This document discusses the interplay between Mycobacterium tuberculosis (Mtb) and the host immune environment, particularly in the context of HIV/TB co-infection. It presents several key findings:
1. Mtb can detect and respond to environmental cues within the macrophage such as oxidative stress, nutrient limitation, and changes in pH and chloride concentration. This allows Mtb to sense its intracellular location and immune status.
2. Reporter strains of Mtb show an accelerated transcriptional response to stresses like nitric oxide in vaccinated mice, indicating the immune response is developing faster.
3. Drugs like isoniazid have greater activity against intracellular Mtb in naive mice, suggesting the bacteria replicate more in this
This study investigated the population structure and insecticide resistance in Culex pipiens mosquitoes from two areas in Northern Greece. Molecular diagnostic assays found that the pipiens biotype was more common than the molestus biotype in both areas. Higher frequencies of the resistant Kdr mutation were found in Evros compared to Thessaloniki. No mosquitoes had the F290V or G119S mutations that confer resistance to organophosphates and carbamates, though the G119S heterozygous genotype was more common in Thessaloniki. The results provide information that can help guide mosquito control and insecticide use strategies.
Gene for gene system in plant fungus interactionVinod Upadhyay
1. Plant-fungus interactions can be characterized by gene-for-gene systems where a plant resistance gene corresponds to a fungal avirulence gene. Vertical or race-specific resistance follows this pattern and is not durable due to high selection pressure.
2. R proteins in plants recognize specific pathogen effectors or avirulence proteins through direct or indirect models. Direct models involve recognition of effectors by R protein receptors. Indirect models involve the effector targeting or modifying a host protein that is then recognized by the R protein.
3. Understanding gene-for-gene systems and how plants recognize pathogens at the molecular level can enable new strategies for disease control through deployment of resistance genes and exploitation of avirulence
This study investigated the role of the luxS gene in Borrelia burgdorferi, the bacterium that causes Lyme disease. The researchers found that:
1) B. burgdorferi expresses the luxS gene at comparable levels both in vitro and when infecting rats, but did not detect autoinducer-2 activity, which is produced by the luxS gene product.
2) A luxS mutant strain of B. burgdorferi was still able to infect mice at the same level as the wild type strain when inoculated via needle, indicating luxS is not required for infectivity.
3) These findings challenge the idea that B. burgdorferi uses a
This document discusses non-host resistance in plants. It begins with an introduction and outline. It then discusses the components of non-host resistance, including preformed defenses, inducible defenses, defense signaling, and broad-spectrum resistance genes. It provides examples of different types of non-host resistance and applications in agriculture. The document also summarizes several studies examining the role of specific genes and signaling molecules in non-host resistance through experiments in model plants like Arabidopsis.
This document summarizes the selection and characterization of recombinant clones from a Mycobacterium leprae expression library screened with sera from household contacts of leprosy patients. Twelve recombinant clones were selected that reacted with antibodies in the contact sera. These antigens recognized by contact sera differed from those recognized by monoclonal antibodies and were not identical to known M. leprae antigens. Two groups of antigens were identified: one recognized by all contact sera, and one recognized by only some contact sera. These antigens may be relevant to early immune responses during M. leprae infection.
This document summarizes research on the molecular mechanisms underlying inflammation caused by enteroaggregative Escherichia coli (EAEC) in the intestinal epithelium. EAEC causes chronic inflammation through the expression of aggregative adherence fimbriae (AAF) on its surface. In vitro studies showed that AAF expression triggers the basolateral release of the chemokine IL-8 from intestinal epithelial cells and the transmigration of polymorphonuclear neutrophils (PMNs). Further experiments identified that AAF expression from the prototype EAEC strains 042 and JM221, as well as the AAF/I and AAF/III fimbriae encoded on plasmids, are required for inducing PMN migration. Studies
1) The document describes a study that used RNA sequencing to analyze changes in gene expression in black gram pods in response to oviposition by bruchid beetles. 2) The study found 630 differentially expressed genes in a moderately resistant cultivar and 168 in a susceptible cultivar in response to oviposition. 3) Pathway analysis revealed that the major transcriptomic changes involved induction of defense response genes, transcription factors, secondary metabolites, enzyme inhibitors, and signaling pathways like salicylic acid, which may contribute to resistance against bruchid beetles.
This study investigated the population structure and insecticide resistance in Culex pipiens mosquitoes from two areas in Northern Greece. Molecular diagnostic assays found that the pipiens biotype was more common than the molestus biotype in both areas. Higher frequencies of the resistant Kdr mutation were found in Evros compared to Thessaloniki. No mosquitoes had the F290V or G119S mutations that confer resistance to organophosphates and carbamates, though the G119S heterozygous genotype was more common in Thessaloniki. The results provide information that can help guide mosquito control and insecticide use strategies.
Gene for gene system in plant fungus interactionVinod Upadhyay
1. Plant-fungus interactions can be characterized by gene-for-gene systems where a plant resistance gene corresponds to a fungal avirulence gene. Vertical or race-specific resistance follows this pattern and is not durable due to high selection pressure.
2. R proteins in plants recognize specific pathogen effectors or avirulence proteins through direct or indirect models. Direct models involve recognition of effectors by R protein receptors. Indirect models involve the effector targeting or modifying a host protein that is then recognized by the R protein.
3. Understanding gene-for-gene systems and how plants recognize pathogens at the molecular level can enable new strategies for disease control through deployment of resistance genes and exploitation of avirulence
This study investigated the role of the luxS gene in Borrelia burgdorferi, the bacterium that causes Lyme disease. The researchers found that:
1) B. burgdorferi expresses the luxS gene at comparable levels both in vitro and when infecting rats, but did not detect autoinducer-2 activity, which is produced by the luxS gene product.
2) A luxS mutant strain of B. burgdorferi was still able to infect mice at the same level as the wild type strain when inoculated via needle, indicating luxS is not required for infectivity.
3) These findings challenge the idea that B. burgdorferi uses a
This document discusses non-host resistance in plants. It begins with an introduction and outline. It then discusses the components of non-host resistance, including preformed defenses, inducible defenses, defense signaling, and broad-spectrum resistance genes. It provides examples of different types of non-host resistance and applications in agriculture. The document also summarizes several studies examining the role of specific genes and signaling molecules in non-host resistance through experiments in model plants like Arabidopsis.
This document summarizes the selection and characterization of recombinant clones from a Mycobacterium leprae expression library screened with sera from household contacts of leprosy patients. Twelve recombinant clones were selected that reacted with antibodies in the contact sera. These antigens recognized by contact sera differed from those recognized by monoclonal antibodies and were not identical to known M. leprae antigens. Two groups of antigens were identified: one recognized by all contact sera, and one recognized by only some contact sera. These antigens may be relevant to early immune responses during M. leprae infection.
