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MEDICINAL CHEMISTRY
III
B. PHARMACY III/IV (SECOND SEM.)
Dr. K. Purna Nagasree
M.Pharm. (BITS, Pilani), Ph.D., PDF (DST, WOSA)
Associate Professor
VIGNAN INSTITUTE OF PHARMACEUTICAL TECHNOLOGY
(Approved by PCI, AICTE New Delhi and affiliated to JNTUK)
ANISO 9001:2015, ISO 14001:2015, OHSAS 18001:2007 Certified institution, beside VSEZ, Duvvada, Vishakapatnam-530049,
Andhra Pradesh, India
2021
MACROLIDES
: Erythromycin, Clarithromycin, Azithromycin
Miscellaneous: Chloramphenicol*,
Clindamycin (Lincomycins)
CLINDAMYCIN
Prodrugs to encourage patient compliance
Clindamycin HCl injection causes severe pain at the site of
injection because of its low solubility in water (3mg/ml). By
forming phosphate ester, solubility of the product rises to
about 150mg/ml and this hydrolyses with t ½ =10 minutes
and does not produce any pain at the site of injection.
CHLORAMPHENICOL
Chloramphenicol acetate is a bitter-taste compound,
because this compound is soluble in saliva and interacts
with taste receptor in mouth.
Esterification with long-chain fatty acid makes drug
less water soluble and unable to dissolve in the saliva, and
free from bitter taste.
Agents that affect the function of 30S and 50S
ribosomal subunits to cause reversible inhibition of
protein synthesis; these include tetracyclines,
erythromycins, chloramphenicol, and clindamycin
MACROLIDE
Useful chemotherapeutic agents for the treatment of a variety
of infectious disorders and diseases caused by gram-positive
bacteria, both cocci and bacilli
they also exhibit useful effectiveness against gram-negative
cocci, specially, neisseria spp.
The macrolides are commonly administered for respiratory,
skin, tissue, and genitourinary infections caused by these
pathogens.
MODE OF ACTION
Macrolide antibiotics are bacteriostatic agents that inhibit
protein synthesis by binding irreversibly to a site on the
50S subunits of the bacterial ribosome
Thus, inhibiting the translocation steps of protein synthesis
at varying stages of peptide chain elongation (hinder the
translocation of elongated peptide chain back from ‘A’ site to ‘P’
site).
MODE OF ACTION
The macrolides inhibit ribosomal peptidyl transferase
activity
Some macrolides also inhibit the translocation of the
ribosome along with the mRNA template
Clarithromycin, a semisynthetic macrolide antibiotic derived
from erythromycin, inhibits bacterial protein synthesis by
binding to the bacterial 50S ribosomal subunit.
Binding inhibits peptidyl transferase activity and interferes
with amino acid translocation during the translation and
protein assembly process.
CHEMISTRY
They are characterized by five common chemical features.
1. A macrocyclic lactone usually has 12–17 atoms, hence the
name macrolide
2. A ketone group
3. One or two amino sugars glycosidically linked to the
nucleus.
4. A neutral sugar linked either to amine sugar or to
nucleus.
5. The presence of dimethyl amino moiety on the sugar
residue, which explains the basicity of these compounds, and
consequently the formation of salts.
The antibacterial spectrum of activity of the more potent
macrolides resembles that of penicillin.
Examples: Erythromycin, oleandomycin, clarithromycin,
flurithromycin, dirithromycin, azithromycin
ACID DEGRADATION OF
ERYTHROMYCIN
Erythromycin is unstable in the acid media.
The C-6 hydroxyl group reversibly attacks the C-9 ketone
giving rise to a hemiketal intermediate.
Dehydration prevents regeneration of the parent
erythromycin and the C-12 hydroxyl group can subsequently
add to produce a spiroketal species.
ACID DEGRADATION OF
ERYTHROMYCIN
The cladinose group is cleaved from the macrocycle and
more harsh conditions lead to the release of desosamine.

