(i) The document discusses elimination reactions, specifically the E2 and E1 mechanisms.
(ii) The E2 reaction is bimolecular and results in retention of stereochemistry. The E1 reaction is unimolecular and results in loss of stereochemistry.
(iii) Key factors that influence whether an elimination reaction proceeds by E2 or E1 include temperature, solvent, and the stereoelectronic effects of the starting material. Higher temperatures and polar protic solvents favor E1, while less sterically hindered substrates favor E2.
Procedure for test of aldehydes and ketones:
Dissolve the given organic compound in ethanol.
To this solution, add an alcoholic solution of 2,4-dinitrophenyl hydrazine.
Shake the mixture well.
If there is a formation of yellow to orange precipitate then the given compound is an aldehyde or ketone.
aliphatic cyclic compounds, alicyclic compounds, cyclic compounds, cycloalkanes, nomenclature, preparations and reaction, reactions of cycloalkanes, addition reactions of cyclopropane and cyclobutane, Baeyer's strain theory, angle strain, their heat of combustion and stabilities, Sachse and Mohr prediction, Pitzer's strain theory, torsional strain, cyclopropane, cyclobutane, cyclopentane, cyclohexane, chair form and boat form of cyclohexane, axial and equatorial hydrogen atoms,
Dynamic Stereochemistry and What role does conformation plays on stereochemistry is being exemplified in this presentation. Useful for the Undergraduate and Postgraduates students of Pharmacy, Pharmaceutical Chemistry and Chemical Sciences
Slide 1: Title Slide
Extrachromosomal Inheritance
Slide 2: Introduction to Extrachromosomal Inheritance
Definition: Extrachromosomal inheritance refers to the transmission of genetic material that is not found within the nucleus.
Key Components: Involves genes located in mitochondria, chloroplasts, and plasmids.
Slide 3: Mitochondrial Inheritance
Mitochondria: Organelles responsible for energy production.
Mitochondrial DNA (mtDNA): Circular DNA molecule found in mitochondria.
Inheritance Pattern: Maternally inherited, meaning it is passed from mothers to all their offspring.
Diseases: Examples include Leber’s hereditary optic neuropathy (LHON) and mitochondrial myopathy.
Slide 4: Chloroplast Inheritance
Chloroplasts: Organelles responsible for photosynthesis in plants.
Chloroplast DNA (cpDNA): Circular DNA molecule found in chloroplasts.
Inheritance Pattern: Often maternally inherited in most plants, but can vary in some species.
Examples: Variegation in plants, where leaf color patterns are determined by chloroplast DNA.
Slide 5: Plasmid Inheritance
Plasmids: Small, circular DNA molecules found in bacteria and some eukaryotes.
Features: Can carry antibiotic resistance genes and can be transferred between cells through processes like conjugation.
Significance: Important in biotechnology for gene cloning and genetic engineering.
Slide 6: Mechanisms of Extrachromosomal Inheritance
Non-Mendelian Patterns: Do not follow Mendel’s laws of inheritance.
Cytoplasmic Segregation: During cell division, organelles like mitochondria and chloroplasts are randomly distributed to daughter cells.
Heteroplasmy: Presence of more than one type of organellar genome within a cell, leading to variation in expression.
Slide 7: Examples of Extrachromosomal Inheritance
Four O’clock Plant (Mirabilis jalapa): Shows variegated leaves due to different cpDNA in leaf cells.
Petite Mutants in Yeast: Result from mutations in mitochondrial DNA affecting respiration.
Slide 8: Importance of Extrachromosomal Inheritance
Evolution: Provides insight into the evolution of eukaryotic cells.
Medicine: Understanding mitochondrial inheritance helps in diagnosing and treating mitochondrial diseases.
Agriculture: Chloroplast inheritance can be used in plant breeding and genetic modification.
Slide 9: Recent Research and Advances
Gene Editing: Techniques like CRISPR-Cas9 are being used to edit mitochondrial and chloroplast DNA.
Therapies: Development of mitochondrial replacement therapy (MRT) for preventing mitochondrial diseases.
Slide 10: Conclusion
Summary: Extrachromosomal inheritance involves the transmission of genetic material outside the nucleus and plays a crucial role in genetics, medicine, and biotechnology.
Future Directions: Continued research and technological advancements hold promise for new treatments and applications.
Slide 11: Questions and Discussion
Invite Audience: Open the floor for any questions or further discussion on the topic.
What is greenhouse gasses and how many gasses are there to affect the Earth.moosaasad1975
What are greenhouse gasses how they affect the earth and its environment what is the future of the environment and earth how the weather and the climate effects.
