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M.Prasad Naidu
MSc Medical Biochemistry, Ph.D,.
Based on the type of reaction enzymes can be
classified into SIX MAJORTYPES
Classification of enzymes
1. Oxidoreductases- lactate dehydrogenase
2. Transferases- glucokinase
3. Hydrolases- chymotrypsin, G6Pase
4. Lyases- fumarase
5. Isomerases- phosphoglucoisomerase
6. Ligases- Acyl CoA synthetase
Transfer of electrons (Hydride ions or H atoms)
1) Dehydrogenases
2) Oxidases
3) Oxygenases
There are several subclasses
OXIDOREDUCTASE
alcohol
aldehyde
Oxidation of Ethanol by Alcohol Dehydrogenase
Remove electrons and/or hydrogen atoms
Dehydrogenases
Catalyze incorporation of oxygen
into a substrate
Hydroxylation of Progesterone by a
Monooxygenase
Oxygenases
Transfer functional groups in group transfer reactions
1) Amino transferases
2) Kinases
3) Glycosyl transferases
Types of transferases
TRANSFERASES
Transfer an amino group from one amino acid to a new keto acid
AminoTransferases (orTransaminase)
Catalyze transfer of the
phosphoryl group
Kinases
Transfer an activated
glycosyl residue to a
glycogen primer. This is a
key enzyme in glycogen
synthesis
GlycosylTransferases
Hydrolysis reactions
The generalized reaction involves hydrolytic cleavage of C-O, C-N,
O-P, and C-S bonds
HYDROLASES
R1 C NH
O
R2 R1 C O
-
O
NH3 R2+ H2O +
Cleavage of a peptide bond by peptidases
Peptidase
Addition or removal of elements of water, ammonia, or carbon
dioxide
LYASES
Removal of an element of CO2 from and -keto acids or amino
acids
R C C
O
O
-
R C H
O
CO2+ H
+
+
O
Decarboxylases
The substrates bicarbonate and pyruvate are ligated to form a four-
carbon (C4) oxaloacetate
Pyruvate Decarboxylase
Fumarase reversibly converts fumarate to malate. It removes H2O in a
dehydration reaction converting malate to fumarate
Dehydratases
Transfer of groups within molecules to yield
isomeric form
Isomerases
Isomerases that catalyze inversion at asymmetric carbon atoms
Epimerases
Involved in synthetic reactions where two molecules are joined at the
expense of a high-energy phosphate bond of ATP
LIGASES
Biotin
Acetyl CoA + CO2 MalonylCoA
ATP ADP + Pi
Enzyme is Acetyl CoA carboxylase or AcetylCoA-CO2
ligase (systematic) code number EC.6.4.1.2ese
enzymes link two substrates together, usually.
 km indicates the affinity of enzyme to the
substrate
 Smaller the km larger the affinity
 Larger the km smaller the affinity
Substrate conc affects reaction velocity (rate)
 As substrate concentration is increased, Initial velocity
vi, increases until it reaches maximum Vmax.
 further increase in substrate concentration does not
increase velocity the enzyme is said to be saturated.
 Note that the shape of the graphic curve relating to
catalytic activity and substrate concentration is hyperbolic
Michaelis – menten equation illustrates in mathematical
terms the relationship between initial reaction velocity , vi, and
substrate concentration.
Km = Michaelis constant
Vmax = maximal velocity
Vi = initial velocity
[s] = substrate concentration
Vmax [s]
Vi =
Km + [s]
Km value or Michaelis – menten constant is defined as
substrate concentration (expressed in moles / liter)
to produce half maximal velocity in an enzyme catalysed
reaction at a particular enzyme concentration.
 It indicates that 50% of enzyme molecules are bound
with the substrate molecules.
 It’s a characteristic of an enzyme or signature of an
enzyme.
 Lower the Km value Higher the affinity of the enzyme for
substrate.
 Higher the Km value, the affinity of the enzyme for the
substrate is low.
