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 Biology has chemistry at its foundation!
Everything that has mass and 
takes up space is 
made of matter.
 …because all living 
things are made up of 
matter. 
 Also, chemical changes 
in matter are essential to 
all life processes. 
 By learning how changes 
in matter occur, 
biologists can gain an 
understanding of the life 
processes of the 
organisms they study. 
 Chemical structure and 
reactions are central to 
biological processes. 
 What biological 
processes can you think 
of that involve 
chemistry?
Liquid 
Solid 
Gas
 The properties of different kinds of atoms 
determine the structure and properties of the 
matter they compose 
 (THEME: Structure and Function)
1. size: 100 million = 1 cm 
2. composed of 
subatomic particles
 Central region of atom 
 Makes up the bulk of the mass of the atom 
 Consists of protons and neutrons
 Have a POSITIVE charge! 
 p+ 
 In nucleus
 Neutrons (n0) are NEUTRAL! 
 (carry no charge) 
 In nucleus
 Electrons (e-) have a 
negative charge! 
 1/2000 the mass of p+ 
 High-energy particles 
 Move around outside 
nucleus in clouds called 
orbitals. 
 Orbitals correspond to 
specific energy levels, 
that can only hold a 
certain number of e-
 Definition of atom 
= smallest unit of a 
chemical element 
that retains the 
properties of that 
element 
 Element = all same 
kind of atom
HELIUM ATOM 
N 
+ 
+ 
N 
- 
- 
proton 
Energy 
level 
electron neutron
Bohr’s Model 
of the Atom 
electrons in orbits 
nucleus
 All atoms of an element have 
same chemical properties 
 all behave the same 
 properties don’t change
 About 25 elements are essential for life 
 Four make up ~95%+ of living matter: 
• carbon (C) • hydrogen (H) 
• oxygen (O) • nitrogen (N) 
 A few elements make up most of remaining 4% 
including: 
• phosphorus (P) calcium (Ca) 
• sulfur (S) potassium (K) 
▪ sodium (Na) chlorine (Cl) 
▪ magnesium (Mg) iodine (I) 
▪ iron (Fe) zinc (Zn) 
▪ fluorine (F) silicon (Si)
 Check out Aluminum from the Periodic Table:
 The number of protons in an atom 
determines the element 
 # of protons = atomic # 
 The number of protons NEVER CHANGES for 
each unique element! 
 this also tells you # of electrons 
because: 
number of e- = number of p+ 
(for a neutral atom)
 Atomic number: this number indicates the 
number of protons in an atom 
 Ex: Hydrogen’s atomic number is 1 
▪ So hydrogen has 1 p+ 
 Ex: Carbon’s atomic number is 6 
▪ So carbon has 6 p+ 
**Therefore, the number of protons 
identifies the atom.
 The mass number is the total of protons and 
neutrons in the nucleus 
 Neutrons and Protons have almost exactly the 
same mass 
 Each one has the mass of ~1.7 x 10-24 grams
ATOMIC STRUCTURE 
Atomic number 
the number of protons in an atom 
the number of protons and 
neutrons in an atom (p+ + no) 
Al 27 
13 
Mass number
 The average value of atomic weight of an 
element 
 Calculated from the atomic masses of the 
isotopes of a given element, along with the 
abundance of each isotope in nature. 
 Based on the mass of carbon-12.
 Different number of neutrons 
 (lighter or heavier) 
 Some are unstable 
 nuclear reactions / decay 
 radioactivity 
 Biological tool 
 Biological hazard
Example: 
http://education.jlab.org/glossary/isotope.html
ATOMIC STRUCTURE 
Electrons are arranged in Energy Levels around the 
nucleus of an atom. (Energy levels are also called energy shells) 
• first energy level a maximum of 2 electrons 
• second energy level a maximum of 8 electrons 
• third energy level a maximum of 18 electrons
 Bohr Model of the atom: 
All of the 
protons and 
the neutrons 
The 1st ring can 
hold up to 2 e- 
The 2nd ring can 
hold up to 8 e- 
The 3rd ring 
can hold up 
to 18 e- 
The 4th ring 
and any after 
can hold up to 
32 e-
DOT DIAGRAMS 
With Dot diagrams elements and compounds are 
represented by Dots to show electrons, and circles to 
show the energy levels. For example: 
Nitrogen N 14 
N7
 Electrons in the outermost energy level. 
 Responsible for the chemical properties and 
behavior of atoms 
 Participate in 
chemical bonds 
 Ex: N has 
N 
5 valence e-
 Formed by the gain or loss of electrons by an 
atom, creating charged atoms. 
 This happens to make the atom stable.
SUMMARY 
1. The Atomic Number of an atom = number of 
protons in the nucleus. 
2. The Mass Number of an atom = number of 
Protons + Neutrons in the nucleus. 
3. In neutral atoms, the number of Protons = Number 
of Electrons. 
4. Isotopes are atoms with varying number of neutrons. 
5. Electrons orbit the nucleus in energy levels, also 
known as shells. 