(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...Scintica Instrumentation
Intravital microscopy (IVM) is a powerful tool utilized to study cellular behavior over time and space in vivo. Much of our understanding of cell biology has been accomplished using various in vitro and ex vivo methods; however, these studies do not necessarily reflect the natural dynamics of biological processes. Unlike traditional cell culture or fixed tissue imaging, IVM allows for the ultra-fast high-resolution imaging of cellular processes over time and space and were studied in its natural environment. Real-time visualization of biological processes in the context of an intact organism helps maintain physiological relevance and provide insights into the progression of disease, response to treatments or developmental processes.
In this webinar we give an overview of advanced applications of the IVM system in preclinical research. IVIM technology is a provider of all-in-one intravital microscopy systems and solutions optimized for in vivo imaging of live animal models at sub-micron resolution. The system’s unique features and user-friendly software enables researchers to probe fast dynamic biological processes such as immune cell tracking, cell-cell interaction as well as vascularization and tumor metastasis with exceptional detail. This webinar will also give an overview of IVM being utilized in drug development, offering a view into the intricate interaction between drugs/nanoparticles and tissues in vivo and allows for the evaluation of therapeutic intervention in a variety of tissues and organs. This interdisciplinary collaboration continues to drive the advancements of novel therapeutic strategies.
Procedure for test of aldehydes and ketones:
Dissolve the given organic compound in ethanol.
To this solution, add an alcoholic solution of 2,4-dinitrophenyl hydrazine.
Shake the mixture well.
If there is a formation of yellow to orange precipitate then the given compound is an aldehyde or ketone.
aliphatic cyclic compounds, alicyclic compounds, cyclic compounds, cycloalkanes, nomenclature, preparations and reaction, reactions of cycloalkanes, addition reactions of cyclopropane and cyclobutane, Baeyer's strain theory, angle strain, their heat of combustion and stabilities, Sachse and Mohr prediction, Pitzer's strain theory, torsional strain, cyclopropane, cyclobutane, cyclopentane, cyclohexane, chair form and boat form of cyclohexane, axial and equatorial hydrogen atoms,
Dynamic Stereochemistry and What role does conformation plays on stereochemistry is being exemplified in this presentation. Useful for the Undergraduate and Postgraduates students of Pharmacy, Pharmaceutical Chemistry and Chemical Sciences
Slide 1: Title Slide
Extrachromosomal Inheritance
Slide 2: Introduction to Extrachromosomal Inheritance
Definition: Extrachromosomal inheritance refers to the transmission of genetic material that is not found within the nucleus.
Key Components: Involves genes located in mitochondria, chloroplasts, and plasmids.
Slide 3: Mitochondrial Inheritance
Mitochondria: Organelles responsible for energy production.
Mitochondrial DNA (mtDNA): Circular DNA molecule found in mitochondria.
Inheritance Pattern: Maternally inherited, meaning it is passed from mothers to all their offspring.
Diseases: Examples include Leber’s hereditary optic neuropathy (LHON) and mitochondrial myopathy.
Slide 4: Chloroplast Inheritance
Chloroplasts: Organelles responsible for photosynthesis in plants.
Chloroplast DNA (cpDNA): Circular DNA molecule found in chloroplasts.
Inheritance Pattern: Often maternally inherited in most plants, but can vary in some species.
Examples: Variegation in plants, where leaf color patterns are determined by chloroplast DNA.
Slide 5: Plasmid Inheritance
Plasmids: Small, circular DNA molecules found in bacteria and some eukaryotes.
Features: Can carry antibiotic resistance genes and can be transferred between cells through processes like conjugation.
Significance: Important in biotechnology for gene cloning and genetic engineering.
Slide 6: Mechanisms of Extrachromosomal Inheritance
Non-Mendelian Patterns: Do not follow Mendel’s laws of inheritance.
Cytoplasmic Segregation: During cell division, organelles like mitochondria and chloroplasts are randomly distributed to daughter cells.
Heteroplasmy: Presence of more than one type of organellar genome within a cell, leading to variation in expression.
Slide 7: Examples of Extrachromosomal Inheritance
Four O’clock Plant (Mirabilis jalapa): Shows variegated leaves due to different cpDNA in leaf cells.
Petite Mutants in Yeast: Result from mutations in mitochondrial DNA affecting respiration.
Slide 8: Importance of Extrachromosomal Inheritance
Evolution: Provides insight into the evolution of eukaryotic cells.
