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Although the base sequence of most human DNA is identical
from one person to another, there are sufficient differences to
enable use of this information to identify individuals. These
differences in the sequence of bases in DNA from one
individual to another lead to differences in the distribution and
frequency of restriction enzyme recognition sites. Thus, when
an individual's DNA is fragmented with a specific restriction
enzyme, the number and length of the resulting fragments is
unique (unless the individual has an identical twin). The
different length DNA fragments are called
restriction fragment length polymorphisms
, or
RFLPs
(pronounced Ríf-lips) for short.
After studying Figure 1, answer the following questions.
1)
How many RFLPs are generated from homologue M using this
restriction enzyme? from homologue P?
2)
Explain this difference.
3)
Are the DNA segments in the diagram an entire chromosome?
an entire gene? Explain.
Figure 1.
A.
A Restriction Enzyme and its Cleaving Sequence
Enayme:
SalI derived from
Streptomyces albus
. This enzyme cuts DNA between G and T on the upper strand,
between T and G on the lower strand, and horizontally between
the two cuts.
Cleavage Sequence:
5
G T C G A C
3
5
G
T C G A C
3
3
C A G C T G
5
3
C A G C T
and
G
5
B.
Restriction Site Differences Between Two Homologous
Chromosomes Using SalI
Homologue M
Homologue P
A G G C G T C G A C G A G T C G A C T
A A G G C G T C G A C G A T T C G A C T
T C C G C A G C T G C T
C A G C T G A
T T C C G C A G C T G C T A A G C T G A
PART V. SOLVING A CRIME USING DNA (RFLP)
FINGERPRINTS
One evening the police responded to a report of gunshots.
Arriving at the scene, the officers found a parked pickup truck.
In the passenger seat was a deceased male with several gunshot
wounds. Footprints were visible in a pool of blood outside the
truck, but they were not clear enough to identify the type of
footwear that made them. Homicide detectives have narrowed
the field to three suspects.
Suspect A
was arrested near the scene and acknowledged knowing the
victim. He was wearing black work boots that appeared to have
dried blood on the soles.
At the home of
suspect B
, investigators recovered a pair of tennis shoes that also
appeared to have dried blood on the soles. Suspect B says she
had a severe nosebleed, which may have resulted in blood on
her shoes.
Suspect C
was the roommate of the deceased. When officers went to the
apartment to notify him of the death, suspect C was packing a
suitcase.
He was wearing sneakers that appeared to have dried blood on
the soles and sides. When questioned about the blood and the
murder, suspect C had no comment.
All the samples were tested and identified as human blood. The
homicide detectives have asked the molecular biology
laboratory to analyze the blood evidence using DNA fingerprint
analysis. You are the forensic scientist assigned to the case.
Figure 2 shows the DNA profiles from all the blood samples.
1.
Note that the box under the first column in Figure 2 (blood of
victim) contains the number 1. This is the first unique DNA
profile found.
2.
Moving from left to right, examine each DNA profile.
If the new profile does not match any previously examined
profile, enter a new number in the box under the column (2,3,4
etc.).
If the new DNA profile is an exact match of a previous profile,
enter the number you gave to the profile that matches this new
profile.
Continue with this process until you have examined all the DNA
profiles in Figure 2.
Questions:
1)
How many unique profiles were found?
2)
Did any profiles match the blood from suspect A’s shoes?
If so, list them:
3)
Did any profiles match the blood from suspect B’s shoes?
If so, list them:
4)
Did any profiles match the blood from suspect C’s shoes?
If so, list them:
5)
Did any profiles match the blood from the deceased male?
If so, list them:
6)
Did any profiles match the blood found on the ground outside
the truck?
If so, list them:
7)
Do these results make any individual a more likely suspect that
the others?
8)
Explain your answer, citing facts from the DNA analysis.