This document summarizes research on the molecular mechanisms underlying inflammation caused by enteroaggregative Escherichia coli (EAEC) in the intestinal epithelium. EAEC causes chronic inflammation through the expression of aggregative adherence fimbriae (AAF) on its surface. In vitro studies showed that AAF expression triggers the basolateral release of the chemokine IL-8 from intestinal epithelial cells and the transmigration of polymorphonuclear neutrophils (PMNs). Further experiments identified that AAF expression from the prototype EAEC strains 042 and JM221, as well as the AAF/I and AAF/III fimbriae encoded on plasmids, are required for inducing PMN migration. Studies
1) The document describes a study that used RNA sequencing to analyze changes in gene expression in black gram pods in response to oviposition by bruchid beetles. 2) The study found 630 differentially expressed genes in a moderately resistant cultivar and 168 in a susceptible cultivar in response to oviposition. 3) Pathway analysis revealed that the major transcriptomic changes involved induction of defense response genes, transcription factors, secondary metabolites, enzyme inhibitors, and signaling pathways like salicylic acid, which may contribute to resistance against bruchid beetles.
Tobacco ring e3 ligase nt rfp1 mediates romanceRomanceManna
This journal club presentation summarizes a research article that investigated the interaction between the Tobacco RING E3 Ligase NtRFP1 and the betasatellite-encoded βC1 protein of the Geminivirus Tomato yellow leaf curl China virus. The presentation identifies that NtRFP1 interacts with βC1 and functions as an E3 ubiquitin ligase that mediates the ubiquitination and proteasomal degradation of βC1. This degradation of the βC1 pathogenicity determinant by NtRFP1 affects βC1-induced symptoms. In conclusion, the study finds that the βC1 protein is targeted for degradation by the host plant's ubiquitin-proteasome system through
The IOSR Journal of Pharmacy (IOSRPHR) is an open access online & offline peer reviewed international journal, which publishes innovative research papers, reviews, mini-reviews, short communications and notes dealing with Pharmaceutical Sciences( Pharmaceutical Technology, Pharmaceutics, Biopharmaceutics, Pharmacokinetics, Pharmaceutical/Medicinal Chemistry, Computational Chemistry and Molecular Drug Design, Pharmacognosy & Phytochemistry, Pharmacology, Pharmaceutical Analysis, Pharmacy Practice, Clinical and Hospital Pharmacy, Cell Biology, Genomics and Proteomics, Pharmacogenomics, Bioinformatics and Biotechnology of Pharmaceutical Interest........more details on Aim & Scope).
All manuscripts are subject to rapid peer review. Those of high quality (not previously published and not under consideration for publication in another journal) will be published without delay.
This study aimed to detect Mycoplasma gallisepticum (MG) strains in chicken flocks in Egypt with respiratory disease. Nasal swabs from 49 flocks were tested by semi-nested PCR and restriction fragment length polymorphism (RFLP) of the pvpA gene. MG was detected in 37 flocks (75.5% incidence). RFLP analysis identified genetic similarity between some field isolates and the F vaccine strain. Experimental infection of chickens found that field isolates and the F strain were transmitted between infected and contact birds based on PCR testing, with some contact birds developing antibodies. This highlights the need for improved diagnostics and control of MG variant strains.
The document discusses genetically modified (GM) crops and methods for detecting them. It begins with an introduction to GM crops, noting that they are plants modified using genetic engineering to introduce new traits, and that global GM crop acreage has increased significantly in recent decades. It then provides details on three main analytical approaches for detecting GM crops: detection to determine if a product is GM or not, identification of the specific GM crop or trait present, and quantification of GM content. Several DNA-based, protein-based, and trait-based methods are described, including polymerase chain reaction (PCR), enzyme-linked immunosorbent assay (ELISA), and lateral flow tests. The document compares the different methods and concludes with a discussion of the
This document analyzes genetic variation at the Pfs48/45 gene and microsatellite loci in 255 Plasmodium falciparum isolates from 5 populations. It finds:
1) Alleles and haplotypes of 5 SNPs in the Pfs48/45 gene varied extremely between populations, much more so than alleles at 11 neutral microsatellite loci.
2) Measurements of between-population allele frequency variation (FST) were 4-7 times higher for Pfs48/45 than microsatellites, both within and between continents.
3) The highly skewed Pfs48/45 patterns suggest divergent selection on the protein's amino acid sequence between populations, indicating it may determine game
The document summarizes research on Pseudomonas aeruginosa biofilm formation in response to DNA damage. It finds that biofilm stimulation by the DNA-damaging agent hydroxyurea is dependent on the SOS response protein RecA. DNA and protein release in response to hydroxyurea is also controlled by RecA and the regulator Arr. These released macromolecules contribute to biofilm establishment, and their deficiency explains the reduced biofilm formation in recA mutants. The study suggests biofilms may serve as a protective environment during DNA damage.
Phytopathogen induced changes to plant methylomesroshni mohan
This document summarizes a seminar presentation on phytopathogen-induced changes to plant methylomes. It discusses various methods for profiling genome-wide DNA methylation in plants and provides examples of plant methylome changes induced by different pathogens, including bacteria, fungi, viruses, cyst nematodes, and rhizobium. It also describes a case study that analyzed differential DNA methylation and gene expression changes in Arabidopsis roots infected with the cyst nematode Heterodera schachtii using methylation profiling and RNA-sequencing. The study found H. schachtii preferentially induces hypomethylation and targets specific transposable elements and genes for differential methylation.
The document discusses plant disease resistance genes (R-genes) and their importance in crop breeding for disease resistance. It contains the following key points:
1. R-genes encode receptors that recognize pathogen effector proteins and trigger plant immune responses. Most R-genes contain nucleotide binding and leucine-rich repeat domains.
2. Dozens of R-genes have been cloned from various plants using map-based cloning, transposon tagging, or a new method called MutRenSeq that enriches for R-gene sequences.
3. Introducing R-genes from wild crop relatives into domestic crops can provide natural and sustainable resistance to diseases while avoiding pesticide use and potential environmental damage.
COMPUTER AIDED PERSPECTIVE OF SELECTION OF PLANTS AGAINST VIRUSESManik Ghosh
This document discusses using computer-aided docking studies to select plants that may contain compounds effective against viruses. Key points:
1) Docking studies of phytochemicals from 20 plants against protein targets of influenza, dengue, HIV, and chikungunya viruses identified compounds like flavonoids, curcumin, and gallic acid that gave good docking scores and estimated inhibition constants, suggesting potential antiviral activity.
2) This rational in silico approach could help medicinal chemists more efficiently explore natural products for antiviral leads without random plant selection.
3) Some compounds identified in the docking studies like curcumin, quercetin, and gallic acid were
SEROLOGICAL METHODS FOR DETECTION OF PLANT PATHOGENSHARISH J
This document discusses serological methods for detecting plant pathogens. It explains that serodiagnosis involves inducing an immune response in an animal to produce antibodies against a pathogen's antigens. These antibodies can then be used to detect the presence of the pathogen. The document describes several serological testing methods including ring interface tests, microprecipitin tests, double diffusion tests, ELISA, immunosorbent electron microscopy, and immunofluorescent staining. It concludes that serodiagnosis is a sensitive tool for identifying pathogens, detecting infections, and quantifying crop diseases.
Analytical techniques in plant pathology Iram Wains
Agricultural crops are threatened by a wide variety of plant diseases and pests that can damage crops and lower yields. Correct diagnosis of plant diseases is important so that treatments can be tailored to specific pathogens. There are indirect and direct methods used for diagnosis. Indirect methods include environmental reviews and microscopic examination, while direct methods use molecular techniques like antibody-based methods (e.g. ELISA, polyclonal antibodies) and nucleic acid-based methods (e.g. PCR, DNA microarrays) to identify causal agents. DNA microarrays allow screening for multiple pathogens simultaneously. Correct diagnosis is key to minimizing crop losses from diseases and pests.
