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Clinical Database
--From Basic to
Application
陳勁辰
Motivation
• How well did we do?
• From our experience, how is your
operation risk?
Solution
• A: Past data
• B: Data analysis
• A + B = Clinical database!
Database Example
4
Data Variables
(Computer)
• Text
• Number
• Date
• Administrative data
Data Variables
(Epidemiology)
• X1, X2, ..., Xn -> Y
• Predictor: Xi
• Outcome: Y
Data Variables
(Statistics)
• Scale: Continuous. eg. body weight
• Ordinal: Grading. eg. severity
• Nominal: Category. eg. side
Data Variables
(Surgery)
• Demographics
• Baseline
• Preop
• Op
• Postop
• Outcome
Variable Definition
• Yes / No
• Timing
• Category
• Measurement
Database Example
10
Paperwork
• Question
• Chart review
• Paper writing
• Data key-in
• Analysis
Hospital Information
System (HIS)
• Help from IT
• Variable definitions
• SQL (Structured Query Language)
–SELECT [X1], [X2] FROM [DB]
WHERE [X3] ? [X4]
–Xi? DB?
Data Collection from
HIS
• Diagnosis: ICD9
• Operation: NHI
• Procedures: NHI
–IABP, MV, HD,...
• Drugs: ?
Cheng-Hsin General
Hospital
ICD-9 Codes and Diagnoses
 DM=250.*
 COPD=490-492.* or 496
 PAOD=443.*-444.*
 CVA 434.91 or 434.11 or 997.02
 Acute renal failure=584.*
 Chronic renal failure=586.*-588.*
 Critical=785.51 or “shock” or “IABP” or “ECMO”
 UA=413.* or “angina”
 LV dysfunction = 428.* or “critical” or “CHF” or “ICMP”
 AMI=410.* or “AMI” or “infarction”
 PHT=416.* or “pulmonary hypertension”
 IE=424.*
Cheng-Hsin General
Hospital
Nat’l Health Insurance Codes
Operations Postop Course
 CABG*1= 68023
 CABG+LIMA= 68023X1/2
 CABG*2=68024
 CABG*3=68025
 MVA/TVA=68015
 AVR/MVR/TVR=68016
 DVR=68017
 AVR+MVR+TVR=68018
 Redo=68003
 Ventilator=57001
 IABP=33079
 HD=58001
 CVVH=58014
 “Text data-mining”
Database Steps
• Data collection
• Data validation
• Data analysis
Interface: Data Entry
• V1, V2, ..., Vn
• Q1: V1’
• Q2: V2’
• Q3: V3’
Data Analysis:
Statistics
• Descriptive (敘述性): Tables, Graphs
• Inferential (推論性): p-values
Inferential Statistics
• Different or not?
• Related or not?
• Predictor or not?
Different?
• Group
• Variable to compare
Related?
• Correlation
• Variable-1
• Variable-2
Predictor?
• Predictor variables X1, X2,...Xn
• Outcome variable Y
–Scale
–Event (Y/N)
–Time-event
EuroScore Calculator
http://www.euroscore.org
Nashef SA et al: European system for cardiac operative risk
evaluation (EuroSCORE). Eur J Cardiothorac Surg 1999
Jul;16(1):9-13
EuroScore Calculator, Additive
http://www.euroscore.org
Nashef SA et al: European system for cardiac operative risk
evaluation (EuroSCORE). Eur J Cardiothorac Surg 1999
Jul;16(1):9-13
EuroScore Calculator, Logistic
Nashef SA et al: European system for cardiac operative risk
evaluation (EuroSCORE). Eur J Cardiothorac Surg 1999
Jul;16(1):9-13
Roques F et al: The logistic EuroSCORE. Eur Heart J. 2003 May;24(9):882-3
• EuroScore since 1995, 15 years old
• 36 Questions
–Patient details
–Patient
–Heart
–Operation
–Outcome
EuroScore 2010
Commercial Package
• “Interface”
• Data Entry
• Data Analysis
Customization
• Which variables
• Possible questions
People Factors
• Work-flow
• Work-load
• Motivations
Cheng-Hsin General
Hospital
ICD-9 Codes and Diagnoses
 DM=250.*
 COPD=490-492.* or 496
 PAOD=443.*-444.*
 CVA 434.91 or 434.11 or 997.02
 Acute renal failure=584.*
 Chronic renal failure=586.*-588.*
 Critical=785.51 or “shock” or “IABP” or “ECMO”
 UA=413.* or “angina”
 LV dysfunction = 428.* or “critical” or “CHF” or “ICMP”
 AMI=410.* or “AMI” or “infarction”
 PHT=416.* or “pulmonary hypertension”
 IE=424.*
Cheng-Hsin General
Hospital
Nat’l Health Insurance Codes
Operations Postop Course
 CABG*1= 68023
 CABG+LIMA= 68023X1/2
 CABG*2=68024
 CABG*3=68025
 MVA/TVA=68015
 AVR/MVR/TVR=68016
 DVR=68017
 AVR+MVR+TVR=68018
 Redo=68003
 Ventilator=57001
 IABP=33079
 HD=58001
 CVVH=58014
 “Text data-mining”
Cheng-Hsin General
Hospital
Definition of Isolated CABG
1. CABG without any cardiac procedures such as
valvular, aortic, Af ablation, etc.
