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Abdominal CT Liver Parenchyma Segmentation
Based
on Particle Swarm Optimization
SRGE Workshop, Cairo University Conference Hall (28-November-2015)
Gehad Ismail Sayed
http://www.egyptscience.net
Overview
 Introduction
Problem Definition
Motivation
 Related Work
 Proposed Approache
 Results and Discussion
 Conclusion and Future Works
2
SRGE Workshop, Cairo University Conference Hall (28-November-2015)
Introduction
 Problem Definition
 Liver cancer is one of the most leading death in the world.
 Early detection and accurate staging of liver cancer is considered and
important issue
 Image segmentation is an important task in the image processing field.
Efficient segmentation of images considered important for further object
recognition and classification.
3
SRGE Workshop, Cairo University Conference Hall (28-November-2015)
Introduction
 Motivation
 Liver segmentation is essential step for diagnosis liver disease
 Manual segmentation of Computed Tomography (CT) scans are
tedious and prohibitively time consuming
 Automatic Liver segmentation in CT image is a difficult task due to:-
 Low level of contrast and blurry edges which characterize the CT images
 Gray levels similarity between neighbor organs like spleen, liver and stomach
 Variety of liver shape and size
4
SRGE Workshop, Cairo University Conference Hall (28-November-2015)
Related Work
 Several approaches for liver segmentation have been proposed,
which can be categorized based on the degree of automation:-
 Fully automatic
 Most of these methods respond identically to different patients. They usually produce over
segmentation and also give unsatisfied results
 Semi or interactive automatic
 It requires a limited user intervention to complete the task.
 i.e. Snake model, Active contour, …
5
SRGE Workshop, Cairo University Conference Hall (28-November-2015)
Proposed Approach
6
SRGE Workshop, Cairo University Conference Hall (28-November-2015)
Particle Swarm Optimization
SRGE Workshop, Cairo University Conference Hall (28-November-2015)
Particle Swarm Optimization
SRGE Workshop, Cairo University Conference Hall (28-November-2015)
Particle Swarm Optimization
SRGE Workshop, Cairo University Conference Hall (28-November-2015)
Particle Swarm Optimization
SRGE Workshop, Cairo University Conference Hall (28-November-2015)
Particle Swarm Optimization
SRGE Workshop, Cairo University Conference Hall (28-November-2015)
Particle Swarm Optimization
SRGE Workshop, Cairo University Conference Hall (28-November-2015)
Particle Swarm Optimization
SRGE Workshop, Cairo University Conference Hall (28-November-2015)
Particle Swarm Optimization
SRGE Workshop, Cairo University Conference Hall (28-November-2015)
 43 images are middle slice frontal images in JPEG format, selected from a
DICOM from different patients
 Image dimensions: 630x630
 Image resolution: 72 DPI, and bit depth of 24 bits.
15
Dataset Description
SRGE Workshop, Cairo University Conference Hall (28-November-2015)
Dataset Samples
SRGE Workshop, Cairo University Conference Hall (28-November-2015)
17
a) Original Image b) Median Filter Results c) Cluster-1 d) Cluster-2
e) Cluster-3
SRGE Workshop, Cairo University Conference Hall (28-November-2015)
Results and Discussion
18
a) Binarized Clustered Image b) Open Morphology
Results
c) Image After Selecting Largest Region d) Close Morphology Results
e) Image After Filling HolesSRGE Workshop, Cairo University Conference Hall (28-November-2015)
Results and Discussion
19
a) Gradient Image b) Gradient Image After
Normalization
d) Image After Applying Watershed and e) Visualization of Extracted Liver
Taking the Largest RegionSRGE Workshop, Cairo University Conference Hall (28-November-2015)
Results and Discussion
20
Parameter Value (s)
Population Size 150
Number of Iterations 10
0.6
0.6
255
0
2
-2
w 0.4
Number of Levels 3
PSO Parameters Settings
1
2
maxX
minX
maxV
minV
SRGE Workshop, Cairo University Conference Hall (28-November-2015)
Results and Discussion
21
Authors Year Accuracy
