Filtering in seismic data processing? How filtering help to suppress noises. Haseeb Ahmed
To enhance the signal-Noise ratio different techniques are used to remove the noises.
Types of Seismic Filtering:
1- Frequency Filtering.
2- Inverse Filtering (Deconvolution).
3- Velocity Filtering.
Filtering in seismic data processing? How filtering help to suppress noises. Haseeb Ahmed
To enhance the signal-Noise ratio different techniques are used to remove the noises.
Types of Seismic Filtering:
1- Frequency Filtering.
2- Inverse Filtering (Deconvolution).
3- Velocity Filtering.
Dr Jian Zhong - Modelling the neighbourhood-scale dispersion of ultrafine par...IES / IAQM
An unapologetically technical conference, DMUG remains the key annual event for experts in this field. Unmissable speakers will be examining topical issues in emissions, exposure and dispersion modelling.
Dr Jian Zhong - Modelling the neighbourhood-scale dispersion of ultrafine par...IES / IAQM
An unapologetically technical conference, DMUG remains the key annual event for experts in this field. Unmissable speakers will be examining topical issues in emissions, exposure and dispersion modelling.
Time-Frequency Attenuation of Swell Noise on Seismic Data from Offshore Centr...iosrjce
Diversity of noise types with different characteristics makesseparation of signal and noise a
challenging process.Swell noiseusually contaminates tracesand it is characterized by high amplitude and low
frequencies and affects only a limited band offrequencies.This work presents how FX projection filter (FXEDIT
code) processing approach was used to attenuate swell noise on dataset from a marine seismic survey
offshoreCentral Niger-Delta, Nigeria, which shows as an effective amplitude preserving and robust tool that
gives better results compared to many other conventional filtering algorithms.With this processing approach
and working side-by-side with the shot gather and the RMS windows; the results achieved are reliable and
satisfactory by giving clearer images for reservoir characterization. The level of swell noise attenuation after
this approach greatly increased the confidence to use the data for subsequent processing steps.
Presentation in the Franhoufer IIS about my thesis: A wavelet transform based...Pedro Cerón Colás
Presentation in the Franhoufer IIS about my thesis: A wavelet transform based application for seismic waves. Analysis of the performance. Code made in Matlab.
Modeling and Estimation of Stationary and Non-stationary Noises of Rubidium A...IJERA Editor
Noise estimation of atomic clock is one of the important research areas in the field of atomic clock development and application. Most of the atomic clocks are having random-stochastic noises and periodic noises due to temperature variation. Random-stochastic noises have a well identified signature in time domain but periodic noises are difficult to analyze in time domain. However, in this paper, an effort is made to identify and analyze the deterministic trends of both random-stochastic noises and periodic noises due to variation in temperature using an alternate approach of least-squares normalized-error (LSNE) regression algorithm. A MATLAB based application with graphical user interface (GUI) is developed to estimate and analyze random-stochastic noises and periodic noises and re-estimate the stability of rubidium atomic clock after removing these noises from the raw phase data. The estimation of stationary noises are done using Allan variance from time domain data and noise profile is calculated using curve fit method. The estimation of periodic noises due to temperature variation is carried in frequency domain through spurious analysis of the frequency data of atomic clock.
Introduction:
RNA interference (RNAi) or Post-Transcriptional Gene Silencing (PTGS) is an important biological process for modulating eukaryotic gene expression.
It is highly conserved process of posttranscriptional gene silencing by which double stranded RNA (dsRNA) causes sequence-specific degradation of mRNA sequences.
dsRNA-induced gene silencing (RNAi) is reported in a wide range of eukaryotes ranging from worms, insects, mammals and plants.
This process mediates resistance to both endogenous parasitic and exogenous pathogenic nucleic acids, and regulates the expression of protein-coding genes.
What are small ncRNAs?
micro RNA (miRNA)
short interfering RNA (siRNA)
Properties of small non-coding RNA:
Involved in silencing mRNA transcripts.
Called “small” because they are usually only about 21-24 nucleotides long.
Synthesized by first cutting up longer precursor sequences (like the 61nt one that Lee discovered).