This study examined the genetic attributes associated with the enhanced sensitivity of an HIV-1 clade C envelope protein (HVTR-PG80v2.eJ7) to autologous broadly neutralizing plasma antibodies from an elite neutralizer. The researchers found that mutations in the V3/C3 region of the envelope protein were associated with its increased sensitivity to neutralization by autologous plasma antibodies. Depletion experiments showed that these mutations altered the envelope conformation to better expose epitopes targeted by both neutralizing and non-neutralizing antibodies in the plasma. Therefore, distinct vulnerabilities associated with antibody evasion could be linked to mutations in the V3/C3 region of the HIV envelope.
The document summarizes systemic acquired resistance (SAR), a type of induced resistance in plants that confers broad-spectrum protection against pathogens. SAR is activated by initial infection, which triggers salicylic acid signaling and pathogenesis-related protein expression throughout the plant. Key regulators include NPR1, which is required for SAR, and salicylic acid, which is involved in long-distance signaling. SAR provides long-lasting resistance against bacterial, fungal, and viral pathogens.
TP receptors augment cellular immune responses and inflammatory tissue injury. Mice lacking the TP receptor, which binds thromboxane A2, show reduced T cell proliferation in response to mitogens and alloantigens. They also show attenuated tissue injury in a cardiac transplant model of inflammation. Thus, thromboxane signaling through the TP receptor enhances immune responses and inflammation, suggesting that specific inhibition of this receptor may reduce inflammation without the side effects of broad COX inhibition by NSAIDs.
(1) Retroviruses like HIV contain RNA as their genetic material instead of DNA. The reverse transcriptase enzyme produces a DNA copy of the viral RNA that integrates into the host cell DNA.
(2) The structure of HIV includes an outer envelope containing glycoproteins like gp120 and gp41, as well as internal core proteins. The glycoproteins help HIV bind to and fuse with target CD4+ cells.
(3) The HIV lifecycle involves binding to and entering target cells, reverse transcription of its RNA into DNA, integration of the DNA into the host genome, production of new viral components, assembly, and budding of new virus particles to infect other cells.
Plant disease resistance genes: current status and future directions.RonikaThakur
Agriculture plays a key role to ensure the food security. But plant diseases hinder the crop production by reducing yield to much extent. To overcome this problem it is crucial to understand plant disease resistance genes which prevent growth of plant pathogens thereby reducing the yield loss.
Dr. Laura Miller - Comparative analysis of signature genes in PRRSV-infected ...John Blue
Comparative analysis of signature genes in PRRSV-infected porcine monocyte-derived dendritic cells at differential activation statuses - Dr. Laura Miller, Virus and Prion Diseases of Livestock Research Unit, National Animal Disease Center, USDA-ARS, from the 2015 North American PRRS Symposium, December 4 - 5, 2015, Chicago, IL, USA.
More presentations at http://www.swinecast.com/2015-north-american-prrs-symposium
Hypersensitivity and its Mechanism summarizes the hypersensitive response (HR) in plants. The HR is a localized cell death response at the site of infection that limits pathogen growth and provides resistance. It involves the recognition of pathogen elicitors by plant receptors, which activates a biochemical reaction cascade and the production of reactive oxygen species and defense compounds. This leads to cell death in infected areas and the acquisition of systemic resistance in other plant tissues through signaling molecules like salicylic acid, jasmonic acid, and ethylene. The HR occurs through specific host-pathogen combinations and results in the depolarization of membranes and disintegration of cellular components at the infection site.
Better ways to predict effectors for functional characterization and resistan...Kelsey Wood
This document discusses better methods for predicting plant pathogen effectors and identifying resistance genes. It finds that the traditional RXLR motif for predicting effectors is limited, especially in downy mildews which exhibit variants like GXLR. A novel WY domain is found to be prevalent in effectors from Phytophthora and downy mildews, identifying more candidates than RXLR alone. Some Lettuce downy mildew WY effectors can suppress plant immunity and elicit cell death. Recognition of specific WY effectors is linked to resistance in plant varieties, allowing rapid mapping of resistance genes. The study concludes the WY domain should be used for effector prediction in these pathogens, as RXLR alone
HCV has evolved multiple mechanisms to evade the immune system and establish chronic infection. It interferes with pattern recognition receptor signaling through cleavage of adaptor proteins by NS3/4A. NS3/4A and NS5A also block RIG-I signaling and JAK/STAT interferon pathways. HCV impairs dendritic cell function and induces T cell exhaustion. The high mutation rate allows escape from neutralizing antibodies and cytotoxic T cells. Combined, these immune evasion strategies enable HCV to overcome host defenses and persist long-term in most infected individuals.
ABSTRACT- Multiple Drug resistance (MDR) tuberculosis timely diagnose is of utmost clinical relevance and needs to be diagnose at initial stages for the proper treatment. The current study was done to detect the several genes for MDR tuberculosis (TB) in clinical isolates by molecular tools. 60 clinical isolates were collected and subjected for AFB smear preparation, Nested PCR (IS6110) for mycobacterium tuberculosis complex detection and MDR TB PCR targeting rpoB, kat G, mab A promoter. 12 came positive for AFB smears, out of which 08 were pulmonary and 04 were extra pulmonary. Nested PCR targeting IS6110 gene was amplified at 123 base pairs with 340 base pairs as IC (internal control) was seen in 25 cases which include 19 pulmonary and 6 extra pulmonary. The Positive TB PCR specimens were subjected for MDRTB PCR Only 06 cases yielded, an amplicon of 315 bp confirming the rpoB gene resistance for resistance for rifampcin drug. In any of the 06 positives none of the other resistance gene other than rpoB was amplified. Targeting multiple genes at once, additional information will be gained from a single test run that otherwise would require several times the reagents and more time to perform. Current study signifies the usage of quick, cost effective, DNA sequences based method for MDR TB detection where disease will be diagnosed earlier and hence treatment would be started at an early stage.
Keywords: Multiple drug resistance, amplicon, Polymerase chain reaction, Nested PCR, Rifampicin.
Tobacco ring e3 ligase nt rfp1 mediates romanceRomanceManna
This journal club presentation summarizes a research article that investigated the interaction between the Tobacco RING E3 Ligase NtRFP1 and the betasatellite-encoded βC1 protein of the Geminivirus Tomato yellow leaf curl China virus. The presentation identifies that NtRFP1 interacts with βC1 and functions as an E3 ubiquitin ligase that mediates the ubiquitination and proteasomal degradation of βC1. This degradation of the βC1 pathogenicity determinant by NtRFP1 affects βC1-induced symptoms. In conclusion, the study finds that the βC1 protein is targeted for degradation by the host plant's ubiquitin-proteasome system through
The IOSR Journal of Pharmacy (IOSRPHR) is an open access online & offline peer reviewed international journal, which publishes innovative research papers, reviews, mini-reviews, short communications and notes dealing with Pharmaceutical Sciences( Pharmaceutical Technology, Pharmaceutics, Biopharmaceutics, Pharmacokinetics, Pharmaceutical/Medicinal Chemistry, Computational Chemistry and Molecular Drug Design, Pharmacognosy & Phytochemistry, Pharmacology, Pharmaceutical Analysis, Pharmacy Practice, Clinical and Hospital Pharmacy, Cell Biology, Genomics and Proteomics, Pharmacogenomics, Bioinformatics and Biotechnology of Pharmaceutical Interest........more details on Aim & Scope).