2. Excluding redo-CABG
3. Not excluding pacemaker implantation or
vascular procedures such as carotid
endarterectomy or PAOD bypass.
Cheng-Hsin General
Hospital
Results: Overall
 From 2006-01-1 to 2008-12-31
 CABG-included operations N=1066
 Combined cardiac procedures: 22.0%
 Concomitant double-valve replacement, Bentall’s
operation, heart transplantation, redo, etc.
22%
78%
N=1,066
Combined
CABG only
Cheng-Hsin General
Hospital
Results: Isolated CABG
 Included Isolated CABG N=757
 EuroScore (additive)= 3.1 (2.9~3.2)
 EuroScore (logistic)= 3.3% (2.9%~3.6%)
 Early graft failure: N=3 (0.4%)
 Redo CABG within the 3-year period
 On-pump arrest method: N=703 (92.9%)
 Off-pump or on-pump beating method: N=54
(7.1%)
Cheng-Hsin General
Hospital
On-pump Arrest CABG—Preop Data
 First-time on-pump arrest CABG: N=703
 EuroScore (additive)= 2.9 (2.7~3.1)
 EuroScore (logistic)= 3.0% (2.7%~3.2%)
 Female: 23.8% (20.6%~26.9%)
 Age at operation: 63.9±10.3 years (63.1~64.6)
 Concomitant carotid endarterectomy: 2.4%
(1.3%~3.6%)
 Emergent: 8.7% (6.6%~10.8%)
 LM-involved disease: 16.1% (13.4%~18.8%).
Cheng-Hsin General
Hospital
On-pump Arrest CABG--Op Data
 LIMA use: 68.9% (65.4%~72.3%)
 No. of distal anastomosis: 3.7±1.0 (median=4,
range=1~7)
 Op time : 8.0±1.5 hr (7.9~8.1)
 Pumping time: 135.0±44.2 min (131.7~138.3)
 Ischemic time: 83.2±30.0 min (81.0~85.4)
Cheng-Hsin General
Hospital
On-pump Arrest CABG--Postop
Data
 New postop IABP: 2.7% (1.5%~3.9%)
 Lung complication (atelectasis –infection): 9.5%
(7.3%~11.7%)
 Reopen for bleeding: 1.9% (0.9%~2.8%)
 New-onset CVA (symptomatic): 2.3%
(1.2%~3.4%)
 New-onset acute renal failure (hemodialysis):
3.7% (2.3%~5.1%)
Cheng-Hsin General
Hospital
On-pump Arrest CABG--Postop
Data
 Surgical mortality (within 30 days): 1.6%
(0.6%~2.5%)
 Hospital mortality (in the same in-hospital
course): 1.9% (0.9%~2.8%)
 Excluding surgical mortality and postop CVA
(N=703)
 Off ventilator within 24 hr: 67.1% (63.7%~70.6%)
 Median ICU stay: 5 days
 Median hospital stay: 15 days.