Blood of victim
Blood on ground at scene
Blood of suspect A
Blood of suspect B
Blood of suspect C
Blood from suspect A’s shoes
Blood from suspect B’s shoes
Blood from suspect C’s shoes
1
-----
-----
-----
2
-----
-----
-----
3
-----
-----
-----
-----
4
-----
-----
5
-----
-----
-----
-----
6
-----
-----
-----
7
-----
-----
-----
-----
-----
8
-----
9
-----
-----
-----
10
-----
-----
-----
11
-----
-----
12
-----
-----
-----
13
-----
-----
14
15
-----
-----
-----
16
-----
-----
-----
17
18
-----
-----
19
20
-----
-----
-----
-----
-----
1
Figure 2. DNA Profiles – Homicide case AF205

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Although the base sequence of most human DNA is identical from one p.docx

  • 1. Although the base sequence of most human DNA is identical from one person to another, there are sufficient differences to enable use of this information to identify individuals. These differences in the sequence of bases in DNA from one individual to another lead to differences in the distribution and frequency of restriction enzyme recognition sites. Thus, when an individual's DNA is fragmented with a specific restriction enzyme, the number and length of the resulting fragments is unique (unless the individual has an identical twin). The different length DNA fragments are called restriction fragment length polymorphisms , or RFLPs (pronounced Ríf-lips) for short. After studying Figure 1, answer the following questions. 1) How many RFLPs are generated from homologue M using this restriction enzyme? from homologue P? 2) Explain this difference. 3) Are the DNA segments in the diagram an entire chromosome? an entire gene? Explain. Figure 1. A. A Restriction Enzyme and its Cleaving Sequence
  • 2. Enayme: SalI derived from Streptomyces albus . This enzyme cuts DNA between G and T on the upper strand, between T and G on the lower strand, and horizontally between the two cuts. Cleavage Sequence: 5 G T C G A C 3 5 G T C G A C 3 3 C A G C T G 5 3 C A G C T and G 5
  • 3. B. Restriction Site Differences Between Two Homologous Chromosomes Using SalI Homologue M Homologue P A G G C G T C G A C G A G T C G A C T A A G G C G T C G A C G A T T C G A C T T C C G C A G C T G C T C A G C T G A T T C C G C A G C T G C T A A G C T G A PART V. SOLVING A CRIME USING DNA (RFLP) FINGERPRINTS One evening the police responded to a report of gunshots. Arriving at the scene, the officers found a parked pickup truck. In the passenger seat was a deceased male with several gunshot wounds. Footprints were visible in a pool of blood outside the truck, but they were not clear enough to identify the type of footwear that made them. Homicide detectives have narrowed the field to three suspects. Suspect A was arrested near the scene and acknowledged knowing the victim. He was wearing black work boots that appeared to have dried blood on the soles. At the home of
  • 4. suspect B , investigators recovered a pair of tennis shoes that also appeared to have dried blood on the soles. Suspect B says she had a severe nosebleed, which may have resulted in blood on her shoes. Suspect C was the roommate of the deceased. When officers went to the apartment to notify him of the death, suspect C was packing a suitcase. He was wearing sneakers that appeared to have dried blood on the soles and sides. When questioned about the blood and the murder, suspect C had no comment. All the samples were tested and identified as human blood. The homicide detectives have asked the molecular biology laboratory to analyze the blood evidence using DNA fingerprint analysis. You are the forensic scientist assigned to the case. Figure 2 shows the DNA profiles from all the blood samples. 1. Note that the box under the first column in Figure 2 (blood of victim) contains the number 1. This is the first unique DNA profile found. 2. Moving from left to right, examine each DNA profile. If the new profile does not match any previously examined profile, enter a new number in the box under the column (2,3,4 etc.). If the new DNA profile is an exact match of a previous profile, enter the number you gave to the profile that matches this new profile. Continue with this process until you have examined all the DNA
  • 5. profiles in Figure 2. Questions: 1) How many unique profiles were found? 2) Did any profiles match the blood from suspect A’s shoes? If so, list them: 3) Did any profiles match the blood from suspect B’s shoes? If so, list them: 4) Did any profiles match the blood from suspect C’s shoes? If so, list them: 5)
  • 6. Did any profiles match the blood from the deceased male? If so, list them: 6) Did any profiles match the blood found on the ground outside the truck? If so, list them: 7) Do these results make any individual a more likely suspect that the others? 8) Explain your answer, citing facts from the DNA analysis. Blood of victim Blood on ground at scene Blood of suspect A Blood of suspect B Blood of suspect C Blood from suspect A’s shoes Blood from suspect B’s shoes
  • 7. Blood from suspect C’s shoes 1 ----- ----- ----- 2 ----- ----- ----- 3 ----- ----- ----- ----- 4 ----- -----
  • 12. ----- 1 Figure 2. DNA Profiles – Homicide case AF205