All manuscripts are subject to rapid peer review. Those of high quality (not previously published and not under consideration for publication in another journal) will be published without delay.
This study aimed to detect Mycoplasma gallisepticum (MG) strains in chicken flocks in Egypt with respiratory disease. Nasal swabs from 49 flocks were tested by semi-nested PCR and restriction fragment length polymorphism (RFLP) of the pvpA gene. MG was detected in 37 flocks (75.5% incidence). RFLP analysis identified genetic similarity between some field isolates and the F vaccine strain. Experimental infection of chickens found that field isolates and the F strain were transmitted between infected and contact birds based on PCR testing, with some contact birds developing antibodies. This highlights the need for improved diagnostics and control of MG variant strains.
The document discusses genetically modified (GM) crops and methods for detecting them. It begins with an introduction to GM crops, noting that they are plants modified using genetic engineering to introduce new traits, and that global GM crop acreage has increased significantly in recent decades. It then provides details on three main analytical approaches for detecting GM crops: detection to determine if a product is GM or not, identification of the specific GM crop or trait present, and quantification of GM content. Several DNA-based, protein-based, and trait-based methods are described, including polymerase chain reaction (PCR), enzyme-linked immunosorbent assay (ELISA), and lateral flow tests. The document compares the different methods and concludes with a discussion of the
This document analyzes genetic variation at the Pfs48/45 gene and microsatellite loci in 255 Plasmodium falciparum isolates from 5 populations. It finds:
1) Alleles and haplotypes of 5 SNPs in the Pfs48/45 gene varied extremely between populations, much more so than alleles at 11 neutral microsatellite loci.
2) Measurements of between-population allele frequency variation (FST) were 4-7 times higher for Pfs48/45 than microsatellites, both within and between continents.
3) The highly skewed Pfs48/45 patterns suggest divergent selection on the protein's amino acid sequence between populations, indicating it may determine game
The document summarizes research on Pseudomonas aeruginosa biofilm formation in response to DNA damage. It finds that biofilm stimulation by the DNA-damaging agent hydroxyurea is dependent on the SOS response protein RecA. DNA and protein release in response to hydroxyurea is also controlled by RecA and the regulator Arr. These released macromolecules contribute to biofilm establishment, and their deficiency explains the reduced biofilm formation in recA mutants. The study suggests biofilms may serve as a protective environment during DNA damage.
Phytopathogen induced changes to plant methylomesroshni mohan
This document summarizes a seminar presentation on phytopathogen-induced changes to plant methylomes. It discusses various methods for profiling genome-wide DNA methylation in plants and provides examples of plant methylome changes induced by different pathogens, including bacteria, fungi, viruses, cyst nematodes, and rhizobium. It also describes a case study that analyzed differential DNA methylation and gene expression changes in Arabidopsis roots infected with the cyst nematode Heterodera schachtii using methylation profiling and RNA-sequencing. The study found H. schachtii preferentially induces hypomethylation and targets specific transposable elements and genes for differential methylation.
The document discusses plant disease resistance genes (R-genes) and their importance in crop breeding for disease resistance. It contains the following key points:
1. R-genes encode receptors that recognize pathogen effector proteins and trigger plant immune responses. Most R-genes contain nucleotide binding and leucine-rich repeat domains.
2. Dozens of R-genes have been cloned from various plants using map-based cloning, transposon tagging, or a new method called MutRenSeq that enriches for R-gene sequences.
3. Introducing R-genes from wild crop relatives into domestic crops can provide natural and sustainable resistance to diseases while avoiding pesticide use and potential environmental damage.
COMPUTER AIDED PERSPECTIVE OF SELECTION OF PLANTS AGAINST VIRUSESManik Ghosh
This document discusses using computer-aided docking studies to select plants that may contain compounds effective against viruses. Key points:
1) Docking studies of phytochemicals from 20 plants against protein targets of influenza, dengue, HIV, and chikungunya viruses identified compounds like flavonoids, curcumin, and gallic acid that gave good docking scores and estimated inhibition constants, suggesting potential antiviral activity.
2) This rational in silico approach could help medicinal chemists more efficiently explore natural products for antiviral leads without random plant selection.
3) Some compounds identified in the docking studies like curcumin, quercetin, and gallic acid were
SEROLOGICAL METHODS FOR DETECTION OF PLANT PATHOGENSHARISH J
This document discusses serological methods for detecting plant pathogens. It explains that serodiagnosis involves inducing an immune response in an animal to produce antibodies against a pathogen's antigens. These antibodies can then be used to detect the presence of the pathogen. The document describes several serological testing methods including ring interface tests, microprecipitin tests, double diffusion tests, ELISA, immunosorbent electron microscopy, and immunofluorescent staining. It concludes that serodiagnosis is a sensitive tool for identifying pathogens, detecting infections, and quantifying crop diseases.
Analytical techniques in plant pathology Iram Wains
Agricultural crops are threatened by a wide variety of plant diseases and pests that can damage crops and lower yields. Correct diagnosis of plant diseases is important so that treatments can be tailored to specific pathogens. There are indirect and direct methods used for diagnosis. Indirect methods include environmental reviews and microscopic examination, while direct methods use molecular techniques like antibody-based methods (e.g. ELISA, polyclonal antibodies) and nucleic acid-based methods (e.g. PCR, DNA microarrays) to identify causal agents. DNA microarrays allow screening for multiple pathogens simultaneously. Correct diagnosis is key to minimizing crop losses from diseases and pests.
This study examined the genetic attributes associated with the enhanced sensitivity of an HIV-1 clade C envelope protein (HVTR-PG80v2.eJ7) to autologous broadly neutralizing plasma antibodies from an elite neutralizer. The researchers found that mutations in the V3/C3 region of the envelope protein were associated with its increased sensitivity to neutralization by autologous plasma antibodies. Depletion experiments showed that these mutations altered the envelope conformation to better expose epitopes targeted by both neutralizing and non-neutralizing antibodies in the plasma. Therefore, distinct vulnerabilities associated with antibody evasion could be linked to mutations in the V3/C3 region of the HIV envelope.
The document summarizes systemic acquired resistance (SAR), a type of induced resistance in plants that confers broad-spectrum protection against pathogens. SAR is activated by initial infection, which triggers salicylic acid signaling and pathogenesis-related protein expression throughout the plant. Key regulators include NPR1, which is required for SAR, and salicylic acid, which is involved in long-distance signaling. SAR provides long-lasting resistance against bacterial, fungal, and viral pathogens.
TP receptors augment cellular immune responses and inflammatory tissue injury. Mice lacking the TP receptor, which binds thromboxane A2, show reduced T cell proliferation in response to mitogens and alloantigens. They also show attenuated tissue injury in a cardiac transplant model of inflammation. Thus, thromboxane signaling through the TP receptor enhances immune responses and inflammation, suggesting that specific inhibition of this receptor may reduce inflammation without the side effects of broad COX inhibition by NSAIDs.