Cheng-Hsin General
Hospital
On-pump Arrest CABG--All-
Cause Mortality
 Kaplan-Meier curve for freedom from all-cause
mortality
 1-year: 97.3% (95.7%~98.3%)
 2-year: 96.8% (94.7%~98.1%)
 3-year: 96.2% (93.6%~97.7%)
Cheng-Hsin General
Hospital
Variables for EuroScores
Age Unstable angina
Gender LV dysfunction
COPD Recent MI
PAOD Pulm. HTN
CVA
Redo Emergent op
Renal insufficiency Combined proc.
IE Op on thoracic Ao
Preop critical Post. Infarct VSR
Fresh On-pump Arrest CABG--
All-Cause Mortality
Cheng-Hsin General
Hospital
Variables Included in the
Regression Analyses
EuroScore (additive)
EuroScore (logistic)
LM disease
Carotid procedure
Operation time
Ischemia time
Pumping time
No. of distal anastomoses
LIMA use (elective cases)
Cheng-Hsin General
Hospital
Predictors for Surgical
Mortality (Within 30 Days)
Predictor OR 95% CI P-value
EuroScore
(additive)
1.3 1.1~1.6 0.003
EuroScore
(logistic)%
1.1 1.04~1.2 0.002
Cheng-Hsin General
Hospital
Predictors for Hospital
Mortality (Same Hosp. Course)
Predictor OR 95% CI P-value
EuroScore
(additive)
1.6 1.3~1.9 <0.001
EuroScore
(logistic)%
1.14 1.07~1.23 <0.001
Ischemia Time
(hr)
2.9 1.1~7.7 0.037
Pumping Time
(hr)
2.9 1.5~5.7 0.002
LIMA (non-ER) 0.26 0.07~0.92 0.036
Cheng-Hsin General
Hospital
Predictors for All-Cause
Mortality (Up to 3 Years)
Predictor HR 95% CI P-value
EuroScore
(additive)
1.4 1.2~1.6 <0.001
EuroScore
(logistic)%
1.1 1.05~1.13 <0.001
LIMA (non-ER) 0.3 0.10~0.74 0.011
Cheng-Hsin General
Hospital
Predictors for Off-Ventilator
Within 24 Hours
Predictor OR 95% CI P-value
EuroScore (additive) 0.8 0.74~0.85 <0.001
EuroScore (logistic)% 0.85 0.81~0.9 <0.001
Carotid Op 0.14 0.046~0.44 0.001
Operation Time (hr) 0.75 0.67~0.84 <0.001
Ischemia Time (hr) 0.60 0.43~0.82 0.001
Pumping Time (hr) 0.59 0.47~0.74 <0.001
No. Anastomosis 0.80 0.68~0.93 0.005
Cheng-Hsin General
Hospital
Predictors for Postop Lung
Complications
Predictor OR 95% CI P-value
EuroScore
(additive)
1.23 1.13~1.35 <0.001
EuroScore
(logistic)%
1.11 1.05~1.17 <0.001
Cheng-Hsin General
Hospital
Predictors for Postop New
IABP
Predictor OR 95% CI P-value
EuroScore
(additive)
1.3 1.1~1.5 0.001
EuroScore
(logistic)%
1.1 1.03~1.2 0.005
Cheng-Hsin General
Hospital
Predictors for Postop New-
Onset CVA
Predictor OR 95% CI P-value
EuroScore
(additive)
1.3 1.1~1.5 0.004
EuroScore
(logistic)%
1.1 1.03~1.2 0.006
Carotid Op 6.4 1.3~30.7 0.020
Cheng-Hsin General
Hospital
Predictors for Postop New-
Onset Acute Renal Failure
Predictor OR 95% CI P-value
EuroScore
(additive)
1.16 1.01~1.33 0.037
EuroScore
(logistic)%
1.08 1.02~1.14 0.010
LIMA (non-ER) 0.34 0.14~0.82 0.016
Cheng-Hsin General
Hospital
EuroScores Predict Outcomes
 Higher EuroScores predict worse outcomes.