6. Each energy level can only hold a set number of 
electrons. 
7. Valence electrons are found in an atoms outermost 
energy level. 
8. Ions are charged atoms, with varying number of 
electrons.
Biology's Chemistry Foundation

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Biology's Chemistry Foundation

  • 1.
  • 2.  Biology has chemistry at its foundation!
  • 3. Everything that has mass and takes up space is made of matter.
  • 4.  …because all living things are made up of matter.  Also, chemical changes in matter are essential to all life processes.  By learning how changes in matter occur, biologists can gain an understanding of the life processes of the organisms they study.  Chemical structure and reactions are central to biological processes.  What biological processes can you think of that involve chemistry?
  • 6.
  • 7.  The properties of different kinds of atoms determine the structure and properties of the matter they compose  (THEME: Structure and Function)
  • 8. 1. size: 100 million = 1 cm 2. composed of subatomic particles
  • 9.
  • 10.  Central region of atom  Makes up the bulk of the mass of the atom  Consists of protons and neutrons
  • 11.  Have a POSITIVE charge!  p+  In nucleus
  • 12.  Neutrons (n0) are NEUTRAL!  (carry no charge)  In nucleus
  • 13.  Electrons (e-) have a negative charge!  1/2000 the mass of p+  High-energy particles  Move around outside nucleus in clouds called orbitals.  Orbitals correspond to specific energy levels, that can only hold a certain number of e-
  • 14.  Definition of atom = smallest unit of a chemical element that retains the properties of that element  Element = all same kind of atom
  • 15. HELIUM ATOM N + + N - - proton Energy level electron neutron
  • 16. Bohr’s Model of the Atom electrons in orbits nucleus
  • 17.  All atoms of an element have same chemical properties  all behave the same  properties don’t change
  • 18.
  • 19.  About 25 elements are essential for life  Four make up ~95%+ of living matter: • carbon (C) • hydrogen (H) • oxygen (O) • nitrogen (N)  A few elements make up most of remaining 4% including: • phosphorus (P) calcium (Ca) • sulfur (S) potassium (K) ▪ sodium (Na) chlorine (Cl) ▪ magnesium (Mg) iodine (I) ▪ iron (Fe) zinc (Zn) ▪ fluorine (F) silicon (Si)
  • 20.
  • 21.
  • 22.  Check out Aluminum from the Periodic Table:
  • 23.  The number of protons in an atom determines the element  # of protons = atomic #  The number of protons NEVER CHANGES for each unique element!  this also tells you # of electrons because: number of e- = number of p+ (for a neutral atom)
  • 24.  Atomic number: this number indicates the number of protons in an atom  Ex: Hydrogen’s atomic number is 1 ▪ So hydrogen has 1 p+  Ex: Carbon’s atomic number is 6 ▪ So carbon has 6 p+ **Therefore, the number of protons identifies the atom.
  • 25.  The mass number is the total of protons and neutrons in the nucleus  Neutrons and Protons have almost exactly the same mass  Each one has the mass of ~1.7 x 10-24 grams
  • 26. ATOMIC STRUCTURE Atomic number the number of protons in an atom the number of protons and neutrons in an atom (p+ + no) Al 27 13 Mass number
  • 27.  The average value of atomic weight of an element  Calculated from the atomic masses of the isotopes of a given element, along with the abundance of each isotope in nature.  Based on the mass of carbon-12.
  • 28.  Different number of neutrons  (lighter or heavier)  Some are unstable  nuclear reactions / decay  radioactivity  Biological tool  Biological hazard
  • 30. ATOMIC STRUCTURE Electrons are arranged in Energy Levels around the nucleus of an atom. (Energy levels are also called energy shells) • first energy level a maximum of 2 electrons • second energy level a maximum of 8 electrons • third energy level a maximum of 18 electrons
  • 31.  Bohr Model of the atom: All of the protons and the neutrons The 1st ring can hold up to 2 e- The 2nd ring can hold up to 8 e- The 3rd ring can hold up to 18 e- The 4th ring and any after can hold up to 32 e-
  • 32. DOT DIAGRAMS With Dot diagrams elements and compounds are represented by Dots to show electrons, and circles to show the energy levels. For example: Nitrogen N 14 N7
  • 33.  Electrons in the outermost energy level.  Responsible for the chemical properties and behavior of atoms  Participate in chemical bonds  Ex: N has N 5 valence e-
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  • 35.  Formed by the gain or loss of electrons by an atom, creating charged atoms.  This happens to make the atom stable.
  • 36. SUMMARY 1. The Atomic Number of an atom = number of protons in the nucleus. 2. The Mass Number of an atom = number of Protons + Neutrons in the nucleus. 3. In neutral atoms, the number of Protons = Number of Electrons. 4. Isotopes are atoms with varying number of neutrons. 5. Electrons orbit the nucleus in energy levels, also known as shells. 6. Each energy level can only hold a set number of electrons. 7. Valence electrons are found in an atoms outermost energy level. 8. Ions are charged atoms, with varying number of electrons.