(1) Retroviruses like HIV contain RNA as their genetic material instead of DNA. The reverse transcriptase enzyme produces a DNA copy of the viral RNA that integrates into the host cell DNA.
(2) The structure of HIV includes an outer envelope containing glycoproteins like gp120 and gp41, as well as internal core proteins. The glycoproteins help HIV bind to and fuse with target CD4+ cells.
(3) The HIV lifecycle involves binding to and entering target cells, reverse transcription of its RNA into DNA, integration of the DNA into the host genome, production of new viral components, assembly, and budding of new virus particles to infect other cells.
Plant disease resistance genes: current status and future directions.RonikaThakur
Agriculture plays a key role to ensure the food security. But plant diseases hinder the crop production by reducing yield to much extent. To overcome this problem it is crucial to understand plant disease resistance genes which prevent growth of plant pathogens thereby reducing the yield loss.
Dr. Laura Miller - Comparative analysis of signature genes in PRRSV-infected ...John Blue
Comparative analysis of signature genes in PRRSV-infected porcine monocyte-derived dendritic cells at differential activation statuses - Dr. Laura Miller, Virus and Prion Diseases of Livestock Research Unit, National Animal Disease Center, USDA-ARS, from the 2015 North American PRRS Symposium, December 4 - 5, 2015, Chicago, IL, USA.
More presentations at http://www.swinecast.com/2015-north-american-prrs-symposium
Hypersensitivity and its Mechanism summarizes the hypersensitive response (HR) in plants. The HR is a localized cell death response at the site of infection that limits pathogen growth and provides resistance. It involves the recognition of pathogen elicitors by plant receptors, which activates a biochemical reaction cascade and the production of reactive oxygen species and defense compounds. This leads to cell death in infected areas and the acquisition of systemic resistance in other plant tissues through signaling molecules like salicylic acid, jasmonic acid, and ethylene. The HR occurs through specific host-pathogen combinations and results in the depolarization of membranes and disintegration of cellular components at the infection site.
Better ways to predict effectors for functional characterization and resistan...Kelsey Wood
This document discusses better methods for predicting plant pathogen effectors and identifying resistance genes. It finds that the traditional RXLR motif for predicting effectors is limited, especially in downy mildews which exhibit variants like GXLR. A novel WY domain is found to be prevalent in effectors from Phytophthora and downy mildews, identifying more candidates than RXLR alone. Some Lettuce downy mildew WY effectors can suppress plant immunity and elicit cell death. Recognition of specific WY effectors is linked to resistance in plant varieties, allowing rapid mapping of resistance genes. The study concludes the WY domain should be used for effector prediction in these pathogens, as RXLR alone
HCV has evolved multiple mechanisms to evade the immune system and establish chronic infection. It interferes with pattern recognition receptor signaling through cleavage of adaptor proteins by NS3/4A. NS3/4A and NS5A also block RIG-I signaling and JAK/STAT interferon pathways. HCV impairs dendritic cell function and induces T cell exhaustion. The high mutation rate allows escape from neutralizing antibodies and cytotoxic T cells. Combined, these immune evasion strategies enable HCV to overcome host defenses and persist long-term in most infected individuals.
ABSTRACT- Multiple Drug resistance (MDR) tuberculosis timely diagnose is of utmost clinical relevance and needs to be diagnose at initial stages for the proper treatment. The current study was done to detect the several genes for MDR tuberculosis (TB) in clinical isolates by molecular tools. 60 clinical isolates were collected and subjected for AFB smear preparation, Nested PCR (IS6110) for mycobacterium tuberculosis complex detection and MDR TB PCR targeting rpoB, kat G, mab A promoter. 12 came positive for AFB smears, out of which 08 were pulmonary and 04 were extra pulmonary. Nested PCR targeting IS6110 gene was amplified at 123 base pairs with 340 base pairs as IC (internal control) was seen in 25 cases which include 19 pulmonary and 6 extra pulmonary. The Positive TB PCR specimens were subjected for MDRTB PCR Only 06 cases yielded, an amplicon of 315 bp confirming the rpoB gene resistance for resistance for rifampcin drug. In any of the 06 positives none of the other resistance gene other than rpoB was amplified. Targeting multiple genes at once, additional information will be gained from a single test run that otherwise would require several times the reagents and more time to perform. Current study signifies the usage of quick, cost effective, DNA sequences based method for MDR TB detection where disease will be diagnosed earlier and hence treatment would be started at an early stage.
Keywords: Multiple drug resistance, amplicon, Polymerase chain reaction, Nested PCR, Rifampicin.
Gene Olinger, USAMRIID, Fort Detrick USA, presents at the ProImmune Antigen Characterization and Biomarker Discovery Summit, January 2011.
Protective Immune Reponses to Ebola Virus
This document provides an overview of adenoviral gene therapy, including its applications and limitations. It discusses how adenovirus can be used as a vector for gene delivery due to its ability to efficiently infect cells and produce high titers. However, high doses of adenoviral vectors can cause toxicity and a lethal inflammatory response due to activation of the innate immune system through receptors like TLRs. The adaptive immune system also responds to adenoviral vectors over time.
This document describes the development of reporter Dengue virus (DENV) strains that express green fluorescent protein (GFP) or firefly luciferase (Fluc). The reporter DENV strains were characterized in vitro and in vivo. In vitro, the reporter DENV strains were infectious, sensitive to antiviral compounds and interferons, and allowed screening of a library of interferon-stimulated genes. In vivo bioluminescence imaging in mice revealed that DENV localized predominantly to lymphoid and gut tissues. A mutation (NS4B L52F) was required to confer virulence of the reporter DENV strain in mice. The reporter DENV strains provide a platform for applications such as antiviral discovery and vaccine validation.
A presentation on dengue virus structure, how the virus attacks and spreads in the body, role of heterocyclic drugs in inhibiting the virus and our experiments on the subject.
Photorhabdus bacteria have a mutualistic relationship with nematodes, where they help the nematodes infect and kill insects. These bacteria produce bioluminescence, toxins, and other compounds that help overcome the insects' immune systems. While usually symbiotic with nematodes in insects, some Photorhabdus strains can also infect humans. The bacteria have evolved complex interactions with their hosts and produce many secondary metabolites worth studying for new drug development.
Molnupiravir Medical Presentation - 25th Jan'22.pptxmadhu790094
Molnupiravir is an oral antiviral drug that was originally developed to treat influenza. It works by introducing errors into the viral RNA during replication, which prevents the virus from producing intact infectious particles. Phase 1 and 2 trials found molnupiravir to be well tolerated and effective at reducing viral load and clearing the virus. A phase 3 trial found that molnupiravir reduced the risk of hospitalization or death from COVID-19 by approximately 30% compared to placebo in non-hospitalized high risk patients. Molnupiravir is authorized for use in treating mild-to-moderate COVID-19 in high risk adults.