Useful antibacterial activity last till the dehydration of the
hemiketal and the spiroketal is weakly active.
AZITHROMYCIN
It is very stable under acidic conditions, is less active against
Streptococci and Staphylococci than erythromycin, and is far more
active against respiratory infections due to H. influenzae and
Chlamydia trachomatis
CLARITHROMYCIN
CLARITHROMYCIN
used for the treatment of a wide variety of bacterial infections
such as acute otitis, pharyngitis, tonsillitis, respiratory tract infections
It may be bacteriostatic or bactericidal depending on the organism
and drug concentration.
CHLORAMPHENICOL OR
CHLOROMYCETIN
Chloramphenicol has a spectrum of activity resembling that
of the tetracyclines except that it exhibits a bit less activity
against some gram-positive bacteria.
It contains chlorine and is obtained from an actinomycete,
and thus, named as chloromycetin.
It is specifically recommended for the treatment of serious
infections caused by H. influnzae, S. typhi (typhoid), S. pneumoniae,
and N. meningitides.
Its ability to penetrate into the CNS presents an alternative
therapy for meningitis and exhibits antirickettsial activity.
CHLORAMPENICOL
It contains a nitrobenzene moiety and is a derivative of
dichloroacetic acid.
Since it has two chiral centres, four isomers are possible.
The D-(-) threo is the biologically active form. I
t is used in the treatment of typhoid fever caused by S. typhi.
The most serious adverse effect of chloramphenicol is bone
marrow depression and fatal blood dyscrasias
SYNTHESIS OF
CHLORAMPHENICOL
SAR OF CHLORAMPHENICOL
 a. Modification of p-nitrophenyl group.
b. Modification of dichloroacetamide side chain.
c. Modification of 1, 3-prepanediol
Modification of p-nitrophenyl group:
a. Replacement of the nitro group by other substituents
leads to a reduction in activity. b. Shifting of the nitro group
from the para position also reduces the antibacterial activity.
Modification of dichloroacetamido side chain:
Other dihalo derivatives of the side chain are less potent
although major activities are retained.
Modification of 1,3-propanediol:
If the primary alcoholic group on C-1 atom is modified, it
results in a decrease in activity; hence, the alcoholic group
seems to be essential for activity.
LINCOMYCINS- CLINDAMYCIN
The name lincomycin is derived from Lincoln, Nebraska,
where it was first isolated from Streptomyces
lincolnensis found in a soil sample
LINCOMYCINS- CLINDAMYCIN
The antibiotic lincomycin is obtained from Actinomycetes,
Streptomyces, and Lincolnensis.
The ability of lincomycin to penetrate into bones, adds to its
qualities and it gets promoted in the chemotherapy of bone and
joint infections by penicillin resistant strains of S. aureus.
Variation of the substituents on pyrrolidine portion and C-5
side chain affects the activity.
The usual side effects include skin rashes, nausea, vomiting,
and diarrhoea.
Some of the examples are as follows:
i. N-demethylation imparts activity against gram-negative bacteria.
 ii. Increase in the chain length of the propyl substitutent at C-4
position in pyrrolidine moiety up to n-hexyl increase in vivo activity.
iii. The thiomethyl ether is essential for activity.
 iv. Structural modifications at C-7 position, such as introduction
of 7S chloro or 7R-OCH3, change the physiochemical parameters of
the drug (i.e. partition coefficient), and thus, alter the activity
spectrum and pharmacokinetic properties.
CLINDAMYCIN
used to treat serious infections caused by susceptible
anaerobic, streptococcal, staphylococcal, and pneumococcal
bacteria.

