This document discusses a mathematical bivariate generalized Poisson model for analyzing cortisol awakening response (CAR) in patients with multiple sclerosis (MS). It presents the probability generating function (PGF) and moment generating function (MGF) for the bivariate generalized Poisson distribution. CAR is higher in relapsing-remitting MS patients compared to secondary-progressive MS patients and healthy controls. Treated RRMS patients show a higher CAR than untreated RRMS patients. RRMS patients with increased disability scores over time also have a higher CAR. Graphs of the PGF and MGF based on data from RRMS, SPMS and healthy patients support these findings. The model provides a way to analyze circadian cortisol patterns and