 Morality
 Surgical mortality (within 30 days)
 Hospital mortality (in the same hosp. course)
 All-Cause mortality (up to 3 years)
 Complications
 Lung complications (atelectasis-infection)
 Prolonged ventilator use over 24 hours
 Postop new IABP
 Postop new-onset CVA
 Postop new-onset acute renal failure

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Clinical Database

  • 1. Clinical Database --From Basic to Application 陳勁辰
  • 2. Motivation • How well did we do? • From our experience, how is your operation risk?
  • 3. Solution • A: Past data • B: Data analysis • A + B = Clinical database!
  • 5. Data Variables (Computer) • Text • Number • Date • Administrative data
  • 6. Data Variables (Epidemiology) • X1, X2, ..., Xn -> Y • Predictor: Xi • Outcome: Y
  • 7. Data Variables (Statistics) • Scale: Continuous. eg. body weight • Ordinal: Grading. eg. severity • Nominal: Category. eg. side
  • 8. Data Variables (Surgery) • Demographics • Baseline • Preop • Op • Postop • Outcome
  • 9. Variable Definition • Yes / No • Timing • Category • Measurement
  • 11. Paperwork • Question • Chart review • Paper writing • Data key-in • Analysis
  • 12. Hospital Information System (HIS) • Help from IT • Variable definitions • SQL (Structured Query Language) –SELECT [X1], [X2] FROM [DB] WHERE [X3] ? [X4] –Xi? DB?
  • 13. Data Collection from HIS • Diagnosis: ICD9 • Operation: NHI • Procedures: NHI –IABP, MV, HD,... • Drugs: ?
  • 14. Cheng-Hsin General Hospital ICD-9 Codes and Diagnoses  DM=250.*  COPD=490-492.* or 496  PAOD=443.*-444.*  CVA 434.91 or 434.11 or 997.02  Acute renal failure=584.*  Chronic renal failure=586.*-588.*  Critical=785.51 or “shock” or “IABP” or “ECMO”  UA=413.* or “angina”  LV dysfunction = 428.* or “critical” or “CHF” or “ICMP”  AMI=410.* or “AMI” or “infarction”  PHT=416.* or “pulmonary hypertension”  IE=424.*
  • 15. Cheng-Hsin General Hospital Nat’l Health Insurance Codes Operations Postop Course  CABG*1= 68023  CABG+LIMA= 68023X1/2  CABG*2=68024  CABG*3=68025  MVA/TVA=68015  AVR/MVR/TVR=68016  DVR=68017  AVR+MVR+TVR=68018  Redo=68003  Ventilator=57001  IABP=33079  HD=58001  CVVH=58014  “Text data-mining”
  • 16. Database Steps • Data collection • Data validation • Data analysis
  • 17. Interface: Data Entry • V1, V2, ..., Vn • Q1: V1’ • Q2: V2’ • Q3: V3’
  • 18. Data Analysis: Statistics • Descriptive (敘述性): Tables, Graphs • Inferential (推論性): p-values
  • 19.
  • 20. Inferential Statistics • Different or not? • Related or not? • Predictor or not?
  • 23. Predictor? • Predictor variables X1, X2,...Xn • Outcome variable Y –Scale –Event (Y/N) –Time-event
  • 24.
  • 25.
  • 26. EuroScore Calculator http://www.euroscore.org Nashef SA et al: European system for cardiac operative risk evaluation (EuroSCORE). Eur J Cardiothorac Surg 1999 Jul;16(1):9-13
  • 27. EuroScore Calculator, Additive http://www.euroscore.org Nashef SA et al: European system for cardiac operative risk evaluation (EuroSCORE). Eur J Cardiothorac Surg 1999 Jul;16(1):9-13
  • 28. EuroScore Calculator, Logistic Nashef SA et al: European system for cardiac operative risk evaluation (EuroSCORE). Eur J Cardiothorac Surg 1999 Jul;16(1):9-13 Roques F et al: The logistic EuroSCORE. Eur Heart J. 2003 May;24(9):882-3
  • 29. • EuroScore since 1995, 15 years old • 36 Questions –Patient details –Patient –Heart –Operation –Outcome EuroScore 2010
  • 30.
  • 31.
  • 32.
  • 33.
  • 34.
  • 35.
