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Analyzing of Mortality Risk
Yasemin Zeynep ENGİN , Kemal TURHAN,
Aslı YAZAĞAN and Asım ÖREM
IWBBIO 2015
Granada / Spain
Aslı YAZAĞAN
Recep Tayyip Erdogan University
15.04.2015 IWBBIO 2015 Aslı Yazağan
Introduction
Lactate and Lactate dehydrogenase (LDH) are associated with
mortality.
Inpatients were analyzed with Support Vector Machines (SVM)
to identify patients under high risk of death.
15.04.2015 IWBBIO 2015 Aslı Yazağan
Lactate
 Production of cell metabolism
 Arises during respiration
 Accumulated when cells lack of sufficient oxygen
 Plays important role converting glucose to energy
15.04.2015 IWBBIO 2015 Aslı Yazağan
Lactate Dehydrogenase (LDH)
 (LDH) is a biomarker which helps to define:
the cause of tissue damage
the location in the body
monitor the progression of damage
 Many studies that Lactate and LDH are associated with
mortality.
 Increased blood lactate levels in critically ill patients are
associated with increased morbidity and mortality
15.04.2015 IWBBIO 2015 Aslı Yazağan
Support Vector Machine (SVM)
 SVM is a classifier that is highly successful in linear or
nonlinear classification problems.
15.04.2015 IWBBIO 2015 Aslı Yazağan
Support Vector Machine (SVM)
 SVM principle : to determine the optimum decision
boundaries between classes in a decision plane.
 SVM finds a set of datapoints that are the most difficult
training points to classify
 SVM classifier is the most robust and has the best
generalization ability.
15.04.2015 IWBBIO 2015 Aslı Yazağan
Objective of the Study
 Identification of patients in high risk of death.
 Lactate test values of inpatients were analysed with Support
Vector Machines (SVM).
15.04.2015 IWBBIO 2015 Aslı Yazağan
Data
686 patients records with lactate results
 219 patients in pediatric service
 467 patients are adults
 Lactate levels;
 331 patients are normal
 355 patients are high
 89 patients with high lactate levels were recorded as
dead
15.04.2015 IWBBIO 2015 Aslı Yazağan
Methodology
 Survival predictions were made by analyzing lactate test
values ​​of patients with Support Vector Machines (SVM).
3 different variable set are used to run SVM.
Na Test is most frequently requested test with lactate.
The reason of freguently requesting Na and lactade together is
feeding patients through a blood vessels
15.04.2015 IWBBIO 2015 Aslı Yazağan
Continuous Categorical DataSet
Age, Na Test, LHD, Lactate Level Sex, ICD Code All
Age, LHD Sex, ICD Code, Lactate Level Adults
Age Sex, ICD Code, Lactate Level Adults
Results - 1
15.04.2015 IWBBIO 2015 Aslı Yazağan
Variables Samples Performance
(%)
Lactate, LDH, Sodium (Na), Age, Sex, ICD Code Train
Test
Overall
202
67
269
96,6
97,0
96,6
 54 of 55 alive patients are classified in their true class.
 11 of 12 dead patients are classified in their true class.
Results -2
15.04.2015 IWBBIO 2015 Aslı Yazağan
Variables Samples Performance
(%)
Age, LDH, sex, ICD10, Lactate Train
Test
Overall
192
59
251
99,5
96,6
98,8
 41 of 41 alive patients are classified in their true class.
 16 of 18 dead patients are classified in their true class.
Results - 3
15.04.2015 IWBBIO 2015 Aslı Yazağan
Variables Samples Performance
(%)
Age, sex, ICD10, Lactate Train
Test
Overall
350
117
467
96,5
92,3
95,5
 80 of 84 alive patients are classified in their true class.
 28 of 33 dead patients are classified in their true class.
Conclusion
15.04.2015 IWBBIO 2015 Aslı Yazağan
 This study analyzes patient risk assesments and such results
can be useful while treatments are planning.
 Data mining studies on medical data should be carried out
multidisiplinary. Experts from the fields must work together.
Data mining largely depends on data quality. Better quality
data is needed in medical domain.
Thank you
&
Questions?
ayazagan@gmail.com
15.04.2015 IWBBIO 2015 Aslı Yazağan