Medicine: Understanding mitochondrial inheritance helps in diagnosing and treating mitochondrial diseases.
Agriculture: Chloroplast inheritance can be used in plant breeding and genetic modification.
Slide 9: Recent Research and Advances
Gene Editing: Techniques like CRISPR-Cas9 are being used to edit mitochondrial and chloroplast DNA.
Therapies: Development of mitochondrial replacement therapy (MRT) for preventing mitochondrial diseases.
Slide 10: Conclusion
Summary: Extrachromosomal inheritance involves the transmission of genetic material outside the nucleus and plays a crucial role in genetics, medicine, and biotechnology.
Future Directions: Continued research and technological advancements hold promise for new treatments and applications.
Slide 11: Questions and Discussion
Invite Audience: Open the floor for any questions or further discussion on the topic.
What is greenhouse gasses and how many gasses are there to affect the Earth.moosaasad1975
What are greenhouse gasses how they affect the earth and its environment what is the future of the environment and earth how the weather and the climate effects.
(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...Scintica Instrumentation
Intravital microscopy (IVM) is a powerful tool utilized to study cellular behavior over time and space in vivo. Much of our understanding of cell biology has been accomplished using various in vitro and ex vivo methods; however, these studies do not necessarily reflect the natural dynamics of biological processes. Unlike traditional cell culture or fixed tissue imaging, IVM allows for the ultra-fast high-resolution imaging of cellular processes over time and space and were studied in its natural environment. Real-time visualization of biological processes in the context of an intact organism helps maintain physiological relevance and provide insights into the progression of disease, response to treatments or developmental processes.
In this webinar we give an overview of advanced applications of the IVM system in preclinical research. IVIM technology is a provider of all-in-one intravital microscopy systems and solutions optimized for in vivo imaging of live animal models at sub-micron resolution. The system’s unique features and user-friendly software enables researchers to probe fast dynamic biological processes such as immune cell tracking, cell-cell interaction as well as vascularization and tumor metastasis with exceptional detail. This webinar will also give an overview of IVM being utilized in drug development, offering a view into the intricate interaction between drugs/nanoparticles and tissues in vivo and allows for the evaluation of therapeutic intervention in a variety of tissues and organs. This interdisciplinary collaboration continues to drive the advancements of novel therapeutic strategies.
Introduction:
RNA interference (RNAi) or Post-Transcriptional Gene Silencing (PTGS) is an important biological process for modulating eukaryotic gene expression.
It is highly conserved process of posttranscriptional gene silencing by which double stranded RNA (dsRNA) causes sequence-specific degradation of mRNA sequences.
dsRNA-induced gene silencing (RNAi) is reported in a wide range of eukaryotes ranging from worms, insects, mammals and plants.
This process mediates resistance to both endogenous parasitic and exogenous pathogenic nucleic acids, and regulates the expression of protein-coding genes.
What are small ncRNAs?
micro RNA (miRNA)
short interfering RNA (siRNA)
Properties of small non-coding RNA:
Involved in silencing mRNA transcripts.
Called “small” because they are usually only about 21-24 nucleotides long.
Synthesized by first cutting up longer precursor sequences (like the 61nt one that Lee discovered).
Silence an mRNA by base pairing with some sequence on the mRNA.
Discovery of siRNA?
The first small RNA:
In 1993 Rosalind Lee (Victor Ambros lab) was studying a non- coding gene in C. elegans, lin-4, that was involved in silencing of another gene, lin-14, at the appropriate time in the
development of the worm C. elegans.
Two small transcripts of lin-4 (22nt and 61nt) were found to be complementary to a sequence in the 3' UTR of lin-14.
Because lin-4 encoded no protein, she deduced that it must be these transcripts that are causing the silencing by RNA-RNA interactions.
Types of RNAi ( non coding RNA)
MiRNA
Length (23-25 nt)
Trans acting
Binds with target MRNA in mismatch
Translation inhibition
Si RNA
Length 21 nt.
Cis acting
Bind with target Mrna in perfect complementary sequence
Piwi-RNA
Length ; 25 to 36 nt.
Expressed in Germ Cells
Regulates trnasposomes activity
MECHANISM OF RNAI:
First the double-stranded RNA teams up with a protein complex named Dicer, which cuts the long RNA into short pieces.
Then another protein complex called RISC (RNA-induced silencing complex) discards one of the two RNA strands.
The RISC-docked, single-stranded RNA then pairs with the homologous mRNA and destroys it.