Hexokinase
Glucose Glucose-6-Phosphate
ATP ADP
Glucokinase
HK Km value 10-2 mmol / L
GK Km value 20 mmol / L
1.Hepatic diseases
1.Alanine amino transferase (ALT)
Marked increase in parenchymal liver disease
2. Alkaline phsophatase (ALP)
Marked increase in obstructive liver disease
3.Nucleotide phsophatase (NTP)
Elevated in liver dysfunction with cholestasis
4. Gamma glutamyl transferase (GGT)
Increase in obstructive and alcoholic liver disease
II.Myocardial Infarction:
1.Cratine Kinase (CK – MB)
First enzyme to rise following infarction,CK-MB isoenzyme
is specific.
2.Aspartate amino transferase (AST)
Rises after the rise in CK and returns to normal in 4-5 days
3.Lactate dehydrogenase (LDH)
Last enzyme to rise. LDH-1 becomes more than 2 (Flipped
pattern)
Enzyme pattern in Myocardial infraction
AST
Normal pattern of LDH in serum
Flipped pattern of LDH in MI
III.Muscle disease
1.Creatine Kinase (CK-MM)
Marked increase in muscle disease. CK-MM fraction is elevated
2. Aspartate amino transferase (AST)
Shows an increase in different types of muscle diseas; not specific
3. Aldolase
Earliest enzyme to rise. But not specific
IV. Bone diseases
1.Alkanine phosphatase (ALP)
Marked elevationin osteoblastic bone activity as in rickets. Heat labile bone
isoenzyme is elevated. Also in Paget’s disease.
V.Prostate cancer
1.Prostate specific antigen (PSA)
Marker for prostate cancer. Mild increase in benign prostate enlargement.
2. Acid phosphatase (ACP)
Marker for prostate cancer . Metastatic bone disease especially from a primary from
prostate.
Six major types of enzymes and their classification

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Six major types of enzymes and their classification

  • 1. M.Prasad Naidu MSc Medical Biochemistry, Ph.D,.
  • 2. Based on the type of reaction enzymes can be classified into SIX MAJORTYPES Classification of enzymes 1. Oxidoreductases- lactate dehydrogenase 2. Transferases- glucokinase 3. Hydrolases- chymotrypsin, G6Pase 4. Lyases- fumarase 5. Isomerases- phosphoglucoisomerase 6. Ligases- Acyl CoA synthetase
  • 3. Transfer of electrons (Hydride ions or H atoms) 1) Dehydrogenases 2) Oxidases 3) Oxygenases There are several subclasses OXIDOREDUCTASE
  • 4. alcohol aldehyde Oxidation of Ethanol by Alcohol Dehydrogenase Remove electrons and/or hydrogen atoms Dehydrogenases
  • 5. Catalyze incorporation of oxygen into a substrate Hydroxylation of Progesterone by a Monooxygenase Oxygenases
  • 6. Transfer functional groups in group transfer reactions 1) Amino transferases 2) Kinases 3) Glycosyl transferases Types of transferases TRANSFERASES
  • 7. Transfer an amino group from one amino acid to a new keto acid AminoTransferases (orTransaminase)
  • 8. Catalyze transfer of the phosphoryl group Kinases
  • 9. Transfer an activated glycosyl residue to a glycogen primer. This is a key enzyme in glycogen synthesis GlycosylTransferases
  • 10. Hydrolysis reactions The generalized reaction involves hydrolytic cleavage of C-O, C-N, O-P, and C-S bonds HYDROLASES
  • 11. R1 C NH O R2 R1 C O - O NH3 R2+ H2O + Cleavage of a peptide bond by peptidases Peptidase
  • 12. Addition or removal of elements of water, ammonia, or carbon dioxide LYASES
  • 13. Removal of an element of CO2 from and -keto acids or amino acids R C C O O - R C H O CO2+ H + + O Decarboxylases
  • 14. The substrates bicarbonate and pyruvate are ligated to form a four- carbon (C4) oxaloacetate Pyruvate Decarboxylase
  • 15. Fumarase reversibly converts fumarate to malate. It removes H2O in a dehydration reaction converting malate to fumarate Dehydratases
  • 16. Transfer of groups within molecules to yield isomeric form Isomerases
  • 17. Isomerases that catalyze inversion at asymmetric carbon atoms Epimerases
  • 18. Involved in synthetic reactions where two molecules are joined at the expense of a high-energy phosphate bond of ATP LIGASES
  • 19.