SARS–CoV–2 Spike Impairs DNA Damage Repair and Inhibits V(D)J Recombination I...Guy Boulianne
This document summarizes a research study that investigated how the SARS-CoV-2 spike protein affects DNA damage repair and adaptive immunity. The main findings are:
1) The SARS-CoV-2 spike protein significantly inhibited DNA damage repair in in vitro cell line experiments by impeding the recruitment of key DNA repair proteins like BRCA1 and 53BP1 to damage sites.
2) DNA damage repair is required for effective V(D)J recombination, which generates antibody diversity in B cells and T cell receptors in T cells. Inhibiting DNA damage repair could therefore impair adaptive immunity.
3) The spike protein was found to localize in the cell nucleus, where it could interfere with DNA repair
1) Researchers mapped a genetic locus (belr1) that controls resistance to malaria liver stage infection in mice to a region containing the Trem2 gene.
2) They found that Trem2 expression closely correlates with resistance, and that Kupffer cells (liver macrophages) are the main cells expressing TREM2.
3) Trem2-deficient mice showed increased susceptibility to liver stage infection. TREM2 expression on Kupffer cells enables them to control parasite expansion in hepatocytes in vitro.
This document discusses tools for studying inflammation regulation and gene expression. It describes how QIAGEN offers products for various experimental techniques in inflammation research, including gene expression analysis using RT-PCR and real-time PCR. Case studies are presented on studying the roles of transcription factors and miRNAs in T-cell maturation and inflammation resolution, as well as analyzing DNA methylation changes related to aberrant gene expression in a vasculitis disease. The document provides an overview of experimental designs and results using QIAGEN products such as PCR arrays to examine differential gene and miRNA expression during inflammation.
Enhanced NK cell adoptive antitumor effects against breast cancer in vitroRahul Gupta
This is the research paper which i have been choosen for presentation "Enhance NK cell adoptive antitumor effects against breast cancer in vitro via blockade of the Transforming Growth Factor-Beta".
This document discusses plant virus induced genes. It explains that after a plant virus enters a host, it can induce genes that lead to either susceptibility or resistance. Susceptible genes provide conditions that allow for a successful viral infection, while resistance genes create antiviral conditions that prevent infection. Virus induced genes can also impact host metabolism and physiology. The document provides examples of susceptible genes involved in viral replication, movement, and suppression of gene silencing defenses.
a) Describe two ways the researcher could minimise experimenter bias i.docxbickerstaffinell
a) Describe two ways the researcher could minimise experimenter bias in this study.
b) Describe a way the researchers could minimise sample bias in this study. (distinct from your answers in part a)
Nuclear import of SARS-CoV-2 nucleocapsid (N) protein is not inhibited by overmectin B.A. Loney* and M.A. Larkey* *Bundoora Institute for Applied Medical Research. Introduction The causative agent of the current COVID-19 pandemic, SARS-CoV-2, is a single stranded positive sense RNA virus that is closely related to severe acute respiratory syndrome coronavirus (SARS-CoV). It has been previously shown that SARS-CoV-2 nucleocapsid (N) is present in the cytoplasm but can also actively localize to the nucleolus where it can interact with host proteins and also bind to viral RNA. It has also been previously shown that nuclear import of similar nucleocapsid proteins (including the HIV-1 nucleocapsid protein, NC) from other RNA viruses can be inhibited by the drug overmectin resulting in decreased viral replication efficiency. There are multiple nuclear import pathways mediated by different receptors. The two most common nuclear import pathways are mediated by the importin / heterodimer or by the importin homodimer. Overmectin has previously been demonstrated to inhibit nuclear import by disrupting the importin / pathway. In this study SARS-CoV-2 nucleocapsid (N) was transfected into Hela cells and the effectiveness of overmectin at inhibiting its nuclear import was determined. Methods Expression of N protein in the absence of other viral proteins. To investigate the nuclear import of SARS-CoV-2 N protein three constructs were created. 1. pEGFP-NCov2. The N gene (from SARS-CoV-2, isolate BJ04) was cloned into the eukaryotic expression vector pEGFP-C1 (Promega) such that expression of the N gene was under the control of a cytomegalovirus (CMV) polymerase Il promoter to express an N protein fusion with the C-terminal of EGFP. 2. pEGFP. The pEGFP-C1 expression vector alone. 3. EEGFP-TRF1. A positive control for nuclear import. The human TRF1 gene was cloned into the eukaryotic expression vector pEGFP-C1 to express an N protein fusion with the C-terminal of EGFP. TRF1 nuclear localisation has shown to be mediated by the importin homodimer. Hela cells were cultured in 12 separate culture plates at a density of 1 0 5 cells per 9.6 cm 2 plate with each plate containing 2 coverslips. Cells were cultured using Cell Biologics' Culture Complete Growth Medium with 5\% foetal calf serum at 3 7 C and 5% CO 2 . Cells were transfected with 2 g of either pEGFPNCov2 (plates 1,4,7 and 10), pEGFP (plates 2, 5, 8 and 11) or pEGFP-TRF1 (3, 6, 9 and 12) and 50 g of Lipofectamine (GibcoBRL). 12 hours post-transfection, even numbered plates were treated with 5 M overmectin in DMSO and odd numbered plates were left untreated. After 24 hours coverslips were removed, and the cells fixed. DAPI was added to visualise the nuclei and the localisation of GFP determined by fluorescent mic.
Washington Global Health Alliance Discovery Series
Robert Sinden, PhD
July 28, 2008
'Understanding Malaria Development in the Mosquito, and its Pivotal Role in the Formulation of Effective Control Strategies'
1015893 IAS characterization poster v10, final 071415Ira Dicker
BMS-955176 is a second-generation maturation inhibitor developed to improve upon the first generation maturation inhibitor bevirimat. BMS-955176 was designed through structure-activity relationships to maintain potency against viruses with gag polymorphisms associated with reduced susceptibility to bevirimat. BMS-955176 inhibits HIV protease cleavage of the gag polyprotein, binds tightly to HIV gag, and maintains antiviral activity against a diverse panel of HIV subtypes and drug resistant isolates. Phase I/II clinical trials demonstrated BMS-955176 monotherapy resulted in over a 1 log10 decline in HIV viral load. BMS-955176 has potential as an antiretroviral with a novel mechanism of action.
1. The document summarizes a seminar on how necrotrophic fungal pathogens hijack plant genes. Necrotrophs produce effector proteins called necrotrophic effectors (NEs) that interact with dominant host sensitivity genes and induce cell death.
2. Case studies of several plant-pathogen systems were described to illustrate the inverse gene-for-gene model. These include the interactions between the Tsn1 gene and T-toxin in maize, the LOV1 gene and victorin in Arabidopsis, and the Pc gene and PC-toxin in sorghum.
3. A detailed case study of the wheat gene Tsn1 that confers sensitivity to
Stress in the regulation of the immune response in LeishmaniasisFelix J. Tapia
The document summarizes research on the effects of acute stress on the immune response to Leishmania infection in mouse models. The research found that immobilization stress and odorant inhalation stress can alter the numbers and function of Langerhans cells, substances P and CGRP, and skew the Th1/Th2 response in resistant and susceptible mouse strains. This influences the natural course of Leishmania infection depending on the genetic background of the mouse.
These lecture slides, by Dr Sidra Arshad, offer a quick overview of the physiological basis of a normal electrocardiogram.