Jeongjin et al. 2007 70%
Ruchaneewan et al. 2007 86%
M. Abdallal 2012 84%
Z. Abdallal 2012 92%
M. Anter 2013 93%
N. Aldeek 2014 87%
Proposed Approach 2015 94%
Comparison Between the Proposed Approach and The Previous Approaches
SRGE Workshop, Cairo University Conference Hall (28-November-2015)
Results and Discussion
22
Dice (%) Correlation (%) True Positive (%)
Using Watershed 91.89 90.62 94.62
Without Using Watershed 89.12 87.94 90.23
Comparison Between Using Watershed in The Proposed Approach and
Without Using It
SRGE Workshop, Cairo University Conference Hall (28-November-2015)
Results and Discussion
23
Dice (%) Correlation (%) True Positive (%) CPU Process Time in
Seconds
2 78.80 76.51 71.71 50.26
3 91.89 90.62 94.62 56.66
4 87.98 86.83 93.36 62.39
5 80.48 80.62 88.44 75.69
Comparison Between The Results Obtained From Different Levels
SRGE Workshop, Cairo University Conference Hall (28-November-2015)
Results and Discussion
24
Dice (%) Correlation (%) True Positive (%)
Active Contour 71.87 69.22 72.43
Global Threshold 81.34 79.41 81.19
Proposed Approach 91.89 90.62 94.62
Comparison Between The Proposed Approach and The Other Approaches
SRGE Workshop, Cairo University Conference Hall (28-November-2015)
Results and Discussion
Conclusion and Future Works
 Conclusion
 The experimental results show that the proposed approach gives better result
compared with other approaches and obtained over all accuracy about 94% of
good liver extraction.
 These results from proposed approach can help for further diagnosis and
treatment planning
 Future Works
 Increase the number of CT images dataset to evaluate the performance of the
proposed approach
 Test new versions of PSO
25
SRGE Workshop, Cairo University Conference Hall (28-November-2015)
Thanks and Acknowledgement
26
SRGE Workshop, Cairo University Conference Hall (28-November-2015)

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Abdominal CT Liver Parenchyma Segmentation Based on Particle Swarm Optimization

  • 1. Abdominal CT Liver Parenchyma Segmentation Based on Particle Swarm Optimization SRGE Workshop, Cairo University Conference Hall (28-November-2015) Gehad Ismail Sayed http://www.egyptscience.net
  • 2. Overview  Introduction Problem Definition Motivation  Related Work  Proposed Approache  Results and Discussion  Conclusion and Future Works 2 SRGE Workshop, Cairo University Conference Hall (28-November-2015)
  • 3. Introduction  Problem Definition  Liver cancer is one of the most leading death in the world.  Early detection and accurate staging of liver cancer is considered and important issue  Image segmentation is an important task in the image processing field. Efficient segmentation of images considered important for further object recognition and classification. 3 SRGE Workshop, Cairo University Conference Hall (28-November-2015)
  • 4. Introduction  Motivation  Liver segmentation is essential step for diagnosis liver disease  Manual segmentation of Computed Tomography (CT) scans are tedious and prohibitively time consuming  Automatic Liver segmentation in CT image is a difficult task due to:-  Low level of contrast and blurry edges which characterize the CT images  Gray levels similarity between neighbor organs like spleen, liver and stomach  Variety of liver shape and size 4 SRGE Workshop, Cairo University Conference Hall (28-November-2015)
  • 5. Related Work  Several approaches for liver segmentation have been proposed, which can be categorized based on the degree of automation:-  Fully automatic  Most of these methods respond identically to different patients. They usually produce over segmentation and also give unsatisfied results  Semi or interactive automatic  It requires a limited user intervention to complete the task.  i.e. Snake model, Active contour, … 5 SRGE Workshop, Cairo University Conference Hall (28-November-2015)
  • 6. Proposed Approach 6 SRGE Workshop, Cairo University Conference Hall (28-November-2015)
  • 7. Particle Swarm Optimization SRGE Workshop, Cairo University Conference Hall (28-November-2015)
