in this region encode the DNA processing
enzymes required for excision, transfer and integration of the
T-DNA segment.
• The T-DNA region of any Ti
plasmid is defined by the
presence of the right and the
left border sequences.
• These border sequences are 24
bp imperfect repeats.
• Any DNA between the borders
will be transferred in to the
genome of the plant.
Ti-Plasmid mediated
transfer of gene into a plant
• The Ti-Plasmid has an innate ability to transmit bacterial DNA
into plant cells.
• The gene of a donor organism can be introduced into the Ti
plasmid at the T-DNA region
• This plasmid now becomes a recombinant plasmid.
• By Agrobacterium infection, the donor genes can transferred
from the recombinant Ti- Plasmid and integrated into the
genotype of the host plant.
VECTORLESS or DIRECT GENE
TRANSFER
• Physical methods
• 1. Microinjection
• 2. Biolistics transformation
• Chemical methods
• 1. DNA transfer by calcium phosphate method
• 2. Liposome mediated transfer
• 3. Transfer of DNA by use of polyethene glycol
• Electrical methods
• 1. Electroporation
Electroporation
• Electroporation uses electrical pulse to produce transient
pores in the plasma membrane thereby allowing DNA into
the cells.
• These pores are known as electropores.
•
• The cells are placed in a solution containing DNA and
subjected to electrical pulse to cause holes in the
membrane.
• The foreign DNA fragments enter through holes into the
cytoplasm and then to nucleus.
Advantages of Electroporation
• 1. Method is fast.
• 2. Less costly.
• 3. Applied for a number of cell
types.
• 4. Simultaneously a large number
of cell can be treated.
• 5. High percentage of stable
transformants can be produced
Microinjection
The microinjection is the process of transferring the desirable
DNA into the living cell ,through the use of glass
micropipette .
Glass micropipette is usually of 0.5 to 5 micrometer,
easily penetrates into the cell membrane and nuclear
envelope.
The desired gene is then injected into the sub cellular
compartment and needle is removed
Limitations of microinjection
• Costly.
• Skilled personal required.
• More useful for animal cells.
Biolistics or Microprojectiles
• Biolistics or particle bombardment is a physical method that
uses accelerated microprojectiles to deliver DNA or other
molecules into intact tissues and cells.
• The gene gun is a device that literally fires DNA into target
cells .
• The DNA to be transformed into the cells is coated onto
microscopic beads made of either gold or tungsten.
• The coated beads are then attached to the end of the plastic
bullet and loaded into the firing chamber of the gene gun.
• An explosive force fires the bullet with DNA coated beads
towards the target cells that lie just beyond the end of the
barrel.
• Some of the beads pass through the cell wall into the
cytoplasm of the target cells
Liposome mediated gene transfer
• Liposomes are spheres of lipids which can be used to transport
molecules into the cells.
• These are artificial vesicles that can act as delivery agents for
exogenous materials including transgenes.
• Promote transport after fusing with the cell membrane.
• Cationic lipids are those having a positive charge are used for
the transfer of nucleic acid.
Advantages
• 1. Simplicity.
• 2. Long term stability.
• 3. Low toxicity.
• 4. Protection of
nucleic acid from
degradation
Calcium phosphate mediated DNA transfer
• The process of transfection involves the admixture of isolated
DNA (10-100ug) with solution of calcium chloride and
potassium phosphate so precipitate of calcium phosphate to be
formed.
• Cells are then incubated with precipitated DNA either in
solution or in tissue culture dish.
• A fraction of cells will take up the calcium phosphate DNA
precipitate by endocytosis.
• Transfection efficiencies is quite low.
Polyethylene glycol mediated transfection
• This method is utilized for protoplast only.
• Polyethylene glycol stimulates endocytosis and therefore DNA
uptake occurs.
• Protoplasts are kept in the solution containing polyethylene
glycol (PEG).
• After transfer of DNA to the protoplast in presence of PEG
and other chemicals, PEG is allowed to get removed
SCREENING OF TRANSGENE
• The presence of transgene or gene of interest is detected by
several methods:
• A selectable marker gene
• Southern blot techniques
• Northern bolt technique
• Western blot technique
APPLICATION
• Clinical gene transfer applications
• Vaccine Development
• Production of transgenic animals
• Treatment of Cancer, AIDS
• Gene Discovery
• Gene Therapy
• Enhancing the resistance of plants
• GMO
REFERENCES
• Sukharev, S.I., Klenchin, V.A., Serov, S.M., Chernomordik, L.V. & Chizmadzhev, Y.A. (1992). Electroporation
• and electrophoretic DNA transfer into cells. The effect of DNA interaction with electropores. Biophys. J., 63 (5):
• 1320-1327.
