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H A N D W R I T I N G
M E TA B O L I S M
H I R O N O B U N A K A M U R A
Final Presentation
BioHackAcademy 20190402
W H O A M I
Name : Hironobu Nakamura
• IT Engineer in Tokyo (MDM / M2M / IoT)
• Sometimes making art work 

(MUTEK.JP / ArtHackDay / IFSV)
• Biology background
• Radiation biology (Human cell)
• Genetics (Drosophila)
Erwin Schrödinger is one of
biohackers ?
Discussed about life using
Physicist's approach
L I F E - M AT E R I A L - I N F O R M AT I O N
• What is life?
• What is material?
• What is information?
Life has all features.
U S E M I C R O O R G A N I S M A S M AT E R I A L
A N D I N F O R M AT I O N
P R E V I O U S S T U D I E S
• 90 petabytes of data into 41 grams of DNA.
https://www.nature.com/news/synthetic-double-helix-
faithfully-stores-shakespeare-s-sonnets-1.12279
P R E V I O U S S T U D I E S
• Over five million bits of data were stored and all the
DNA files reproduced the information between
99.99% and 100% accuracy encoding the data in a
series of overlapping short oligonucleotides.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3672958/
P R E V I O U S S T U D I E S
• DNACloud: Encoding computer files to DNA data
http://www.guptalab.org/dnacloud/index.html
P R E V I O U S S T U D I E S
• Method for random access of data items stored in
DNA.
https://spectrum.ieee.org/the-human-os/biomedical/
devices/dna-data-storage-gets-random-access
P R E V I O U S S T U D I E S
• Fully automated system to encode and decode data
in DNA.
https://news.microsoft.com/innovation-stories/hello-
data-dna-storage/
U S E M I C R O O R G A N I S M A S M AT E R I A L
A N D I N F O R M AT I O N
P R O J E C T
Write down characters
and translate data to dna code
P H O T O B Y A A R O N B U R D E N O N U N S P L A S H
T R A N S L AT E D ATA T O D N A C O D E
Text unicode data
Coordinate data of handwriting
↓
Binary data

0 0 1 1 0 1 0 0 1 .....
↓
DNA data
A T T G C C A .....
Genetically inject DNA data into microbe DNA, and
culture them.
P H O T O B Y M I C H A E L S C H I F F E R O N U N S P L A S H
D N A S Y N T H E S I S A N D T R A M S F O R M AT I O N
• DNA syntehtize
• Phosphoramidite method
• DNA synthesizer
• Order DNA
• DNA transformation
1. Create vecotor with synthetic DNA fragment
2. Transformation by homologious recombination
Sequencing DNA in microbe and pick out the data
https://nanoporetech.com/products/flongle
Regenerate handwriting information
L I F E C A N B E I N F O R M AT I O N M AT E R I A L ?
T H A N K Y O U

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BioHack Academy final presentation

  • 1. H A N D W R I T I N G M E TA B O L I S M H I R O N O B U N A K A M U R A Final Presentation BioHackAcademy 20190402
  • 2. W H O A M I Name : Hironobu Nakamura • IT Engineer in Tokyo (MDM / M2M / IoT) • Sometimes making art work 
 (MUTEK.JP / ArtHackDay / IFSV) • Biology background • Radiation biology (Human cell) • Genetics (Drosophila)
  • 3. Erwin Schrödinger is one of biohackers ? Discussed about life using Physicist's approach
  • 4. L I F E - M AT E R I A L - I N F O R M AT I O N • What is life? • What is material? • What is information? Life has all features.
  • 5. U S E M I C R O O R G A N I S M A S M AT E R I A L A N D I N F O R M AT I O N
  • 6. P R E V I O U S S T U D I E S • 90 petabytes of data into 41 grams of DNA. https://www.nature.com/news/synthetic-double-helix- faithfully-stores-shakespeare-s-sonnets-1.12279
  • 7. P R E V I O U S S T U D I E S • Over five million bits of data were stored and all the DNA files reproduced the information between 99.99% and 100% accuracy encoding the data in a series of overlapping short oligonucleotides. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3672958/
  • 8. P R E V I O U S S T U D I E S • DNACloud: Encoding computer files to DNA data http://www.guptalab.org/dnacloud/index.html
  • 9. P R E V I O U S S T U D I E S • Method for random access of data items stored in DNA. https://spectrum.ieee.org/the-human-os/biomedical/ devices/dna-data-storage-gets-random-access
  • 10. P R E V I O U S S T U D I E S • Fully automated system to encode and decode data in DNA. https://news.microsoft.com/innovation-stories/hello- data-dna-storage/
  • 11. U S E M I C R O O R G A N I S M A S M AT E R I A L A N D I N F O R M AT I O N
  • 12. P R O J E C T
  • 13. Write down characters and translate data to dna code P H O T O B Y A A R O N B U R D E N O N U N S P L A S H
  • 14. T R A N S L AT E D ATA T O D N A C O D E Text unicode data Coordinate data of handwriting ↓ Binary data
 0 0 1 1 0 1 0 0 1 ..... ↓ DNA data A T T G C C A .....
  • 15. Genetically inject DNA data into microbe DNA, and culture them. P H O T O B Y M I C H A E L S C H I F F E R O N U N S P L A S H
  • 16. D N A S Y N T H E S I S A N D T R A M S F O R M AT I O N • DNA syntehtize • Phosphoramidite method • DNA synthesizer • Order DNA • DNA transformation 1. Create vecotor with synthetic DNA fragment 2. Transformation by homologious recombination
  • 17. Sequencing DNA in microbe and pick out the data https://nanoporetech.com/products/flongle
  • 19. L I F E C A N B E I N F O R M AT I O N M AT E R I A L ?
  • 20. T H A N K Y O U