Learning objectives:
1. Define an electrocardiogram (ECG) and electrocardiography
2. Describe how dipoles generated by the heart produce the waveforms of the ECG
3. Describe the components of a normal electrocardiogram of a typical bipolar lead (limb II)
4. Differentiate between intervals and segments
5. Enlist some common indications for obtaining an ECG
6. Describe the flow of current around the heart during the cardiac cycle
7. Discuss the placement and polarity of the leads of electrocardiograph
8. Describe the normal electrocardiograms recorded from the limb leads and explain the physiological basis of the different records that are obtained
9. Define mean electrical vector (axis) of the heart and give the normal range
10. Define the mean QRS vector
11. Describe the axes of leads (hexagonal reference system)
12. Comprehend the vectorial analysis of the normal ECG
13. Determine the mean electrical axis of the ventricular QRS and appreciate the mean axis deviation
14. Explain the concepts of current of injury, J point, and their significance
Study Resources:
1. Chapter 11, Guyton and Hall Textbook of Medical Physiology, 14th edition
2. Chapter 9, Human Physiology - From Cells to Systems, Lauralee Sherwood, 9th edition
3. Chapter 29, Ganong’s Review of Medical Physiology, 26th edition
4. Electrocardiogram, StatPearls - https://www.ncbi.nlm.nih.gov/books/NBK549803/
5. ECG in Medical Practice by ABM Abdullah, 4th edition
6. Chapter 3, Cardiology Explained, https://www.ncbi.nlm.nih.gov/books/NBK2214/
7. ECG Basics, http://www.nataliescasebook.com/tag/e-c-g-basics
Integrating Ayurveda into Parkinson’s Management: A Holistic ApproachAyurveda ForAll
Explore the benefits of combining Ayurveda with conventional Parkinson's treatments. Learn how a holistic approach can manage symptoms, enhance well-being, and balance body energies. Discover the steps to safely integrate Ayurvedic practices into your Parkinson’s care plan, including expert guidance on diet, herbal remedies, and lifestyle modifications.
Basavarajeeyam is a Sreshta Sangraha grantha (Compiled book ), written by Neelkanta kotturu Basavaraja Virachita. It contains 25 Prakaranas, First 24 Chapters related to Rogas& 25th to Rasadravyas.
Osteoporosis - Definition , Evaluation and Management .pdfJim Jacob Roy
Osteoporosis is an increasing cause of morbidity among the elderly.
In this document , a brief outline of osteoporosis is given , including the risk factors of osteoporosis fractures , the indications for testing bone mineral density and the management of osteoporosis
Muktapishti is a traditional Ayurvedic preparation made from Shoditha Mukta (Purified Pearl), is believed to help regulate thyroid function and reduce symptoms of hyperthyroidism due to its cooling and balancing properties. Clinical evidence on its efficacy remains limited, necessitating further research to validate its therapeutic benefits.
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TEST BANK For Basic and Clinical Pharmacology, 14th Edition by Bertram G. Kat...rightmanforbloodline
TEST BANK For Basic and Clinical Pharmacology, 14th Edition by Bertram G. Katzung, Verified Chapters 1 - 66, Complete Newest Version.
TEST BANK For Basic and Clinical Pharmacology, 14th Edition by Bertram G. Katzung, Verified Chapters 1 - 66, Complete Newest Version.
TEST BANK For Basic and Clinical Pharmacology, 14th Edition by Bertram G. Katzung, Verified Chapters 1 - 66, Complete Newest Version.
TEST BANK For Basic and Clinical Pharmacology, 14th Edition by Bertram G. Katzung, Verified Chapters 1 - 66, Complete Newest Version.
REGULATION FOR COMBINATION PRODUCTS AND MEDICAL DEVICES.pptx
David Russell Thaler Lecture
1. The host/pathogen
interplay in
tuberculosis and
HIV/TB co-
infection.
dgr8@cornell.edu
M. tuberculosis (red) cholesterol (green), and fluorescent dextran (magenta) in macrophages
2. 1. The interplay between the immune
environment and bacterial stress responses.
1. The contribution of host-derived stresses to
the activity of anti-TB drugs
2. The impact of HIV on the host/pathogen
balance and is significance to active TB.
The Host Immune Environment
3. Bacteria in Medium
(+ cytochalasin D)
Bacteria on macrophages
(+ cytochalasin D)
Changes in gene
expression induced
by adherence
Bacteria on macrophages
(no cytochalasin D)
Changes in gene
expression induced
by phagocytosis
How does Mycobacterium detect
and respond to the intracellular
environment?
Kyle Rohde
Rohde, K, Abramovitch, R, and Russell, D.G. (2007) Mycobacterium tuberculosis invasion of macrophages:
Linking bacterial gene expression to environmental cues. Cell, Host and Microbe. 2: 352-364
4. A. Macrophage bound (+ cytochalasin D) B. 2 hours post internalization
A. Microarray comparison between Mtb in BMMO medium (+ cyto D) and Mtb bound to the surface of macrophages in the
presence of cytochalasin D for 30 minutes. B. Microarray comparison between Mtb in BMMO medium and Mtb bound to
BMMO and incubated for 2 hours in the absence of cyto D. The bacteria show a transcriptional response on phagocytosis
but not on binding to macrophages.
upregulated
downregulated
Transcriptional response 2 hrs post-infection
5. Production of ROIs
Acidification of the phagosome
Production of RNIs
Acquisition of lysosomal hydrolases, ie.
proteinases
lipases
glucosidases
nucleotidases
Nutrient limitation
Intracellular “cues” that Mtb may sense
and utilize as its GPS system.
Physiological imperatives
v’s
off-target responses
6. Mycobacterium tuberculosis Reporter Strains
environmentally-
responsive
promoter
mCherry
gfp constitutively-active
promoter
hspX: Hypoxia and NO
rv2390c: [Cl-] and low pH
Tan, S., Sukumar, N., Abramovitch, R.B., Parish, T., and
Russell, D.G. (2013) Mycobacterium tuberculosis senses
chloride and pH as indicators of the immune status of its host
cell. PLoS Pathogens. 9 (4), e1003282
Shumin Tan
Neelima Sukamar
7. Erdman rv2390c’::GFP a Sensor for phagosome maturation
IgG-coated reporter
beads in phagosomes
( senses [Cl-]
( senses pH]
rpfD’::gfp - reporter Mtb
in defined buffers
As pH goes down, [Cl-] goes up.
Both increase activity of the 2390c promoter activity.
Bis(carboxylpropyl) biacridinium
9. Erdman rv2390c’::GFP smyc’::mCherry infection - WT vs. IFNγ-/-
14 days 28 days 35 days
Time post-infection
GFP/µm3
p<0.0001 p<0.0001 p<0.0001
IFNγ-/- mice infection
WT mice infection
10. Nitric Oxide is a major activator of DosR as shown by the reporter strain
Erdman hspX’::GFP smyc’::mCherry
GFP expression scored as a function of bacterial volume by Volocity (Perkin Elmer)
Tan, S., Sukumar, N., Abramovitch, R.B., Parish, T., and Russell, D.G. (2013) Mycobacterium
tuberculosis senses chloride and pH as indicators of the immune status of its host cell. PLoS Pathogens.