• [2] Chu, G., Hayakawa, H. & Berg, P. (1987). Electroporation for the efficient transfection of mammalian cells with
• DNA. Nucleic Acids Res., 15 (3): 1311-1326.
• [3] Akamatsu, W., Okano, H.J., Osumi, N., Inoue, T., Nakamura, S., Sakakibara, S.I., Miura, M., Matsuo, N.,
Darnell,
• R.B. & Okano, H. (1999). Mammalian ELAV-like neuronal RNAbinding proteins HuB and HuC promote
• neuronal development in both the central and the peripheral nervous systems. Proc. Natl. Acad. Sci. USA., 96
(17):
• 9885-9890.
• [4] Osumi, N. & Inoue, T. (2001). Gene transfer into cultured mammalian embryos by electroporation. Methods., 24
• Antoni Ivorra, Boris Rubinsky. "Gels with predetermined conductivity used in electroporation of tissue USPTO
Application #: 20080214986 - Class: 604 21 (USPTO)".
• Jump upJump up^ Sugar, I.P.; Neumann, E. (1984). "Stochastic model for electric field-induced membrane pores
electroporation". Biophysical Chemistry 19 (3): 211–25. doi:10.1016/0301-4622(84)87003-9. PMID 6722274.
• ^ Alberts, Bruce; et al. (2002). Molecular Biology of the Cell. New York: Garland Science. p. G:35. ISBN 978-0-81
• Jogdand, S.N. (2006). Gene Biotechnology. Himalaya Publishing House. Mumbai, India. 2nd ed., p 237-249.
• Chen, C.A. & Okayama, H. (1988). Calcium phosphate-mediated gene transfer: a highly efficient trasfection
system for stably transforming cells with plasmid DNA. Biotechniques.,
• Watwe, R.M. & Bellare, J.R. (1995). Manufacture of liposomes a review. Curr. Sci. India., . Nicolau, C., Legrand,
A. & Grosse, E. (1987). Liposomes as carriers for in vivo gene transfer and expression. Method Enzymol., 149:
157-176.
• lies, M.A. & Balaban, A.T. (2001). Recent developments in cationic lipid-mediated gene delivery and gene therapy.
Expert Opin. Ther. Patents.,
• Reece, R.J. (2004). Analysis of Genes and Genomes. John Wiley and Sons Ltd.
• Johnston, S.A. & Tang, D.C. (1994). Gene gun transfection of animal cells and genetic immunization. Methods Cell
Biol., 43
• Klein, T.M., Arentzen, R., Lewis, P.A. & Fitzpatrickmcelligott, S. (1992). Transformation of microbes, plants and animals by
particle bombardment. Biotechnology
• King, R. (2004). Gene delivery to mammalian cells by microinjection. Methods Mol. Biol.,
• David B. Burr; Matthew R. Allen (11 June 2013). Basic and Applied Bone Biology. Academic. p. 157. ISBN 978-0-12-391459-0.
Retrieved 15 July 2013.
• ^ Juan Carlos Lacal; Rosario Perona; James Feramisco (11 June 1999). Microinjection. Springer. p. 9. ISBN 978-3-7643-6019-1.
Retrieved 13 July 2013.
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genetransfer2-131115113127-phpapp01.pdf

  • 2. INTRODUCTION • Gene transfer is to transfer a gene from one DNA molecule to another DNA molecule. • The directed desirable gene transfer from one organism to another and the subsequent stable integration & expression of foreign gene into the genome is referred as genetic transformation. • Transient transformation occur when DNA is not integreted into host genome
  • 3. • Stable transformation occur when DNA is integrated into host genome and is inherited in subsequent generations. • The transferred gene is known as transgene and the organism that develop after a successful gene transfer is known as transgenic.
  • 4. METHODS OF GENE TRANSFER DNA transfer by natural methods • 1. Conjugation • 2. Bacterial transformation • 3. Retroviral transduction • 4. Agrobacterium mediated transfer
  • 5. DNA TRANSFER BY ARTIFICIAL METHODS • Physical methods • 1. Microinjection • 2. Biolistics transformation • Chemical methods • 1. DNA transfer by calcium phosphate method • 2. Liposome mediated transfer • Electrical methods • 1. Electroporation
  • 6. CONJUGATION • Requires the presence of a special plasmid called the F plasmid. • Bacteria that have a F plasmid are referred to as as F+ or male. Those that do not have an F plasmid are F- of female. • The F plasmid consists of 25 genes that mostly code for production of sex pilli. • A conjugation event occurs when the male cell extends his sex pilli and one attaches to the female.
  • 7. • This attached pilus is a temporary cytoplasmic bridge through which a replicating F plasmid is transferred from the male to the female. • When transfer is complete, the result is two male cells. • When the F+ plasmid is integrated within the bacterial chromosome, the cell is called an Hfr cell (high frequency of recombination cell).