Silence an mRNA by base pairing with some sequence on the mRNA.
Discovery of siRNA?
The first small RNA:
In 1993 Rosalind Lee (Victor Ambros lab) was studying a non- coding gene in C. elegans, lin-4, that was involved in silencing of another gene, lin-14, at the appropriate time in the
development of the worm C. elegans.
Two small transcripts of lin-4 (22nt and 61nt) were found to be complementary to a sequence in the 3' UTR of lin-14.
Because lin-4 encoded no protein, she deduced that it must be these transcripts that are causing the silencing by RNA-RNA interactions.
Types of RNAi ( non coding RNA)
MiRNA
Length (23-25 nt)
Trans acting
Binds with target MRNA in mismatch
Translation inhibition
Si RNA
Length 21 nt.
Cis acting
Bind with target Mrna in perfect complementary sequence
Piwi-RNA
Length ; 25 to 36 nt.
Expressed in Germ Cells
Regulates trnasposomes activity
MECHANISM OF RNAI:
First the double-stranded RNA teams up with a protein complex named Dicer, which cuts the long RNA into short pieces.
Then another protein complex called RISC (RNA-induced silencing complex) discards one of the two RNA strands.
The RISC-docked, single-stranded RNA then pairs with the homologous mRNA and destroys it.
THE RISC COMPLEX:
RISC is large(>500kD) RNA multi- protein Binding complex which triggers MRNA degradation in response to MRNA
Unwinding of double stranded Si RNA by ATP independent Helicase
Active component of RISC is Ago proteins( ENDONUCLEASE) which cleave target MRNA.
DICER: endonuclease (RNase Family III)
Argonaute: Central Component of the RNA-Induced Silencing Complex (RISC)
One strand of the dsRNA produced by Dicer is retained in the RISC complex in association with Argonaute
ARGONAUTE PROTEIN :
1.PAZ(PIWI/Argonaute/ Zwille)- Recognition of target MRNA
2.PIWI (p-element induced wimpy Testis)- breaks Phosphodiester bond of mRNA.)RNAse H activity.
MiRNA:
The Double-stranded RNAs are naturally produced in eukaryotic cells during development, and they have a key role in regulating gene expression .
Comparing Evolved Extractive Text Summary Scores of Bidirectional Encoder Rep...University of Maribor
Slides from:
11th International Conference on Electrical, Electronics and Computer Engineering (IcETRAN), Niš, 3-6 June 2024
Track: Artificial Intelligence
https://www.etran.rs/2024/en/home-english/
This presentation explores a brief idea about the structural and functional attributes of nucleotides, the structure and function of genetic materials along with the impact of UV rays and pH upon them.
Cancer cell metabolism: special Reference to Lactate PathwayAADYARAJPANDEY1
Normal Cell Metabolism:
Cellular respiration describes the series of steps that cells use to break down sugar and other chemicals to get the energy we need to function.
Energy is stored in the bonds of glucose and when glucose is broken down, much of that energy is released.
Cell utilize energy in the form of ATP.
The first step of respiration is called glycolysis. In a series of steps, glycolysis breaks glucose into two smaller molecules - a chemical called pyruvate. A small amount of ATP is formed during this process.
Most healthy cells continue the breakdown in a second process, called the Kreb's cycle. The Kreb's cycle allows cells to “burn” the pyruvates made in glycolysis to get more ATP.
The last step in the breakdown of glucose is called oxidative phosphorylation (Ox-Phos).
It takes place in specialized cell structures called mitochondria. This process produces a large amount of ATP. Importantly, cells need oxygen to complete oxidative phosphorylation.
If a cell completes only glycolysis, only 2 molecules of ATP are made per glucose. However, if the cell completes the entire respiration process (glycolysis - Kreb's - oxidative phosphorylation), about 36 molecules of ATP are created, giving it much more energy to use.
IN CANCER CELL:
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
introduction to WARBERG PHENOMENA:
WARBURG EFFECT Usually, cancer cells are highly glycolytic (glucose addiction) and take up more glucose than do normal cells from outside.