  • 36. Commercial Package • “Interface” • Data Entry • Data Analysis
  • 38. People Factors • Work-flow • Work-load • Motivations
  • 39. Cheng-Hsin General Hospital ICD-9 Codes and Diagnoses  DM=250.*  COPD=490-492.* or 496  PAOD=443.*-444.*  CVA 434.91 or 434.11 or 997.02  Acute renal failure=584.*  Chronic renal failure=586.*-588.*  Critical=785.51 or “shock” or “IABP” or “ECMO”  UA=413.* or “angina”  LV dysfunction = 428.* or “critical” or “CHF” or “ICMP”  AMI=410.* or “AMI” or “infarction”  PHT=416.* or “pulmonary hypertension”  IE=424.*
  • 40. Cheng-Hsin General Hospital Nat’l Health Insurance Codes Operations Postop Course  CABG*1= 68023  CABG+LIMA= 68023X1/2  CABG*2=68024  CABG*3=68025  MVA/TVA=68015  AVR/MVR/TVR=68016  DVR=68017  AVR+MVR+TVR=68018  Redo=68003  Ventilator=57001  IABP=33079  HD=58001  CVVH=58014  “Text data-mining”
  • 41. Cheng-Hsin General Hospital Definition of Isolated CABG 1. CABG without any cardiac procedures such as valvular, aortic, Af ablation, etc. 2. Excluding redo-CABG 3. Not excluding pacemaker implantation or vascular procedures such as carotid endarterectomy or PAOD bypass.
  • 42. Cheng-Hsin General Hospital Results: Overall  From 2006-01-1 to 2008-12-31  CABG-included operations N=1066  Combined cardiac procedures: 22.0%  Concomitant double-valve replacement, Bentall’s operation, heart transplantation, redo, etc. 22% 78% N=1,066 Combined CABG only
  • 43. Cheng-Hsin General Hospital Results: Isolated CABG  Included Isolated CABG N=757  EuroScore (additive)= 3.1 (2.9~3.2)  EuroScore (logistic)= 3.3% (2.9%~3.6%)  Early graft failure: N=3 (0.4%)  Redo CABG within the 3-year period  On-pump arrest method: N=703 (92.9%)  Off-pump or on-pump beating method: N=54 (7.1%)
  • 44. Cheng-Hsin General Hospital On-pump Arrest CABG—Preop Data  First-time on-pump arrest CABG: N=703  EuroScore (additive)= 2.9 (2.7~3.1)  EuroScore (logistic)= 3.0% (2.7%~3.2%)  Female: 23.8% (20.6%~26.9%)  Age at operation: 63.9±10.3 years (63.1~64.6)  Concomitant carotid endarterectomy: 2.4% (1.3%~3.6%)  Emergent: 8.7% (6.6%~10.8%)  LM-involved disease: 16.1% (13.4%~18.8%).
  • 45. Cheng-Hsin General Hospital On-pump Arrest CABG--Op Data  LIMA use: 68.9% (65.4%~72.3%)  No. of distal anastomosis: 3.7±1.0 (median=4, range=1~7)  Op time : 8.0±1.5 hr (7.9~8.1)  Pumping time: 135.0±44.2 min (131.7~138.3)  Ischemic time: 83.2±30.0 min (81.0~85.4)
  • 46. Cheng-Hsin General Hospital On-pump Arrest CABG--Postop Data  New postop IABP: 2.7% (1.5%~3.9%)  Lung complication (atelectasis –infection): 9.5% (7.3%~11.7%)  Reopen for bleeding: 1.9% (0.9%~2.8%)  New-onset CVA (symptomatic): 2.3% (1.2%~3.4%)  New-onset acute renal failure (hemodialysis): 3.7% (2.3%~5.1%)
  • 47. Cheng-Hsin General Hospital On-pump Arrest CABG--Postop Data  Surgical mortality (within 30 days): 1.6% (0.6%~2.5%)  Hospital mortality (in the same in-hospital course): 1.9% (0.9%~2.8%)  Excluding surgical mortality and postop CVA (N=703)  Off ventilator within 24 hr: 67.1% (63.7%~70.6%)  Median ICU stay: 5 days  Median hospital stay: 15 days.