  • 8. Particle Swarm Optimization SRGE Workshop, Cairo University Conference Hall (28-November-2015)
  • 9. Particle Swarm Optimization SRGE Workshop, Cairo University Conference Hall (28-November-2015)
  • 10. Particle Swarm Optimization SRGE Workshop, Cairo University Conference Hall (28-November-2015)
  • 11. Particle Swarm Optimization SRGE Workshop, Cairo University Conference Hall (28-November-2015)
  • 12. Particle Swarm Optimization SRGE Workshop, Cairo University Conference Hall (28-November-2015)
  • 13. Particle Swarm Optimization SRGE Workshop, Cairo University Conference Hall (28-November-2015)
  • 14. Particle Swarm Optimization SRGE Workshop, Cairo University Conference Hall (28-November-2015)
  • 15.  43 images are middle slice frontal images in JPEG format, selected from a DICOM from different patients  Image dimensions: 630x630  Image resolution: 72 DPI, and bit depth of 24 bits. 15 Dataset Description SRGE Workshop, Cairo University Conference Hall (28-November-2015)
  • 16. Dataset Samples SRGE Workshop, Cairo University Conference Hall (28-November-2015)
  • 17. 17 a) Original Image b) Median Filter Results c) Cluster-1 d) Cluster-2 e) Cluster-3 SRGE Workshop, Cairo University Conference Hall (28-November-2015) Results and Discussion
  • 18. 18 a) Binarized Clustered Image b) Open Morphology Results c) Image After Selecting Largest Region d) Close Morphology Results e) Image After Filling HolesSRGE Workshop, Cairo University Conference Hall (28-November-2015) Results and Discussion
  • 19. 19 a) Gradient Image b) Gradient Image After Normalization d) Image After Applying Watershed and e) Visualization of Extracted Liver Taking the Largest RegionSRGE Workshop, Cairo University Conference Hall (28-November-2015) Results and Discussion
  • 20. 20 Parameter Value (s) Population Size 150 Number of Iterations 10 0.6 0.6 255 0 2 -2 w 0.4 Number of Levels 3 PSO Parameters Settings 1 2 maxX minX maxV minV SRGE Workshop, Cairo University Conference Hall (28-November-2015) Results and Discussion
  • 21. 21 Authors Year Accuracy Jeongjin et al. 2007 70% Ruchaneewan et al. 2007 86% M. Abdallal 2012 84% Z. Abdallal 2012 92% M. Anter 2013 93% N. Aldeek 2014 87% Proposed Approach 2015 94% Comparison Between the Proposed Approach and The Previous Approaches SRGE Workshop, Cairo University Conference Hall (28-November-2015) Results and Discussion
  • 22. 22 Dice (%) Correlation (%) True Positive (%) Using Watershed 91.89 90.62 94.62 Without Using Watershed 89.12 87.94 90.23 Comparison Between Using Watershed in The Proposed Approach and Without Using It SRGE Workshop, Cairo University Conference Hall (28-November-2015) Results and Discussion
  • 23. 23 Dice (%) Correlation (%) True Positive (%) CPU Process Time in Seconds 2 78.80 76.51 71.71 50.26 3 91.89 90.62 94.62 56.66 4 87.98 86.83 93.36 62.39 5 80.48 80.62 88.44 75.69 Comparison Between The Results Obtained From Different Levels SRGE Workshop, Cairo University Conference Hall (28-November-2015) Results and Discussion
  • 24. 24 Dice (%) Correlation (%) True Positive (%) Active Contour 71.87 69.22 72.43 Global Threshold 81.34 79.41 81.19 Proposed Approach 91.89 90.62 94.62 Comparison Between The Proposed Approach and The Other Approaches SRGE Workshop, Cairo University Conference Hall (28-November-2015) Results and Discussion
  • 25. Conclusion and Future Works  Conclusion  The experimental results show that the proposed approach gives better result compared with other approaches and obtained over all accuracy about 94% of good liver extraction.  These results from proposed approach can help for further diagnosis and treatment planning  Future Works  Increase the number of CT images dataset to evaluate the performance of the proposed approach  Test new versions of PSO 25 SRGE Workshop, Cairo University Conference Hall (28-November-2015)
  • 26. Thanks and Acknowledgement 26 SRGE Workshop, Cairo University Conference Hall (28-November-2015)

Editor's Notes

  1. Only 40 frontal CT Liver Images are used