Otto Heinrich Warburg (; 8 October 1883 – 1 August 1970) In 1931 was awarded the Nobel Prize in Physiology for his "discovery of the nature and mode of action of the respiratory enzyme.
WARNBURG EFFECT : cancer cells under aerobic (well-oxygenated) conditions to metabolize glucose to lactate (aerobic glycolysis) is known as the Warburg effect. Warburg made the observation that tumor slices consume glucose and secrete lactate at a higher rate than normal tissues.
Earliest Galaxies in the JADES Origins Field: Luminosity Function and Cosmic ...Sérgio Sacani
We characterize the earliest galaxy population in the JADES Origins Field (JOF), the deepest
imaging field observed with JWST. We make use of the ancillary Hubble optical images (5 filters
spanning 0.4−0.9µm) and novel JWST images with 14 filters spanning 0.8−5µm, including 7 mediumband filters, and reaching total exposure times of up to 46 hours per filter. We combine all our data
at > 2.3µm to construct an ultradeep image, reaching as deep as ≈ 31.4 AB mag in the stack and
30.3-31.0 AB mag (5σ, r = 0.1” circular aperture) in individual filters. We measure photometric
redshifts and use robust selection criteria to identify a sample of eight galaxy candidates at redshifts
z = 11.5 − 15. These objects show compact half-light radii of R1/2 ∼ 50 − 200pc, stellar masses of
M⋆ ∼ 107−108M⊙, and star-formation rates of SFR ∼ 0.1−1 M⊙ yr−1
. Our search finds no candidates
at 15 < z < 20, placing upper limits at these redshifts. We develop a forward modeling approach to
infer the properties of the evolving luminosity function without binning in redshift or luminosity that
marginalizes over the photometric redshift uncertainty of our candidate galaxies and incorporates the
impact of non-detections. We find a z = 12 luminosity function in good agreement with prior results,
and that the luminosity function normalization and UV luminosity density decline by a factor of ∼ 2.5
from z = 12 to z = 14. We discuss the possible implications of our results in the context of theoretical
models for evolution of the dark matter halo mass function.
THE IMPORTANCE OF MARTIAN ATMOSPHERE SAMPLE RETURN.Sérgio Sacani
The return of a sample of near-surface atmosphere from Mars would facilitate answers to several first-order science questions surrounding the formation and evolution of the planet. One of the important aspects of terrestrial planet formation in general is the role that primary atmospheres played in influencing the chemistry and structure of the planets and their antecedents. Studies of the martian atmosphere can be used to investigate the role of a primary atmosphere in its history. Atmosphere samples would also inform our understanding of the near-surface chemistry of the planet, and ultimately the prospects for life. High-precision isotopic analyses of constituent gases are needed to address these questions, requiring that the analyses are made on returned samples rather than in situ.
Multi-source connectivity as the driver of solar wind variability in the heli...Sérgio Sacani
The ambient solar wind that flls the heliosphere originates from multiple
sources in the solar corona and is highly structured. It is often described
as high-speed, relatively homogeneous, plasma streams from coronal
holes and slow-speed, highly variable, streams whose source regions are
under debate. A key goal of ESA/NASA’s Solar Orbiter mission is to identify
solar wind sources and understand what drives the complexity seen in the
heliosphere. By combining magnetic feld modelling and spectroscopic
techniques with high-resolution observations and measurements, we show
that the solar wind variability detected in situ by Solar Orbiter in March
2022 is driven by spatio-temporal changes in the magnetic connectivity to
multiple sources in the solar atmosphere. The magnetic feld footpoints
connected to the spacecraft moved from the boundaries of a coronal hole
to one active region (12961) and then across to another region (12957). This
is refected in the in situ measurements, which show the transition from fast
to highly Alfvénic then to slow solar wind that is disrupted by the arrival of
a coronal mass ejection. Our results describe solar wind variability at 0.5 au
but are applicable to near-Earth observatories.
A brief information about the SCOP protein database used in bioinformatics.