THE RISC COMPLEX:
RISC is large(>500kD) RNA multi- protein Binding complex which triggers MRNA degradation in response to MRNA
Unwinding of double stranded Si RNA by ATP independent Helicase
Active component of RISC is Ago proteins( ENDONUCLEASE) which cleave target MRNA.
DICER: endonuclease (RNase Family III)
Argonaute: Central Component of the RNA-Induced Silencing Complex (RISC)
One strand of the dsRNA produced by Dicer is retained in the RISC complex in association with Argonaute
ARGONAUTE PROTEIN :
1.PAZ(PIWI/Argonaute/ Zwille)- Recognition of target MRNA
2.PIWI (p-element induced wimpy Testis)- breaks Phosphodiester bond of mRNA.)RNAse H activity.
MiRNA:
The Double-stranded RNAs are naturally produced in eukaryotic cells during development, and they have a key role in regulating gene expression .
This presentation explores a brief idea about the structural and functional attributes of nucleotides, the structure and function of genetic materials along with the impact of UV rays and pH upon them.
Comparing Evolved Extractive Text Summary Scores of Bidirectional Encoder Rep...University of Maribor
Slides from:
11th International Conference on Electrical, Electronics and Computer Engineering (IcETRAN), Niš, 3-6 June 2024
Track: Artificial Intelligence
https://www.etran.rs/2024/en/home-english/
Comparing Evolved Extractive Text Summary Scores of Bidirectional Encoder Rep...
Elimnations.ppt
1. Part 4
Elimination Reactions
Cl
H R2
R1
R3
R4
R2
R1
R4
R3
R2
R1
R4
R3
Loss of
Stereochemistry
R3
R1
R4
R2
Retension
of
Steroechemistry
Rate =k[R-Hal][Nu] Rate =k[R-Hal]
B
2. – Learning Objectives Part 4 –
Elimination Reactions
After completing PART 4 of this course you should have an understanding of, and be able to demonstrate, the following
terms, ideas and methods.
(i) Understand E2 and E1 reaction mechanisms
(ii) Understand how experimental evidence from rate equations and stereochemical outcomes in the product
lead to the proposal of reaction mechanisms
(iii) Understand the experimental factors which favour E2 or E1 reaction mechanisms
(vi) Understand the term antiperiplanar in the context of E2 reaction mechanisms
(v) Understand that in assessing the reaction outcome in an elimination reaction, the stereoelectronic of the
alkylhalide needs to be considered carefully, ie. the constitution and conformation
CHM1C3
– Introduction to Chemical Reactivity of Organic
Compounds–
3. Elimination Reactions
Descriptor Rate Equation Stereochemical
Outcome
E2 rate = k[R-Hal][Nu] Retension
E1 rate = k[R-Hal] Loss of
Stereochemistry
Clearly, two different reaction mechanisms must be in operation.
It is the job of the chemists to fit the experimental data to any proposed
mechanism
C
Cl
C Cl
R4
R3
H
R1
R2
C
C
R4
R3
R1
R2
NuH
B BH
4.
5. The E2 Reaction Mechanism
Cl
H R2
R1
R3
R4
B
Rate = k[R-Hal][B]
Bimolecular
Process
H and Cl must be
antiperiplanar
Transition State –
Energy Maxima
Cl
H R2
R1
R3
R4
B
H
B
R2
R1
R4
R3
Cl
Retension
of
Steroechemistry
Compare to SN2
7. The E1 Reaction Mechanism
Cl
H R2
R1
R3
R4
Unimolecular
Process
Rate = k[R-Hal]
B
Rotation about
C-C Bond
H
R2
R1 R3
R4
Cl
H
R3
R1 R2
R4
Cl
Reactive Intermediate – Energy Minima
R2
R1
R4
R3
R3
R1
R4
R2
Loss of
Stereochemistry
Compare to SN1
12. Constitutionally Different Eliminations
Br
Minor Alkene
Product
Major Alkene
Product
Br
H 2 Equivalent
Hydrogen atoms
Br
H
6 Equivalent
Hydrogen atoms
Statistically favoured!