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  • 9. TRANSFORMATION • transformation is the direct uptake of exogenous DNA from its surroundings and taken up through the cell membrane . • Transformation occurs naturally in some species of bacteria, but it can also be effected by artificial treatment in other species. • Cells that have undergone this treatment are said to be competent. • Any DNA that is not integrated into he chromosome will be degraded.
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  • 11. TRANSDUCTION • Gene transfer from a donor to a recipient by way of a bacteriophag.. • If the lysogenic cycle is adopted, the phage chromosome is integrated (by covalent bonds) into the bacterial chromosome, where it can remain dormant for thousands of generation • The lytic cycle leads to the production of new phage particles which are released by lysis of the host.
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  • 13. AGROBACTERIUM MEDIATED TRANSFER • Agrobacterium tumefaciens is a soil borne gram negative bacterium. • It invades many dicot plants when they are injured at the soil level and causes crown gall disease. • The ability to cause crown gall disease is associated with the presence of the Ti (tumour inducing) plasmid within the bacterial cell. • Ti plasmid can be used to transport new genes into plant cells.
  • 14. THE Ti-PLASMIDS • A remarkable feature of the Ti plasmid is that, after infection, part of the molecule is integrated into the plant chromosomal DNA . • This segment, called the T-DNA, is between 15 and 30 kb in size, depending on the strain. • T-DNA contains eight or so genes that are expressed in the plant cell and are responsible for the cancerous properties of the transformed cells. • These genes also direct synthesis of unusual compounds, called opines, that the bacteria use as nutrient.
  • 15. • The vir (virulence) region of the Ti- plasmid contains the genes required for the T-DNA transfer process. • The genes in this region encode the DNA processing enzymes required for excision, transfer and integration of the T-DNA segment.
  • 16. • The T-DNA region of any Ti plasmid is defined by the presence of the right and the left border sequences. • These border sequences are 24 bp imperfect repeats. • Any DNA between the borders will be transferred in to the genome of the plant.
  • 17. Ti-Plasmid mediated transfer of gene into a plant • The Ti-Plasmid has an innate ability to transmit bacterial DNA into plant cells. • The gene of a donor organism can be introduced into the Ti plasmid at the T-DNA region • This plasmid now becomes a recombinant plasmid. • By Agrobacterium infection, the donor genes can transferred from the recombinant Ti- Plasmid and integrated into the genotype of the host plant.
  • 18. VECTORLESS or DIRECT GENE TRANSFER • Physical methods • 1. Microinjection • 2. Biolistics transformation • Chemical methods • 1. DNA transfer by calcium phosphate method • 2. Liposome mediated transfer • 3. Transfer of DNA by use of polyethene glycol • Electrical methods • 1. Electroporation
  • 19. Electroporation • Electroporation uses electrical pulse to produce transient pores in the plasma membrane thereby allowing DNA into the cells. • These pores are known as electropores. •
  • 20. • The cells are placed in a solution containing DNA and subjected to electrical pulse to cause holes in the membrane. • The foreign DNA fragments enter through holes into the cytoplasm and then to nucleus.
  • 21. Advantages of Electroporation • 1. Method is fast. • 2. Less costly. • 3. Applied for a number of cell types. • 4. Simultaneously a large number of cell can be treated. • 5. High percentage of stable transformants can be produced
  • 22. Microinjection The microinjection is the process of transferring the desirable DNA into the living cell ,through the use of glass micropipette . Glass micropipette is usually of 0.5 to 5 micrometer, easily penetrates into the cell membrane and nuclear envelope. The desired gene is then injected into the sub cellular compartment and needle is removed
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  • 24. Limitations of microinjection • Costly. • Skilled personal required. • More useful for animal cells.
  • 25. Biolistics or Microprojectiles • Biolistics or particle bombardment is a physical method that uses accelerated microprojectiles to deliver DNA or other molecules into intact tissues and cells. • The gene gun is a device that literally fires DNA into target cells . • The DNA to be transformed into the cells is coated onto microscopic beads made of either gold or tungsten.
  • 26. • The coated beads are then attached to the end of the plastic bullet and loaded into the firing chamber of the gene gun. • An explosive force fires the bullet with DNA coated beads towards the target cells that lie just beyond the end of the barrel. • Some of the beads pass through the cell wall into the cytoplasm of the target cells
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  • 28. Liposome mediated gene transfer • Liposomes are spheres of lipids which can be used to transport molecules into the cells. • These are artificial vesicles that can act as delivery agents for exogenous materials including transgenes. • Promote transport after fusing with the cell membrane. • Cationic lipids are those having a positive charge are used for the transfer of nucleic acid.
