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Fluorescence in situ
Hybridization
Fluorescence in situ
Hybridization (FISH)
 FISH - a process which vividly
paints chromosomes or portions
of chromosomes with
fluorescent molecules
 Opening picture - Human M-
phase spread using DAPI stain
Fluorescence in situ
Hybridization (FISH)
 Identifies chromosomal
abnormalities
 Aids in gene mapping,
toxicological studies, analysis of
chromosome structural
aberrations, and ploidy
determination
Fluorescence in situ
Hybridization (FISH)
 Used to identify the presence
and location of a region of DNA
or RNA within morphologically
preserved chromosome
preparations, fixed cells or
tissue sections
Fluorescence in situ
Hybridization (FISH)
 This means you can view a
segment or entire chromosome
with your own eyes
 Was often used during M phase
but is now used on I phase
chromosomes as well
Fluorescence in situ
Hybridization (FISH)
 Advantage: less labor-intensive
method for confirming the
presence of a DNA segment
within an entire genome than
other conventional methods like
Southern blotting
FISH Procedure
 Denature the chromosomes
 Denature the probe
 Hybridization
 Fluorescence staining
 Examine slides or store in the
dark
FISH Procedure
FISH Uses
 Detection of high
concentrations of base pairs
 Eg: Mouse metaphase
preparation stained with DAPI
(a non-specific DNA binding dye
with high affinity for A-T bonds)
FISH Uses
FISH Uses
 Centromere regions stained
brighter - means they are rich in
A-T bonds
 Also used in germ cell or
prenatal diagnosis of conditions
such as aneuploidies
FISH and Telomeres
 Telomeric probes define the
terminal boundaries of
chromosomes (5’ and 3’ ends)
 Used in research of
chromosomal rearrangements
and deletions related to cell
aging or other genetic
abnormalities
FISH and Telomeres
 Special telomeric probes
specific to individual
chromosomes have been
designed
 Probe is based on the TTAGGG
repeat present on all human
telomeres
FISH and Telomeres
FISH and Telomeres
 Application in cytogenetics -
can detect submicroscopic
deletions and cryptic
translocations of genes
associated with unexplained
mental retardation and
miscarriages
FISH and Telomeres - Medical
from TelVysion DNA website
 “A translocation between
chromosomes 12 and 21 with
breakpoints at bands 12p13
(TEL)[telomere] and 21q22
(AML1) occurs in at least 25
percent of childhood B-cell
acute lymphocytic leukemia”
FISH and Telomeres - Medical
 The “LS1 TEL/AML1 ES Dual-
Color Translocation Probe” is
designed to detect the TEL and
AML1 gene fusion
 This fusion is undetectable by
standard cytogenetics, but can
be seen with FISH
FISH - Medical
 FISH can be used in the study
of transgenic animals (eg: Polly)
 Selective markers show if the
human DNA was inserted
successfully and pinpoint where
the human DNA is
 Transgenic Mouse
FISH - Medical

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fish.ppt

  • 2. Fluorescence in situ Hybridization (FISH)  FISH - a process which vividly paints chromosomes or portions of chromosomes with fluorescent molecules  Opening picture - Human M- phase spread using DAPI stain
  • 3. Fluorescence in situ Hybridization (FISH)  Identifies chromosomal abnormalities  Aids in gene mapping, toxicological studies, analysis of chromosome structural aberrations, and ploidy determination
  • 4. Fluorescence in situ Hybridization (FISH)  Used to identify the presence and location of a region of DNA or RNA within morphologically preserved chromosome preparations, fixed cells or tissue sections
  • 5. Fluorescence in situ Hybridization (FISH)  This means you can view a segment or entire chromosome with your own eyes  Was often used during M phase but is now used on I phase chromosomes as well
  • 6. Fluorescence in situ Hybridization (FISH)  Advantage: less labor-intensive method for confirming the presence of a DNA segment within an entire genome than other conventional methods like Southern blotting
  • 7. FISH Procedure  Denature the chromosomes  Denature the probe  Hybridization  Fluorescence staining  Examine slides or store in the dark
  • 9. FISH Uses  Detection of high concentrations of base pairs  Eg: Mouse metaphase preparation stained with DAPI (a non-specific DNA binding dye with high affinity for A-T bonds)
  • 11. FISH Uses  Centromere regions stained brighter - means they are rich in A-T bonds  Also used in germ cell or prenatal diagnosis of conditions such as aneuploidies
  • 12. FISH and Telomeres  Telomeric probes define the terminal boundaries of chromosomes (5’ and 3’ ends)  Used in research of chromosomal rearrangements and deletions related to cell aging or other genetic abnormalities
  • 13. FISH and Telomeres  Special telomeric probes specific to individual chromosomes have been designed  Probe is based on the TTAGGG repeat present on all human telomeres
  • 15. FISH and Telomeres  Application in cytogenetics - can detect submicroscopic deletions and cryptic translocations of genes associated with unexplained mental retardation and miscarriages
  • 16. FISH and Telomeres - Medical from TelVysion DNA website  “A translocation between chromosomes 12 and 21 with breakpoints at bands 12p13 (TEL)[telomere] and 21q22 (AML1) occurs in at least 25 percent of childhood B-cell acute lymphocytic leukemia”
  • 17. FISH and Telomeres - Medical  The “LS1 TEL/AML1 ES Dual- Color Translocation Probe” is designed to detect the TEL and AML1 gene fusion  This fusion is undetectable by standard cytogenetics, but can be seen with FISH
  • 18. FISH - Medical  FISH can be used in the study of transgenic animals (eg: Polly)  Selective markers show if the human DNA was inserted successfully and pinpoint where the human DNA is  Transgenic Mouse