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Analyzing of Mortality Risk

  • 1. Analyzing of Mortality Risk Yasemin Zeynep ENGİN , Kemal TURHAN, Aslı YAZAĞAN and Asım ÖREM IWBBIO 2015 Granada / Spain Aslı YAZAĞAN Recep Tayyip Erdogan University 15.04.2015 IWBBIO 2015 Aslı Yazağan
  • 2.
  • 3. Introduction Lactate and Lactate dehydrogenase (LDH) are associated with mortality. Inpatients were analyzed with Support Vector Machines (SVM) to identify patients under high risk of death. 15.04.2015 IWBBIO 2015 Aslı Yazağan
  • 4. Lactate  Production of cell metabolism  Arises during respiration  Accumulated when cells lack of sufficient oxygen  Plays important role converting glucose to energy 15.04.2015 IWBBIO 2015 Aslı Yazağan
  • 5. Lactate Dehydrogenase (LDH)  (LDH) is a biomarker which helps to define: the cause of tissue damage the location in the body monitor the progression of damage  Many studies that Lactate and LDH are associated with mortality.  Increased blood lactate levels in critically ill patients are associated with increased morbidity and mortality 15.04.2015 IWBBIO 2015 Aslı Yazağan
  • 6. Support Vector Machine (SVM)  SVM is a classifier that is highly successful in linear or nonlinear classification problems. 15.04.2015 IWBBIO 2015 Aslı Yazağan
  • 7. Support Vector Machine (SVM)  SVM principle : to determine the optimum decision boundaries between classes in a decision plane.  SVM finds a set of datapoints that are the most difficult training points to classify  SVM classifier is the most robust and has the best generalization ability. 15.04.2015 IWBBIO 2015 Aslı Yazağan
  • 8. Objective of the Study  Identification of patients in high risk of death.  Lactate test values of inpatients were analysed with Support Vector Machines (SVM). 15.04.2015 IWBBIO 2015 Aslı Yazağan
  • 9. Data 686 patients records with lactate results  219 patients in pediatric service  467 patients are adults  Lactate levels;  331 patients are normal  355 patients are high  89 patients with high lactate levels were recorded as dead 15.04.2015 IWBBIO 2015 Aslı Yazağan
  • 10. Methodology  Survival predictions were made by analyzing lactate test values ​​of patients with Support Vector Machines (SVM). 3 different variable set are used to run SVM. Na Test is most frequently requested test with lactate. The reason of freguently requesting Na and lactade together is feeding patients through a blood vessels 15.04.2015 IWBBIO 2015 Aslı Yazağan Continuous Categorical DataSet Age, Na Test, LHD, Lactate Level Sex, ICD Code All Age, LHD Sex, ICD Code, Lactate Level Adults Age Sex, ICD Code, Lactate Level Adults
  • 11. Results - 1 15.04.2015 IWBBIO 2015 Aslı Yazağan Variables Samples Performance (%) Lactate, LDH, Sodium (Na), Age, Sex, ICD Code Train Test Overall 202 67 269 96,6 97,0 96,6  54 of 55 alive patients are classified in their true class.  11 of 12 dead patients are classified in their true class.
  • 12. Results -2 15.04.2015 IWBBIO 2015 Aslı Yazağan Variables Samples Performance (%) Age, LDH, sex, ICD10, Lactate Train Test Overall 192 59 251 99,5 96,6 98,8  41 of 41 alive patients are classified in their true class.  16 of 18 dead patients are classified in their true class.
  • 13. Results - 3 15.04.2015 IWBBIO 2015 Aslı Yazağan Variables Samples Performance (%) Age, sex, ICD10, Lactate Train Test Overall 350 117 467 96,5 92,3 95,5  80 of 84 alive patients are classified in their true class.  28 of 33 dead patients are classified in their true class.
  • 14. Conclusion 15.04.2015 IWBBIO 2015 Aslı Yazağan  This study analyzes patient risk assesments and such results can be useful while treatments are planning.  Data mining studies on medical data should be carried out multidisiplinary. Experts from the fields must work together. Data mining largely depends on data quality. Better quality data is needed in medical domain.

Editor's Notes

  1. Hyperplane is searched through maximizing the margin that is the width that the boundary could be increased by before hitting a datapoint. In searching the best hyperplane, SVM finds a set of datapoints that are the most difficult training points to classify: Support Vectors Moving the support vector moves the decision boundary.
  2. In the first analysis to predict mortality patient's age, lactate level, LDH level and value of sodium (Na) were defined as continuous variables; sex and ICD code were defined as categorical variables. Na is the most frequently requested test with lactate.
  3. In the first analysis to predict mortality patient's age, lactate level, LDH level and value of sodium (Na) were defined as continuous variables; sex and ICD code were defined as categorical variables. Na is the most frequently requested test with lactate.