  • 48. Cheng-Hsin General Hospital On-pump Arrest CABG--All- Cause Mortality  Kaplan-Meier curve for freedom from all-cause mortality  1-year: 97.3% (95.7%~98.3%)  2-year: 96.8% (94.7%~98.1%)  3-year: 96.2% (93.6%~97.7%)
  • 49. Cheng-Hsin General Hospital Variables for EuroScores Age Unstable angina Gender LV dysfunction COPD Recent MI PAOD Pulm. HTN CVA Redo Emergent op Renal insufficiency Combined proc. IE Op on thoracic Ao Preop critical Post. Infarct VSR
  • 50. Fresh On-pump Arrest CABG-- All-Cause Mortality
  • 51. Cheng-Hsin General Hospital Variables Included in the Regression Analyses EuroScore (additive) EuroScore (logistic) LM disease Carotid procedure Operation time Ischemia time Pumping time No. of distal anastomoses LIMA use (elective cases)
  • 52. Cheng-Hsin General Hospital Predictors for Surgical Mortality (Within 30 Days) Predictor OR 95% CI P-value EuroScore (additive) 1.3 1.1~1.6 0.003 EuroScore (logistic)% 1.1 1.04~1.2 0.002
  • 53. Cheng-Hsin General Hospital Predictors for Hospital Mortality (Same Hosp. Course) Predictor OR 95% CI P-value EuroScore (additive) 1.6 1.3~1.9 <0.001 EuroScore (logistic)% 1.14 1.07~1.23 <0.001 Ischemia Time (hr) 2.9 1.1~7.7 0.037 Pumping Time (hr) 2.9 1.5~5.7 0.002 LIMA (non-ER) 0.26 0.07~0.92 0.036
  • 54. Cheng-Hsin General Hospital Predictors for All-Cause Mortality (Up to 3 Years) Predictor HR 95% CI P-value EuroScore (additive) 1.4 1.2~1.6 <0.001 EuroScore (logistic)% 1.1 1.05~1.13 <0.001 LIMA (non-ER) 0.3 0.10~0.74 0.011
  • 55. Cheng-Hsin General Hospital Predictors for Off-Ventilator Within 24 Hours Predictor OR 95% CI P-value EuroScore (additive) 0.8 0.74~0.85 <0.001 EuroScore (logistic)% 0.85 0.81~0.9 <0.001 Carotid Op 0.14 0.046~0.44 0.001 Operation Time (hr) 0.75 0.67~0.84 <0.001 Ischemia Time (hr) 0.60 0.43~0.82 0.001 Pumping Time (hr) 0.59 0.47~0.74 <0.001 No. Anastomosis 0.80 0.68~0.93 0.005
  • 56. Cheng-Hsin General Hospital Predictors for Postop Lung Complications Predictor OR 95% CI P-value EuroScore (additive) 1.23 1.13~1.35 <0.001 EuroScore (logistic)% 1.11 1.05~1.17 <0.001
  • 57. Cheng-Hsin General Hospital Predictors for Postop New IABP Predictor OR 95% CI P-value EuroScore (additive) 1.3 1.1~1.5 0.001 EuroScore (logistic)% 1.1 1.03~1.2 0.005
  • 58. Cheng-Hsin General Hospital Predictors for Postop New- Onset CVA Predictor OR 95% CI P-value EuroScore (additive) 1.3 1.1~1.5 0.004 EuroScore (logistic)% 1.1 1.03~1.2 0.006 Carotid Op 6.4 1.3~30.7 0.020
  • 59. Cheng-Hsin General Hospital Predictors for Postop New- Onset Acute Renal Failure Predictor OR 95% CI P-value EuroScore (additive) 1.16 1.01~1.33 0.037 EuroScore (logistic)% 1.08 1.02~1.14 0.010 LIMA (non-ER) 0.34 0.14~0.82 0.016
  • 60. Cheng-Hsin General Hospital EuroScores Predict Outcomes  Higher EuroScores predict worse outcomes.  Morality  Surgical mortality (within 30 days)  Hospital mortality (in the same hosp. course)  All-Cause mortality (up to 3 years)  Complications  Lung complications (atelectasis-infection)  Prolonged ventilator use over 24 hours  Postop new IABP  Postop new-onset CVA  Postop new-onset acute renal failure