9 (4), e1003282
22. PBS Vac
Day 14
PBS Vac
Day 28
PBS Vac
Day 42
PBS Vac
Day 56
Quantitation of rv2390c’::GFP in C57BL/6 mice
Lower rv2390c’::GFP expression in vaccinated mice
p < 0.0001 p < 0.0001 p < 0.0001 p < 0.0001
26. The % Foci-Positive Bacilli is inversely proportional to the Immune Response.
Number of foci-positive Mtb scored at 14 days post challenge infection
27. PBS Vac
INH
PBS Vac
RIF
Drug Susceptibility Assay: D14 pi
p < 0.0001
N.S.
Increased INH resistance early on in vaccinated mice
28. What do the reporter strains tell us?
1. DosR reporter: Induction correlates well with the acquired immune
response and the presence of IFN-g and iNOS. Expression is accelerated
by vaccination.
2. Drug sensitivity: Sensitivity to INH in Mtb from 14d infection is higher in
naive than vaccinated mice implying that these bacteria are more
actively replicating.
3. ssB::GFP reporter: Scoring of replication forks indicates that replication
correlates inversely with the development of the acquired immune
response and is dependent on the presence of IFN-g.
3. Chloride reporter: induced early but trends down as the acquired
immune response develops. Is not induced in immune incompetent mice
so early neutrophil activity? Inverse correlation with granuloma
establishment?
29. + drug
Yancheng Liu
Can we identify the host contribution to
drug-induced death in the host?
30. Bacteria exposed to
drugs inside cells
Bacteria exposed to
drugs in liquid culture
Bacteria exposed to
INH
ETH
PYR
RIF
at concentrations that
induce 1/2 log death at 48 hrs
(2-5 X MIC)
Bacterial RNA isolated
at 4hr and 24 hr time
periods post-exposure
to each drug and
analyzed by microarray
Transcriptional profile of M. tuberculosis exposed to a panel of 4 different drugs
The role of environmental pressure(s) in
drug-mediated killing of Mtb.
31. 1.0E+05
1.0E+06
1.0E+07
0 1 2 3 4 5 6 7 8 9 10
CFU/ml
DMSO
INH
RIF
PZA
EMB
DPI
Bacterial CFUs following treatment of intracellular Mtb with front-line drugs. Macrophages were
infected 5 days previously, treated with drug for 4 and 24 hrs, then isolated and processed for RNA
purification.
DMSO
INH (0.2 mg/ml)
RIF (0.4 mg/ml)
PZA (200 mg/ml)
EMB (12 mg/ml)
Impact of Drug Pressure on Survival of Intracellular Mtb.
Drug addition
RNA isolation
32. 196 248128
Induced by
INH in broth
Induced by
INH in mØ
Expression ratio in broth
ExpressionratioinmØ
fadE23
fadE24
fbpC
accD6
rv1772
iniA
iniC
iniB
efpA
kasA
kasB
rv1592c
fabD
acpM
ahpC
rv0448c
rv0449c
mpt70
mpt83
MT2941
rv2874
rv3290c
Macrophage-specific
response
Focusing on INH: One can resolve both drug-specific responses (common to MØ and broth)
and MØ-specific-responses observed only in the MØ
33. In vitro stimulus
Genes overlapped with mφ-
specific INH induced list
(146 genes)
Genes overlapped by
random chanceh
Acid stress (pH=5.5)a (291 genes) 35 8
Nutrient starvationb (440 genes) 37 12
Oxidative stress (H2O2)c (319 genes) 24 9
NO/CO/hypoxia(Dos regulon)d (50 genes) 16 1
Dos-independent hypoxiae (290 genes) 14 8
SDS-mediated membrane damagef (211 genes) 30 6
Triton-mediated membrane damageg (73 genes) 20 2
Table 1. Comparison of mφ-specific INH induced genes to in vitro stimuli induced genes.
The MØ-specific responses are focused primarily on known
host-cell mediated defense stresses.
34. Commonly induced genes Commonly repressed genes
4-Way Venn Diagram of Genes induced by
4 frontline drugs in Mtb in MØ
35. Table 2. Comparison of mφ-specific commonly induced genes to in vitro stimuli induced genes.
In vitro stimulus
Genes overlapped with mφ-
specific commonly induced
list (108 genes)
Genes overlapped by
random chanceh
Acid stress (pH=5.5)a (291 genes) 28 6
Nutrient starvationb (440 genes) 27 9
Oxidative stress (H2O2)c (319 genes) 23 7
NO/CO/hypoxia(Dos regulon)d (50 genes) 18 1
Dos-independent hypoxiae (290 genes) 8 6
SDS-mediated membrane damagef (211
genes)
27 5
Triton-mediated membrane damageg (73
genes)
22 2
Relaxing the stringency to include genes upregulated by
3 of 4 drugs in Mtb in MØ – gives a profile similar to INH.
36. Interpretation and implications for drug development
The drug hits the bug and reduces its
fitness via a drug-specific route
The reduction in fitness renders the
bacterium more susceptible to its
environment and host-derived stresses.
This model contains an implied prediction: Compounds
that block the ability of Mtb to deal with these host derived
stresses should enhance the activity of anti-Mtb drugs.
37. Synergy: Exploitation of the host “stresses” that
are intensified by drug pressure renders Mtb
more susceptible to known drugs.
Identifies the potential for exploiting host-
derived pressures to enhance drug action in vivo
38. Human macrophages
infected with Mtb
(mCherry) and HIV
(pseudotyped virus
with GFP)
Co-infections with HIV and M. tuberculosis
HIV is the biggest
risk factor for active
tuberculosis, and this
risk is impacted
minimally by ART.
Why?
40. Work with Henry Mwandumba and Kondwani Jambo
Impact of HIV infection on alveolar macrophage function
41. FACS plots show control and HIV-infected human monocyte-derived following incubation with a FISH
probe directed against HIV gag or gp120 mRNA sequence, in the Y axis. Fluorescent confocal
micrograph of the FISH label of 8E5 cells is shown on the right
Development of a mRNA FISH detection system for HIV
Stellaris probes developed in collaboration with BioSearch Technologies Inc.
42. The Make-up of the Cellular Populations in the Lung
The cells in the lung airways are approximately 75% macrophages and 25%
lymphocytes. This is not altered by asymptomatic HIV infection.
43. HIV is preferentially located in the alveolar macrophages.
In all individuals examined the %
abundance of HIV-infected cells is
higher in the macrophage
population than it is in the
lymphocyte population
Jambo, K.C., Banda, D., Kankwatira, A., Sukumar, N., Allain, T., Heyderman, R.S., Russell, D.G., and
Mwandumba, H.C. (2014) Small alveolar macrophages are infected preferentially by HIV and
exhibit impaired phagocytic function. Mucosal Immunology. PMID: 24472847
44. HIV Infection in vivo causes a profound shift in CD phenotype.
AMs from all 6 HIV+ve individuals examined show a down-regulation in
expression of CD206 (Mannose receptor), HLA-DR, and CD71 (Transferrin
receptor), while the expression of CD45 is unaltered.
45. Thanks to:
Henry Mwandumba and
Kondwani Jambo,
MLW Labs, Blantyre, Malawi.
The NIH: NIAID & NHLBI.
Roadside snacks in Malawi