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MEDICINAL CHEMISTRY OF MACROLIDES AND LINCOMYCINS

  • 1. MEDICINAL CHEMISTRY III B. PHARMACY III/IV (SECOND SEM.) Dr. K. Purna Nagasree M.Pharm. (BITS, Pilani), Ph.D., PDF (DST, WOSA) Associate Professor VIGNAN INSTITUTE OF PHARMACEUTICAL TECHNOLOGY (Approved by PCI, AICTE New Delhi and affiliated to JNTUK) ANISO 9001:2015, ISO 14001:2015, OHSAS 18001:2007 Certified institution, beside VSEZ, Duvvada, Vishakapatnam-530049, Andhra Pradesh, India 2021
  • 2. MACROLIDES : Erythromycin, Clarithromycin, Azithromycin Miscellaneous: Chloramphenicol*, Clindamycin (Lincomycins)
  • 3.
  • 4. CLINDAMYCIN Prodrugs to encourage patient compliance Clindamycin HCl injection causes severe pain at the site of injection because of its low solubility in water (3mg/ml). By forming phosphate ester, solubility of the product rises to about 150mg/ml and this hydrolyses with t ½ =10 minutes and does not produce any pain at the site of injection.
  • 5. CHLORAMPHENICOL Chloramphenicol acetate is a bitter-taste compound, because this compound is soluble in saliva and interacts with taste receptor in mouth. Esterification with long-chain fatty acid makes drug less water soluble and unable to dissolve in the saliva, and free from bitter taste.
  • 6. Agents that affect the function of 30S and 50S ribosomal subunits to cause reversible inhibition of protein synthesis; these include tetracyclines, erythromycins, chloramphenicol, and clindamycin
  • 7. MACROLIDE Useful chemotherapeutic agents for the treatment of a variety of infectious disorders and diseases caused by gram-positive bacteria, both cocci and bacilli they also exhibit useful effectiveness against gram-negative cocci, specially, neisseria spp. The macrolides are commonly administered for respiratory, skin, tissue, and genitourinary infections caused by these pathogens.
  • 8. MODE OF ACTION Macrolide antibiotics are bacteriostatic agents that inhibit protein synthesis by binding irreversibly to a site on the 50S subunits of the bacterial ribosome Thus, inhibiting the translocation steps of protein synthesis at varying stages of peptide chain elongation (hinder the translocation of elongated peptide chain back from ‘A’ site to ‘P’ site).
  • 9. MODE OF ACTION The macrolides inhibit ribosomal peptidyl transferase activity Some macrolides also inhibit the translocation of the ribosome along with the mRNA template
  • 10. Clarithromycin, a semisynthetic macrolide antibiotic derived from erythromycin, inhibits bacterial protein synthesis by binding to the bacterial 50S ribosomal subunit. Binding inhibits peptidyl transferase activity and interferes with amino acid translocation during the translation and protein assembly process.
  • 11. CHEMISTRY They are characterized by five common chemical features. 1. A macrocyclic lactone usually has 12–17 atoms, hence the name macrolide 2. A ketone group 3. One or two amino sugars glycosidically linked to the nucleus. 4. A neutral sugar linked either to amine sugar or to nucleus.
  • 12. 5. The presence of dimethyl amino moiety on the sugar residue, which explains the basicity of these compounds, and consequently the formation of salts. The antibacterial spectrum of activity of the more potent macrolides resembles that of penicillin. Examples: Erythromycin, oleandomycin, clarithromycin, flurithromycin, dirithromycin, azithromycin
  • 13.
  • 14.
  • 15. ACID DEGRADATION OF ERYTHROMYCIN Erythromycin is unstable in the acid media. The C-6 hydroxyl group reversibly attacks the C-9 ketone giving rise to a hemiketal intermediate. Dehydration prevents regeneration of the parent erythromycin and the C-12 hydroxyl group can subsequently add to produce a spiroketal species.
  • 16. ACID DEGRADATION OF ERYTHROMYCIN The cladinose group is cleaved from the macrocycle and more harsh conditions lead to the release of desosamine.  Useful antibacterial activity last till the dehydration of the hemiketal and the spiroketal is weakly active.
  • 17. AZITHROMYCIN It is very stable under acidic conditions, is less active against Streptococci and Staphylococci than erythromycin, and is far more active against respiratory infections due to H. influenzae and Chlamydia trachomatis
  • 19. CLARITHROMYCIN used for the treatment of a wide variety of bacterial infections such as acute otitis, pharyngitis, tonsillitis, respiratory tract infections It may be bacteriostatic or bactericidal depending on the organism and drug concentration.
  • 20. CHLORAMPHENICOL OR CHLOROMYCETIN Chloramphenicol has a spectrum of activity resembling that of the tetracyclines except that it exhibits a bit less activity against some gram-positive bacteria. It contains chlorine and is obtained from an actinomycete, and thus, named as chloromycetin.
  • 21. It is specifically recommended for the treatment of serious infections caused by H. influnzae, S. typhi (typhoid), S. pneumoniae, and N. meningitides. Its ability to penetrate into the CNS presents an alternative therapy for meningitis and exhibits antirickettsial activity.
  • 22. CHLORAMPENICOL It contains a nitrobenzene moiety and is a derivative of dichloroacetic acid. Since it has two chiral centres, four isomers are possible. The D-(-) threo is the biologically active form. I t is used in the treatment of typhoid fever caused by S. typhi. The most serious adverse effect of chloramphenicol is bone marrow depression and fatal blood dyscrasias
  • 24. SAR OF CHLORAMPHENICOL  a. Modification of p-nitrophenyl group. b. Modification of dichloroacetamide side chain. c. Modification of 1, 3-prepanediol Modification of p-nitrophenyl group: a. Replacement of the nitro group by other substituents leads to a reduction in activity. b. Shifting of the nitro group from the para position also reduces the antibacterial activity.
  • 25. Modification of dichloroacetamido side chain: Other dihalo derivatives of the side chain are less potent although major activities are retained. Modification of 1,3-propanediol: If the primary alcoholic group on C-1 atom is modified, it results in a decrease in activity; hence, the alcoholic group seems to be essential for activity.
  • 26. LINCOMYCINS- CLINDAMYCIN The name lincomycin is derived from Lincoln, Nebraska, where it was first isolated from Streptomyces lincolnensis found in a soil sample
  • 27. LINCOMYCINS- CLINDAMYCIN The antibiotic lincomycin is obtained from Actinomycetes, Streptomyces, and Lincolnensis. The ability of lincomycin to penetrate into bones, adds to its qualities and it gets promoted in the chemotherapy of bone and joint infections by penicillin resistant strains of S. aureus. Variation of the substituents on pyrrolidine portion and C-5 side chain affects the activity. The usual side effects include skin rashes, nausea, vomiting, and diarrhoea.
  • 28. Some of the examples are as follows: i. N-demethylation imparts activity against gram-negative bacteria.  ii. Increase in the chain length of the propyl substitutent at C-4 position in pyrrolidine moiety up to n-hexyl increase in vivo activity. iii. The thiomethyl ether is essential for activity.  iv. Structural modifications at C-7 position, such as introduction of 7S chloro or 7R-OCH3, change the physiochemical parameters of the drug (i.e. partition coefficient), and thus, alter the activity spectrum and pharmacokinetic properties.
  • 29. CLINDAMYCIN used to treat serious infections caused by susceptible anaerobic, streptococcal, staphylococcal, and pneumococcal bacteria.

Editor's Notes

  1. It is isolated from Salmonella venezuelae by Ehrlich et al in 1947.