The Structural Classification of Proteins (SCOP) database is a comprehensive and authoritative resource for the structural and evolutionary relationships of proteins. It provides a detailed and curated classification of protein structures, grouping them into families, superfamilies, and folds based on their structural and sequence similarities.
In silico drugs analogue design: novobiocin analogues.pptx
A Fresh Look at Seismic Thin-bed Mapping
1. A Fresh Look at Seismic Thin-bed Mapping
ECHO Magazine, Issue 9, 2017, SPE Suez University Student Chapter
http://echo.spesusc.org/echo-9/
A Fresh Look at Seismic Thin-Bed Mapping
Victor Aarre; Schlumberger; Norway
Introduction
Thin beds are often of great commercial interest for the energy industry. It is of particular
interest to be able to map sand bodies embedded in shale host rocks. A sand body is often
porous and permeable, making it a perfect reservoir rock for hydrocarbons. Shale rocks are
not permeable by nature, and are hence usually excellent reservoir cap rocks, keeping the
hydrocarbons firmly in place in the embedded sand body.
It is well known in the industry that seismic reflections from geological interfaces in the earth’s
interior interfere with each other. This interference may either be constructive or destructive.
The seismic wavelet is, according to the Fourier theorem, the sum of a number of individual
frequencies, where each frequency has its own amplitude and phase. When a seismic wavelet
is reflected from two neighboring reflectors (e.g. the top and bottom of a thin bed), the
amplitude spectrum of the reflected wavelet will be different from the spectrum of the
original wavelet. This is because each frequency in the wavelet will get a modified amplitude,
due to the interference between the two reflectors. I.e. the two reflectors act as a filter. By
examining the spectrum of the reflected wavelet it is hence, in some cases, possible to infer
the presence and thickness of thin beds in the underground.
I will here introduce a new method for spectral mapping of thin beds, using the spectral phase
response, instead of the more common spectral amplitude methods currently used in our
industry.
Earlier Work
There is a lot of earlier work in this domain. The most famous approach was discovered, and
patented, by BP. The commercial name of their approach is “The Tuning Cube”. That work was
further elaborated on in a paper, written by K. Marfurt and R. Kirlin, in the Geophysics journal
in 2001. That paper is an excellent introduction to the general scientific topic.
What’s common for most methods for thin-bed detection through spectral decomposition is
that those methods attempt to infer the presence of thin beds through studies of the
amplitude spectrum of the reflected waveform. That is a challenge; because the amplitude of
the individual frequencies in the source wavelet are not equal (i.e. the amplitude spectrum of
the wavelet is not “white” or “flat”). This means that the reflected seismic must become
spectrally balanced before the tuning analysis begins. This spectral balancing step is
complicated, at least when we do not have any wells available for joint log/seismic wavelet
estimation, and one hence needs to use blind/statistical methods for the spectral balancing
step.
Matos et. al. (Geophysics, vol. 76/2, 2011) recognized this, and tried to get around the
amplitude sensitivity issue through the exploitation of “phase residues”. That work is
essentially a multi-frequency local-phase integration process. I will here present an improved
2. A Fresh Look at Seismic Thin-bed Mapping
ECHO Magazine, Issue 9, 2017, SPE Suez University Student Chapter
http://echo.spesusc.org/echo-9/
approach, which only operates on individual frequencies, and hence manages to avoid the
multi-frequency phase integration step.
Short Description of the New Approach
I will perform the analysis independently on each trace in the cube, and the method is hence
not restricted to 3D seismic. It works equally well for 2D and 1D seismic data. The method is
actually not dependent on seismic at all. It can work on any time series of any data type
(voice, radar, x-ray, etc.).
Fig.1 - One vertical section through a 3D seismic cube.
For each trace in the dataset, split the trace into the appropriate number of spectral
components one needs to analyze. This number is in general dependent on the sample rate
(which determines the maximum frequency, called Nyquist frequency) and the number of
samples in the trace (which determines the number of spectral components which are
required to fully represent the input trace).
Fig.2 - This is the time-varying amplitude plot of the individual spectral components for the
input trace
In Fig 2, Note that the lowest frequencies (to the left) and the highest frequencies (to the
right) are very weak, compared to the amplitudes in the center of the spectrum. It will be
impossible to establish spectral high’s or low’s without first doing a spectral balancing step.