  • 20. Biotin Acetyl CoA + CO2 MalonylCoA ATP ADP + Pi Enzyme is Acetyl CoA carboxylase or AcetylCoA-CO2 ligase (systematic) code number EC.6.4.1.2ese enzymes link two substrates together, usually.
  • 21.  km indicates the affinity of enzyme to the substrate  Smaller the km larger the affinity  Larger the km smaller the affinity
  • 22. Substrate conc affects reaction velocity (rate)  As substrate concentration is increased, Initial velocity vi, increases until it reaches maximum Vmax.  further increase in substrate concentration does not increase velocity the enzyme is said to be saturated.  Note that the shape of the graphic curve relating to catalytic activity and substrate concentration is hyperbolic
  • 23.
  • 24. Michaelis – menten equation illustrates in mathematical terms the relationship between initial reaction velocity , vi, and substrate concentration. Km = Michaelis constant Vmax = maximal velocity Vi = initial velocity [s] = substrate concentration Vmax [s] Vi = Km + [s]
  • 25. Km value or Michaelis – menten constant is defined as substrate concentration (expressed in moles / liter) to produce half maximal velocity in an enzyme catalysed reaction at a particular enzyme concentration.  It indicates that 50% of enzyme molecules are bound with the substrate molecules.  It’s a characteristic of an enzyme or signature of an enzyme.  Lower the Km value Higher the affinity of the enzyme for substrate.  Higher the Km value, the affinity of the enzyme for the substrate is low.
  • 26. Hexokinase Glucose Glucose-6-Phosphate ATP ADP Glucokinase HK Km value 10-2 mmol / L GK Km value 20 mmol / L
  • 27. 1.Hepatic diseases 1.Alanine amino transferase (ALT) Marked increase in parenchymal liver disease 2. Alkaline phsophatase (ALP) Marked increase in obstructive liver disease 3.Nucleotide phsophatase (NTP) Elevated in liver dysfunction with cholestasis 4. Gamma glutamyl transferase (GGT) Increase in obstructive and alcoholic liver disease
  • 28. II.Myocardial Infarction: 1.Cratine Kinase (CK – MB) First enzyme to rise following infarction,CK-MB isoenzyme is specific. 2.Aspartate amino transferase (AST) Rises after the rise in CK and returns to normal in 4-5 days 3.Lactate dehydrogenase (LDH) Last enzyme to rise. LDH-1 becomes more than 2 (Flipped pattern)
  • 29. Enzyme pattern in Myocardial infraction AST
  • 30. Normal pattern of LDH in serum
  • 31. Flipped pattern of LDH in MI
  • 32. III.Muscle disease 1.Creatine Kinase (CK-MM) Marked increase in muscle disease. CK-MM fraction is elevated 2. Aspartate amino transferase (AST) Shows an increase in different types of muscle diseas; not specific 3. Aldolase Earliest enzyme to rise. But not specific
  • 33. IV. Bone diseases 1.Alkanine phosphatase (ALP) Marked elevationin osteoblastic bone activity as in rickets. Heat labile bone isoenzyme is elevated. Also in Paget’s disease. V.Prostate cancer 1.Prostate specific antigen (PSA) Marker for prostate cancer. Mild increase in benign prostate enlargement. 2. Acid phosphatase (ACP) Marker for prostate cancer . Metastatic bone disease especially from a primary from prostate.