Base
Constitutional
Isomers
14. Cl
Ph D
H
H
Ph
B
Steric clash of the
two phenyl groups
raises the energy of
the transition state,
as the two carbon
centres become sp2
hybridised
Cl
Ph
H
D
H
Ph
B
High Energy
Transition State
Low Energy
Transition State
15. Cl
CH3
H3C CH3
NaOEt
EtOH
Rate = k[R-Cl][NaOEt] CH3
H3C CH3
CH3
H3C CH3
25% 75%
Cl
H H
Cl
H H
EtO EtO
Cyclohexane Rings – E2
Cl
H H
Two C-H bonds are
antiperiplanar to the
C-Cl bond
16. Cyclohexane Rings – E1
No C-H bonds are
antiperiplanar to the
C-Cl bond
Cl
H H
EtO
H H
H
H H
EtO
H
Cl
CH3
H3C CH3
CH3
H3C CH3
CH3
H3C CH3
H2O
EtOH
Rate = k[R-Cl]
32% 68%
Polar Solvent
Supports Carbocation
Formation
Cl
H H
17. – Summary Sheet Part 4 –
Elimination Reactions
The difference in electronegativity between the carbon and chlorine atoms in the C-Cl sigma () bond result in a polarised bond,
such that there is a partial positive charge (+) on the -carbon atom and a slight negative charge (-) on the halogen atom, which
in turn is transmitted to the -carbon atom and the protons associated with it. Thus, the hydrogen atoms on the -carbon atom are
slightly acidic. Thus, if we react haloalkanes with bases (chemical species which react with acids), the base will abstract the
proton atom, leading to carbon-carbon double bond being formed with cleavage of the C-Cl bond.
The mechanism of this -elimination (or 1,2 elimination) can take two limiting forms described as Bimolecular Elimination (E2)
and Unimolecular Elimination (E1).
The E2 mechanism fits with a rate equation which is dependent on both the base and haloalkane, and that the product retains
the stereochemical information about the C-C bond. This retension of stereochemical integrity requires an antiperiplanar
relationship of the eliminated atoms.
In contrast, The E1 mechanism fits with a rate equation which is dependent on only the haloalkane, and that the product
undergoes a loss of the stereochemical information about the C-C bond. Thus, with appropriately substituted haloalkane a
pair of diastereomeric alkenes are formed, as result of rotation around the C-C bond upon formation of the carbocationic
intermediate.
CHM1C3
– Introduction to Chemical Reactivity of Organic
Compounds–
18.
19. Exercise 1: Substitution/Elimination Reactions
Rationalise the experimental results that when 1 is reacted with NaOEt in EtOH, two alkenes are formed,
whereas 2 under the same conditions affords an inverted substitution product.
H
H
Cl
1
NaOEt
EtOH
H
H
H
H
H
H
Cl
2
H
H
OEt
NaOEt
EtOH
20. Answer 1: Substitution/Elimination Reactions
Rationalise the experimental results that when 1 is reacted with NaOEt in EtOH, two alkenes are formed,
whereas 2 under the same conditions affords an inverted substitution product.
H
H
Cl
1
NaOEt
EtOH
H
H
H
H
H
H
Cl
2
H
H
OEt
NaOEt
EtOH
As 2 undergoes an inversion of stereochemistry one must assume SN2 mechanism.
As 1 is subject to the same reaction conditions as 2 one must assume that elimination of HCl does
not involve the formation of a carbocation, and thus E2 mechanism must operate.
Cl
H
H
H
EtO
H
H
H
Cl
H
H
H
EtO
H
H
Cl
H
H
EtO
OEt
H
H
Antiperiplanar Conformational Relationships
E2 E2
SN2
21. Cl Cl
NaOEt
EtOH
MODERATE
Temperature
rate = k[R-Cl][NaOEt]
NaOEt
EtOH
HIGH
Temperature
rate = k[R-Cl][NaOEt]
Exercise 2: Elimination Reactions
Rationalise the following
Cl Cl
NaOEt
EtOH
MODERATE
Temperature
rate = k[R-Cl][NaOEt]
NaOEt
EtOH
HIGH
Temperature
rate = k[R-Cl][NaOEt]
22. Cl Cl
NaOEt
EtOH
MODERATE
Temperature
rate = k[R-Cl][NaOEt]
NaOEt
EtOH
HIGH
Temperature
rate = k[R-Cl][NaOEt]
Answer2: Elimination Reactions
Rationalise the following
Cl Cl
NaOEt
EtOH
MODERATE
Temperature
rate = k[R-Cl][NaOEt]
NaOEt
EtOH
HIGH
Temperature
rate = k[R-Cl][NaOEt]
H
Cl
Cl
H
Cl
H
H
Cl
H
Cl
H
Cl
H
H
EtO
EtO
TS2
TS1
OEt
OEt
The energy to attain this transition
state TS2 geometry is much higher
that TS1, because the largest
substituent (t-Bu) and the Cl are
both in the axial positions, which
leads to large steric clashes. Thus,
more energy, i.e. higher reaction
temperatures, are required to attain
TS2 relative to TS1.