This is the step I manage to avoid with my new approach. Note that the amplitude of each
3. A Fresh Look at Seismic Thin-bed Mapping
ECHO Magazine, Issue 9, 2017, SPE Suez University Student Chapter
http://echo.spesusc.org/echo-9/
spectral component is identical to the Envelope (which is often also known as the
“Reflection Strength”) of that spectral component.
Fig.3 - This is the instantaneous phase of each spectral component in the input trace
The value range for the instantaneous phase in Fig. 3 is +/- 180 degrees. Please note that the
phase spectrum is independent of the amplitude of the individual spectral components, and
does hence not require spectral balancing.
Fig.4 - The instantaneous frequency for each spectral component
The Instantaneous Frequency presented in Fig. 4 is per definition equal to (1/360) * d/dt
(instantaneous phase), and the unit is Hz (i.e. oscillations per second). Instantaneous
Frequency is, in other words, essentially the time-derivative of Instantaneous Phase.
4. A Fresh Look at Seismic Thin-bed Mapping
ECHO Magazine, Issue 9, 2017, SPE Suez University Student Chapter
http://echo.spesusc.org/echo-9/
Fig.5 - A comparison between frequency-dependent Spectral Amplitude/Envelope (to the left),
Spectral Phase/Instantaneous Phase (center) and “Destructive Interference” (as described in
step 4) in the new method) to the right.
Fig.6 - The corresponding “tuning thickness” result (equal to 1/tuning frequency), as
described in step 7) in the new method. Please note the excellent lateral continuity of the
individual layers/beds in the 2D section. This adds confidence to the method, which is 1D in
nature.
5. A Fresh Look at Seismic Thin-bed Mapping
ECHO Magazine, Issue 9, 2017, SPE Suez University Student Chapter
http://echo.spesusc.org/echo-9/
Conclusions
Tuning frequency is an indicator of the presence of thin beds in the underground. I have
described a practical and simple new way to estimate the tuning frequency through an
investigation of the time-varying phase spectrum. This new method removes the dependency
of a complicated spectral balancing step, which is required by most existing methods. The new
method also removes the need for an alternative multi-frequency phase integration step.
Summary of the Method
The steps are as follows, for each individual 1D trace, in the input 2D/3D seismic volume:
1) Split the trace into a set of individual spectral components, each with its own unique
frequency F.
2) Calculate instantaneous frequency Fi for each spectral component (please note that
instantaneous frequency is the derivative of instantaneous phase; this means that the
instantaneous frequency is totally un-correlated to the seismic amplitude of the spectral
component).
3) We know that, in theory, the instantaneous frequency Fi for each sample in the spectral
component F should be identical to F. This will not be the case for samples where we have
destructive interference (because we do not have a reflected signal there for that spectral
component, and the phase will hence be undefined, as it’s a singularity), and the spectral
component Fi will hence be substantially different from F.
4) Quantify the time-varying difference Di between Fi and F, and use this as an indicator
measure of Destructive Interference (DI), for each spectral component F.
5) For each sample in the input trace: search for the spectral component Ft where the
difference Di is maximum for that sample. Ft will be the tuning frequency for that sample. The
search may optionally be bound between user-provided limit frequencies Fmin and Fmax.
6) The limit frequencies Fmin and Fmax can optionally be estimated from Di for each spectral
component, and may possibly be estimated as a smoothly time-varying function. This is
because Di will be highly chaotic for the lowest and highest frequencies. These are the
frequencies outside the bandwidth of the seismic wavelet. We can hence use a measure of
chaos in Di to establish where the frequencies start to become reliable, and hence determine
the limits of the useful frequency spectrum for the input seismic data.
7) Optionally calculate the tuning thickness T from the tuning frequency Ft for each sample in
the input trace. We know that the tuning frequency is inferred from destructive interference,
and that the most likely cause for destructive interference is a thin bed with equal, but
opposite polarity, reflectors. We can hence use the equation: T = 1/ Ft.