  • 29. Advantages • 1. Simplicity. • 2. Long term stability. • 3. Low toxicity. • 4. Protection of nucleic acid from degradation
  • 30. Calcium phosphate mediated DNA transfer • The process of transfection involves the admixture of isolated DNA (10-100ug) with solution of calcium chloride and potassium phosphate so precipitate of calcium phosphate to be formed. • Cells are then incubated with precipitated DNA either in solution or in tissue culture dish. • A fraction of cells will take up the calcium phosphate DNA precipitate by endocytosis.
  • 32. Polyethylene glycol mediated transfection • This method is utilized for protoplast only. • Polyethylene glycol stimulates endocytosis and therefore DNA uptake occurs. • Protoplasts are kept in the solution containing polyethylene glycol (PEG). • After transfer of DNA to the protoplast in presence of PEG and other chemicals, PEG is allowed to get removed
  • 33. SCREENING OF TRANSGENE • The presence of transgene or gene of interest is detected by several methods: • A selectable marker gene • Southern blot techniques • Northern bolt technique • Western blot technique
  • 34. APPLICATION • Clinical gene transfer applications • Vaccine Development • Production of transgenic animals • Treatment of Cancer, AIDS • Gene Discovery • Gene Therapy • Enhancing the resistance of plants • GMO
  • 35. REFERENCES • Sukharev, S.I., Klenchin, V.A., Serov, S.M., Chernomordik, L.V. & Chizmadzhev, Y.A. (1992). Electroporation • and electrophoretic DNA transfer into cells. The effect of DNA interaction with electropores. Biophys. J., 63 (5): • 1320-1327. • [2] Chu, G., Hayakawa, H. & Berg, P. (1987). Electroporation for the efficient transfection of mammalian cells with • DNA. Nucleic Acids Res., 15 (3): 1311-1326. • [3] Akamatsu, W., Okano, H.J., Osumi, N., Inoue, T., Nakamura, S., Sakakibara, S.I., Miura, M., Matsuo, N., Darnell, • R.B. & Okano, H. (1999). Mammalian ELAV-like neuronal RNAbinding proteins HuB and HuC promote • neuronal development in both the central and the peripheral nervous systems. Proc. Natl. Acad. Sci. USA., 96 (17): • 9885-9890. • [4] Osumi, N. & Inoue, T. (2001). Gene transfer into cultured mammalian embryos by electroporation. Methods., 24 • Antoni Ivorra, Boris Rubinsky. "Gels with predetermined conductivity used in electroporation of tissue USPTO Application #: 20080214986 - Class: 604 21 (USPTO)". • Jump upJump up^ Sugar, I.P.; Neumann, E. (1984). "Stochastic model for electric field-induced membrane pores electroporation". Biophysical Chemistry 19 (3): 211–25. doi:10.1016/0301-4622(84)87003-9. PMID 6722274. • ^ Alberts, Bruce; et al. (2002). Molecular Biology of the Cell. New York: Garland Science. p. G:35. ISBN 978-0-81
  • 36. • Jogdand, S.N. (2006). Gene Biotechnology. Himalaya Publishing House. Mumbai, India. 2nd ed., p 237-249. • Chen, C.A. & Okayama, H. (1988). Calcium phosphate-mediated gene transfer: a highly efficient trasfection system for stably transforming cells with plasmid DNA. Biotechniques., • Watwe, R.M. & Bellare, J.R. (1995). Manufacture of liposomes a review. Curr. Sci. India., . Nicolau, C., Legrand, A. & Grosse, E. (1987). Liposomes as carriers for in vivo gene transfer and expression. Method Enzymol., 149: 157-176. • lies, M.A. & Balaban, A.T. (2001). Recent developments in cationic lipid-mediated gene delivery and gene therapy. Expert Opin. Ther. Patents., • Reece, R.J. (2004). Analysis of Genes and Genomes. John Wiley and Sons Ltd. • Johnston, S.A. & Tang, D.C. (1994). Gene gun transfection of animal cells and genetic immunization. Methods Cell Biol., 43 • Klein, T.M., Arentzen, R., Lewis, P.A. & Fitzpatrickmcelligott, S. (1992). Transformation of microbes, plants and animals by particle bombardment. Biotechnology • King, R. (2004). Gene delivery to mammalian cells by microinjection. Methods Mol. Biol., • David B. Burr; Matthew R. Allen (11 June 2013). Basic and Applied Bone Biology. Academic. p. 157. ISBN 978-0-12-391459-0. Retrieved 15 July 2013. • ^ Juan Carlos Lacal; Rosario Perona; James Feramisco (11 June 1999). Microinjection. Springer. p. 9. ISBN 978-3-7643-6019-1. Retrieved 13 July 2013.